12362add9SBarry Smith 2af0996ceSBarry Smith #include <petsc/private/isimpl.h> /*I "petscis.h" I*/ 3e8f14785SLisandro Dalcin #include <petsc/private/hashmapi.h> 40c312b8eSJed Brown #include <petscsf.h> 5665c2dedSJed Brown #include <petscviewer.h> 62362add9SBarry Smith 77087cfbeSBarry Smith PetscClassId IS_LTOGM_CLASSID; 8268a049cSStefano Zampini static PetscErrorCode ISLocalToGlobalMappingGetBlockInfo_Private(ISLocalToGlobalMapping, PetscInt *, PetscInt **, PetscInt **, PetscInt ***); 98e58c17dSMatthew Knepley 10413f72f0SBarry Smith typedef struct { 11413f72f0SBarry Smith PetscInt *globals; 12413f72f0SBarry Smith } ISLocalToGlobalMapping_Basic; 13413f72f0SBarry Smith 14413f72f0SBarry Smith typedef struct { 15e8f14785SLisandro Dalcin PetscHMapI globalht; 16413f72f0SBarry Smith } ISLocalToGlobalMapping_Hash; 17413f72f0SBarry Smith 186528b96dSMatthew G. Knepley /*@C 19cab54364SBarry Smith ISGetPointRange - Returns a description of the points in an `IS` suitable for traversal 20413f72f0SBarry Smith 2120662ed9SBarry Smith Not Collective 226528b96dSMatthew G. Knepley 236528b96dSMatthew G. Knepley Input Parameter: 24cab54364SBarry Smith . pointIS - The `IS` object 256528b96dSMatthew G. Knepley 266528b96dSMatthew G. Knepley Output Parameters: 276528b96dSMatthew G. Knepley + pStart - The first index, see notes 286528b96dSMatthew G. Knepley . pEnd - One past the last index, see notes 296528b96dSMatthew G. Knepley - points - The indices, see notes 306528b96dSMatthew G. Knepley 316528b96dSMatthew G. Knepley Level: intermediate 326528b96dSMatthew G. Knepley 33cab54364SBarry Smith Notes: 3420662ed9SBarry Smith If the `IS` contains contiguous indices in an `ISSTRIDE`, then the indices are contained in [pStart, pEnd) and points = `NULL`. 3520662ed9SBarry Smith Otherwise, `pStart = 0`, `pEnd = numIndices`, and points is an array of the indices. This supports the following pattern 36cab54364SBarry Smith .vb 37cab54364SBarry Smith ISGetPointRange(is, &pStart, &pEnd, &points); 38cab54364SBarry Smith for (p = pStart; p < pEnd; ++p) { 39cab54364SBarry Smith const PetscInt point = points ? points[p] : p; 4020662ed9SBarry Smith // use point 41cab54364SBarry Smith } 42cab54364SBarry Smith ISRestorePointRange(is, &pstart, &pEnd, &points); 43cab54364SBarry Smith .ve 4420662ed9SBarry Smith Hence the same code can be written for `pointIS` being a `ISSTRIDE` or `ISGENERAL` 45cab54364SBarry Smith 46cab54364SBarry Smith .seealso: [](sec_scatter), `IS`, `ISRestorePointRange()`, `ISGetPointSubrange()`, `ISGetIndices()`, `ISCreateStride()` 476528b96dSMatthew G. Knepley @*/ 48d71ae5a4SJacob Faibussowitsch PetscErrorCode ISGetPointRange(IS pointIS, PetscInt *pStart, PetscInt *pEnd, const PetscInt **points) 49d71ae5a4SJacob Faibussowitsch { 509305a4c7SMatthew G. Knepley PetscInt numCells, step = 1; 519305a4c7SMatthew G. Knepley PetscBool isStride; 529305a4c7SMatthew G. Knepley 539305a4c7SMatthew G. Knepley PetscFunctionBeginHot; 549305a4c7SMatthew G. Knepley *pStart = 0; 559305a4c7SMatthew G. Knepley *points = NULL; 569566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &numCells)); 579566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)pointIS, ISSTRIDE, &isStride)); 589566063dSJacob Faibussowitsch if (isStride) PetscCall(ISStrideGetInfo(pointIS, pStart, &step)); 599305a4c7SMatthew G. Knepley *pEnd = *pStart + numCells; 609566063dSJacob Faibussowitsch if (!isStride || step != 1) PetscCall(ISGetIndices(pointIS, points)); 613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 629305a4c7SMatthew G. Knepley } 639305a4c7SMatthew G. Knepley 646528b96dSMatthew G. Knepley /*@C 65cab54364SBarry Smith ISRestorePointRange - Destroys the traversal description created with `ISGetPointRange()` 666528b96dSMatthew G. Knepley 6720662ed9SBarry Smith Not Collective 686528b96dSMatthew G. Knepley 696528b96dSMatthew G. Knepley Input Parameters: 70cab54364SBarry Smith + pointIS - The `IS` object 71cab54364SBarry Smith . pStart - The first index, from `ISGetPointRange()` 72cab54364SBarry Smith . pEnd - One past the last index, from `ISGetPointRange()` 73cab54364SBarry Smith - points - The indices, from `ISGetPointRange()` 746528b96dSMatthew G. Knepley 756528b96dSMatthew G. Knepley Level: intermediate 766528b96dSMatthew G. Knepley 77cab54364SBarry Smith .seealso: [](sec_scatter), `IS`, `ISGetPointRange()`, `ISGetPointSubrange()`, `ISGetIndices()`, `ISCreateStride()` 786528b96dSMatthew G. Knepley @*/ 79d71ae5a4SJacob Faibussowitsch PetscErrorCode ISRestorePointRange(IS pointIS, PetscInt *pStart, PetscInt *pEnd, const PetscInt **points) 80d71ae5a4SJacob Faibussowitsch { 819305a4c7SMatthew G. Knepley PetscInt step = 1; 829305a4c7SMatthew G. Knepley PetscBool isStride; 839305a4c7SMatthew G. Knepley 849305a4c7SMatthew G. Knepley PetscFunctionBeginHot; 859566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)pointIS, ISSTRIDE, &isStride)); 869566063dSJacob Faibussowitsch if (isStride) PetscCall(ISStrideGetInfo(pointIS, pStart, &step)); 879566063dSJacob Faibussowitsch if (!isStride || step != 1) PetscCall(ISGetIndices(pointIS, points)); 883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 899305a4c7SMatthew G. Knepley } 909305a4c7SMatthew G. Knepley 916528b96dSMatthew G. Knepley /*@C 92cab54364SBarry Smith ISGetPointSubrange - Configures the input `IS` to be a subrange for the traversal information given 936528b96dSMatthew G. Knepley 9420662ed9SBarry Smith Not Collective 956528b96dSMatthew G. Knepley 966528b96dSMatthew G. Knepley Input Parameters: 97cab54364SBarry Smith + subpointIS - The `IS` object to be configured 986528b96dSMatthew G. Knepley . pStart - The first index of the subrange 996528b96dSMatthew G. Knepley . pEnd - One past the last index for the subrange 100cab54364SBarry Smith - points - The indices for the entire range, from `ISGetPointRange()` 1016528b96dSMatthew G. Knepley 1026528b96dSMatthew G. Knepley Output Parameters: 103cab54364SBarry Smith . subpointIS - The `IS` object now configured to be a subrange 1046528b96dSMatthew G. Knepley 1056528b96dSMatthew G. Knepley Level: intermediate 1066528b96dSMatthew G. Knepley 107cab54364SBarry Smith Note: 108cab54364SBarry Smith The input `IS` will now respond properly to calls to `ISGetPointRange()` and return the subrange. 109cab54364SBarry Smith 110cab54364SBarry Smith .seealso: [](sec_scatter), `IS`, `ISGetPointRange()`, `ISRestorePointRange()`, `ISGetIndices()`, `ISCreateStride()` 1116528b96dSMatthew G. Knepley @*/ 112d71ae5a4SJacob Faibussowitsch PetscErrorCode ISGetPointSubrange(IS subpointIS, PetscInt pStart, PetscInt pEnd, const PetscInt *points) 113d71ae5a4SJacob Faibussowitsch { 1149305a4c7SMatthew G. Knepley PetscFunctionBeginHot; 1159305a4c7SMatthew G. Knepley if (points) { 1169566063dSJacob Faibussowitsch PetscCall(ISSetType(subpointIS, ISGENERAL)); 1179566063dSJacob Faibussowitsch PetscCall(ISGeneralSetIndices(subpointIS, pEnd - pStart, &points[pStart], PETSC_USE_POINTER)); 1189305a4c7SMatthew G. Knepley } else { 1199566063dSJacob Faibussowitsch PetscCall(ISSetType(subpointIS, ISSTRIDE)); 1209566063dSJacob Faibussowitsch PetscCall(ISStrideSetStride(subpointIS, pEnd - pStart, pStart, 1)); 1219305a4c7SMatthew G. Knepley } 1223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1239305a4c7SMatthew G. Knepley } 1249305a4c7SMatthew G. Knepley 125413f72f0SBarry Smith /* -----------------------------------------------------------------------------------------*/ 126413f72f0SBarry Smith 127413f72f0SBarry Smith /* 128413f72f0SBarry Smith Creates the global mapping information in the ISLocalToGlobalMapping structure 129413f72f0SBarry Smith 130413f72f0SBarry Smith If the user has not selected how to handle the global to local mapping then use HASH for "large" problems 131413f72f0SBarry Smith */ 132d71ae5a4SJacob Faibussowitsch static PetscErrorCode ISGlobalToLocalMappingSetUp(ISLocalToGlobalMapping mapping) 133d71ae5a4SJacob Faibussowitsch { 134413f72f0SBarry Smith PetscInt i, *idx = mapping->indices, n = mapping->n, end, start; 135413f72f0SBarry Smith 136413f72f0SBarry Smith PetscFunctionBegin; 1373ba16761SJacob Faibussowitsch if (mapping->data) PetscFunctionReturn(PETSC_SUCCESS); 138413f72f0SBarry Smith end = 0; 139413f72f0SBarry Smith start = PETSC_MAX_INT; 140413f72f0SBarry Smith 141413f72f0SBarry Smith for (i = 0; i < n; i++) { 142413f72f0SBarry Smith if (idx[i] < 0) continue; 143413f72f0SBarry Smith if (idx[i] < start) start = idx[i]; 144413f72f0SBarry Smith if (idx[i] > end) end = idx[i]; 145413f72f0SBarry Smith } 1469371c9d4SSatish Balay if (start > end) { 1479371c9d4SSatish Balay start = 0; 1489371c9d4SSatish Balay end = -1; 1499371c9d4SSatish Balay } 150413f72f0SBarry Smith mapping->globalstart = start; 151413f72f0SBarry Smith mapping->globalend = end; 152413f72f0SBarry Smith if (!((PetscObject)mapping)->type_name) { 153413f72f0SBarry Smith if ((end - start) > PetscMax(4 * n, 1000000)) { 1549566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingSetType(mapping, ISLOCALTOGLOBALMAPPINGHASH)); 155413f72f0SBarry Smith } else { 1569566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingSetType(mapping, ISLOCALTOGLOBALMAPPINGBASIC)); 157413f72f0SBarry Smith } 158413f72f0SBarry Smith } 159dbbe0bcdSBarry Smith PetscTryTypeMethod(mapping, globaltolocalmappingsetup); 1603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 161413f72f0SBarry Smith } 162413f72f0SBarry Smith 163d71ae5a4SJacob Faibussowitsch static PetscErrorCode ISGlobalToLocalMappingSetUp_Basic(ISLocalToGlobalMapping mapping) 164d71ae5a4SJacob Faibussowitsch { 165413f72f0SBarry Smith PetscInt i, *idx = mapping->indices, n = mapping->n, end, start, *globals; 166413f72f0SBarry Smith ISLocalToGlobalMapping_Basic *map; 167413f72f0SBarry Smith 168413f72f0SBarry Smith PetscFunctionBegin; 169413f72f0SBarry Smith start = mapping->globalstart; 170413f72f0SBarry Smith end = mapping->globalend; 1719566063dSJacob Faibussowitsch PetscCall(PetscNew(&map)); 1729566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(end - start + 2, &globals)); 173413f72f0SBarry Smith map->globals = globals; 174413f72f0SBarry Smith for (i = 0; i < end - start + 1; i++) globals[i] = -1; 175413f72f0SBarry Smith for (i = 0; i < n; i++) { 176413f72f0SBarry Smith if (idx[i] < 0) continue; 177413f72f0SBarry Smith globals[idx[i] - start] = i; 178413f72f0SBarry Smith } 179413f72f0SBarry Smith mapping->data = (void *)map; 1803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 181413f72f0SBarry Smith } 182413f72f0SBarry Smith 183d71ae5a4SJacob Faibussowitsch static PetscErrorCode ISGlobalToLocalMappingSetUp_Hash(ISLocalToGlobalMapping mapping) 184d71ae5a4SJacob Faibussowitsch { 185413f72f0SBarry Smith PetscInt i, *idx = mapping->indices, n = mapping->n; 186413f72f0SBarry Smith ISLocalToGlobalMapping_Hash *map; 187413f72f0SBarry Smith 188413f72f0SBarry Smith PetscFunctionBegin; 1899566063dSJacob Faibussowitsch PetscCall(PetscNew(&map)); 1909566063dSJacob Faibussowitsch PetscCall(PetscHMapICreate(&map->globalht)); 191413f72f0SBarry Smith for (i = 0; i < n; i++) { 192413f72f0SBarry Smith if (idx[i] < 0) continue; 1939566063dSJacob Faibussowitsch PetscCall(PetscHMapISet(map->globalht, idx[i], i)); 194413f72f0SBarry Smith } 195413f72f0SBarry Smith mapping->data = (void *)map; 1963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 197413f72f0SBarry Smith } 198413f72f0SBarry Smith 199d71ae5a4SJacob Faibussowitsch static PetscErrorCode ISLocalToGlobalMappingDestroy_Basic(ISLocalToGlobalMapping mapping) 200d71ae5a4SJacob Faibussowitsch { 201413f72f0SBarry Smith ISLocalToGlobalMapping_Basic *map = (ISLocalToGlobalMapping_Basic *)mapping->data; 202413f72f0SBarry Smith 203413f72f0SBarry Smith PetscFunctionBegin; 2043ba16761SJacob Faibussowitsch if (!map) PetscFunctionReturn(PETSC_SUCCESS); 2059566063dSJacob Faibussowitsch PetscCall(PetscFree(map->globals)); 2069566063dSJacob Faibussowitsch PetscCall(PetscFree(mapping->data)); 2073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 208413f72f0SBarry Smith } 209413f72f0SBarry Smith 210d71ae5a4SJacob Faibussowitsch static PetscErrorCode ISLocalToGlobalMappingDestroy_Hash(ISLocalToGlobalMapping mapping) 211d71ae5a4SJacob Faibussowitsch { 212413f72f0SBarry Smith ISLocalToGlobalMapping_Hash *map = (ISLocalToGlobalMapping_Hash *)mapping->data; 213413f72f0SBarry Smith 214413f72f0SBarry Smith PetscFunctionBegin; 2153ba16761SJacob Faibussowitsch if (!map) PetscFunctionReturn(PETSC_SUCCESS); 2169566063dSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&map->globalht)); 2179566063dSJacob Faibussowitsch PetscCall(PetscFree(mapping->data)); 2183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 219413f72f0SBarry Smith } 220413f72f0SBarry Smith 221413f72f0SBarry Smith #define GTOLTYPE _Basic 222413f72f0SBarry Smith #define GTOLNAME _Basic 223541bf97eSAdrian Croucher #define GTOLBS mapping->bs 2249371c9d4SSatish Balay #define GTOL(g, local) \ 2259371c9d4SSatish Balay do { \ 226413f72f0SBarry Smith local = map->globals[g / bs - start]; \ 2270040bde1SJunchao Zhang if (local >= 0) local = bs * local + (g % bs); \ 228413f72f0SBarry Smith } while (0) 229541bf97eSAdrian Croucher 230413f72f0SBarry Smith #include <../src/vec/is/utils/isltog.h> 231413f72f0SBarry Smith 232413f72f0SBarry Smith #define GTOLTYPE _Basic 233413f72f0SBarry Smith #define GTOLNAME Block_Basic 234541bf97eSAdrian Croucher #define GTOLBS 1 2359371c9d4SSatish Balay #define GTOL(g, local) \ 236d71ae5a4SJacob Faibussowitsch do { \ 237d71ae5a4SJacob Faibussowitsch local = map->globals[g - start]; \ 238d71ae5a4SJacob Faibussowitsch } while (0) 239413f72f0SBarry Smith #include <../src/vec/is/utils/isltog.h> 240413f72f0SBarry Smith 241413f72f0SBarry Smith #define GTOLTYPE _Hash 242413f72f0SBarry Smith #define GTOLNAME _Hash 243541bf97eSAdrian Croucher #define GTOLBS mapping->bs 2449371c9d4SSatish Balay #define GTOL(g, local) \ 2459371c9d4SSatish Balay do { \ 246e8f14785SLisandro Dalcin (void)PetscHMapIGet(map->globalht, g / bs, &local); \ 2470040bde1SJunchao Zhang if (local >= 0) local = bs * local + (g % bs); \ 248413f72f0SBarry Smith } while (0) 249413f72f0SBarry Smith #include <../src/vec/is/utils/isltog.h> 250413f72f0SBarry Smith 251413f72f0SBarry Smith #define GTOLTYPE _Hash 252413f72f0SBarry Smith #define GTOLNAME Block_Hash 253541bf97eSAdrian Croucher #define GTOLBS 1 2549371c9d4SSatish Balay #define GTOL(g, local) \ 255d71ae5a4SJacob Faibussowitsch do { \ 256d71ae5a4SJacob Faibussowitsch (void)PetscHMapIGet(map->globalht, g, &local); \ 257d71ae5a4SJacob Faibussowitsch } while (0) 258413f72f0SBarry Smith #include <../src/vec/is/utils/isltog.h> 259413f72f0SBarry Smith 2606658fb44Sstefano_zampini /*@ 2616658fb44Sstefano_zampini ISLocalToGlobalMappingDuplicate - Duplicates the local to global mapping object 2626658fb44Sstefano_zampini 2636658fb44Sstefano_zampini Not Collective 2646658fb44Sstefano_zampini 2656658fb44Sstefano_zampini Input Parameter: 2666658fb44Sstefano_zampini . ltog - local to global mapping 2676658fb44Sstefano_zampini 2686658fb44Sstefano_zampini Output Parameter: 2696658fb44Sstefano_zampini . nltog - the duplicated local to global mapping 2706658fb44Sstefano_zampini 2716658fb44Sstefano_zampini Level: advanced 2726658fb44Sstefano_zampini 273cab54364SBarry Smith .seealso: [](sec_scatter), `ISLocalToGlobalMapping`, `ISLocalToGlobalMappingDestroy()`, `ISLocalToGlobalMappingCreate()` 2746658fb44Sstefano_zampini @*/ 275d71ae5a4SJacob Faibussowitsch PetscErrorCode ISLocalToGlobalMappingDuplicate(ISLocalToGlobalMapping ltog, ISLocalToGlobalMapping *nltog) 276d71ae5a4SJacob Faibussowitsch { 277a0d79125SStefano Zampini ISLocalToGlobalMappingType l2gtype; 2786658fb44Sstefano_zampini 2796658fb44Sstefano_zampini PetscFunctionBegin; 2806658fb44Sstefano_zampini PetscValidHeaderSpecific(ltog, IS_LTOGM_CLASSID, 1); 2819566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreate(PetscObjectComm((PetscObject)ltog), ltog->bs, ltog->n, ltog->indices, PETSC_COPY_VALUES, nltog)); 2829566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetType(ltog, &l2gtype)); 2839566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingSetType(*nltog, l2gtype)); 2843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2856658fb44Sstefano_zampini } 2866658fb44Sstefano_zampini 287565245c5SBarry Smith /*@ 288107e9a97SBarry Smith ISLocalToGlobalMappingGetSize - Gets the local size of a local to global mapping 2893b9aefa3SBarry Smith 2903b9aefa3SBarry Smith Not Collective 2913b9aefa3SBarry Smith 2923b9aefa3SBarry Smith Input Parameter: 29338b5cf2dSJacob Faibussowitsch . mapping - local to global mapping 2943b9aefa3SBarry Smith 2953b9aefa3SBarry Smith Output Parameter: 296cab54364SBarry Smith . n - the number of entries in the local mapping, `ISLocalToGlobalMappingGetIndices()` returns an array of this length 2973b9aefa3SBarry Smith 2983b9aefa3SBarry Smith Level: advanced 2993b9aefa3SBarry Smith 300cab54364SBarry Smith .seealso: [](sec_scatter), `ISLocalToGlobalMapping`, `ISLocalToGlobalMappingDestroy()`, `ISLocalToGlobalMappingCreate()` 3013b9aefa3SBarry Smith @*/ 302d71ae5a4SJacob Faibussowitsch PetscErrorCode ISLocalToGlobalMappingGetSize(ISLocalToGlobalMapping mapping, PetscInt *n) 303d71ae5a4SJacob Faibussowitsch { 3043b9aefa3SBarry Smith PetscFunctionBegin; 3050700a824SBarry Smith PetscValidHeaderSpecific(mapping, IS_LTOGM_CLASSID, 1); 3064482741eSBarry Smith PetscValidIntPointer(n, 2); 307107e9a97SBarry Smith *n = mapping->bs * mapping->n; 3083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3093b9aefa3SBarry Smith } 3103b9aefa3SBarry Smith 3115a5d4f66SBarry Smith /*@C 312cab54364SBarry Smith ISLocalToGlobalMappingViewFromOptions - View an `ISLocalToGlobalMapping` based on values in the options database 313fe2efc57SMark 314c3339decSBarry Smith Collective 315fe2efc57SMark 316fe2efc57SMark Input Parameters: 317fe2efc57SMark + A - the local to global mapping object 31820662ed9SBarry Smith . obj - Optional object that provides the options prefix used for the options database query 319736c3998SJose E. Roman - name - command line option 320fe2efc57SMark 321fe2efc57SMark Level: intermediate 322cab54364SBarry Smith 32320662ed9SBarry Smith Note: 32420662ed9SBarry Smith See `PetscObjectViewFromOptions()` for the available `PetscViewer` and `PetscViewerFormat` 32520662ed9SBarry Smith 32620662ed9SBarry Smith .seealso: [](sec_scatter), `PetscViewer`, ``ISLocalToGlobalMapping`, `ISLocalToGlobalMappingView`, `PetscObjectViewFromOptions()`, `ISLocalToGlobalMappingCreate()` 327fe2efc57SMark @*/ 328d71ae5a4SJacob Faibussowitsch PetscErrorCode ISLocalToGlobalMappingViewFromOptions(ISLocalToGlobalMapping A, PetscObject obj, const char name[]) 329d71ae5a4SJacob Faibussowitsch { 330fe2efc57SMark PetscFunctionBegin; 331fe2efc57SMark PetscValidHeaderSpecific(A, IS_LTOGM_CLASSID, 1); 3329566063dSJacob Faibussowitsch PetscCall(PetscObjectViewFromOptions((PetscObject)A, obj, name)); 3333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 334fe2efc57SMark } 335fe2efc57SMark 336fe2efc57SMark /*@C 3375a5d4f66SBarry Smith ISLocalToGlobalMappingView - View a local to global mapping 3385a5d4f66SBarry Smith 339b9cd556bSLois Curfman McInnes Not Collective 340b9cd556bSLois Curfman McInnes 3415a5d4f66SBarry Smith Input Parameters: 34238b5cf2dSJacob Faibussowitsch + mapping - local to global mapping 3433b9aefa3SBarry Smith - viewer - viewer 3445a5d4f66SBarry Smith 345a997ad1aSLois Curfman McInnes Level: advanced 346a997ad1aSLois Curfman McInnes 34720662ed9SBarry Smith .seealso: [](sec_scatter), `PetscViewer`, `ISLocalToGlobalMapping`, `ISLocalToGlobalMappingDestroy()`, `ISLocalToGlobalMappingCreate()` 3485a5d4f66SBarry Smith @*/ 349d71ae5a4SJacob Faibussowitsch PetscErrorCode ISLocalToGlobalMappingView(ISLocalToGlobalMapping mapping, PetscViewer viewer) 350d71ae5a4SJacob Faibussowitsch { 35132dcc486SBarry Smith PetscInt i; 35232dcc486SBarry Smith PetscMPIInt rank; 353ace3abfcSBarry Smith PetscBool iascii; 3545a5d4f66SBarry Smith 3555a5d4f66SBarry Smith PetscFunctionBegin; 3560700a824SBarry Smith PetscValidHeaderSpecific(mapping, IS_LTOGM_CLASSID, 1); 35748a46eb9SPierre Jolivet if (!viewer) PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)mapping), &viewer)); 3580700a824SBarry Smith PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 3595a5d4f66SBarry Smith 3609566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mapping), &rank)); 3619566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 36232077d6dSBarry Smith if (iascii) { 3639566063dSJacob Faibussowitsch PetscCall(PetscObjectPrintClassNamePrefixType((PetscObject)mapping, viewer)); 3649566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 365f2c6b1a2SJed Brown for (i = 0; i < mapping->n; i++) { 366f2c6b1a2SJed Brown PetscInt bs = mapping->bs, g = mapping->indices[i]; 367f2c6b1a2SJed Brown if (bs == 1) PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] %" PetscInt_FMT " %" PetscInt_FMT "\n", rank, i, g)); 368f2c6b1a2SJed Brown else PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] %" PetscInt_FMT ":%" PetscInt_FMT " %" PetscInt_FMT ":%" PetscInt_FMT "\n", rank, i * bs, (i + 1) * bs, g * bs, (g + 1) * bs)); 369f2c6b1a2SJed Brown } 3709566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 3719566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 3721575c14dSBarry Smith } 3733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3745a5d4f66SBarry Smith } 3755a5d4f66SBarry Smith 3761f428162SBarry Smith /*@ 3772bdab257SBarry Smith ISLocalToGlobalMappingCreateIS - Creates a mapping between a local (0 to n) 3782bdab257SBarry Smith ordering and a global parallel ordering. 3792bdab257SBarry Smith 38020662ed9SBarry Smith Not Collective 381b9cd556bSLois Curfman McInnes 382a997ad1aSLois Curfman McInnes Input Parameter: 3838c03b21aSDmitry Karpeev . is - index set containing the global numbers for each local number 3842bdab257SBarry Smith 385a997ad1aSLois Curfman McInnes Output Parameter: 3862bdab257SBarry Smith . mapping - new mapping data structure 3872bdab257SBarry Smith 388a997ad1aSLois Curfman McInnes Level: advanced 389a997ad1aSLois Curfman McInnes 390cab54364SBarry Smith Note: 391cab54364SBarry Smith the block size of the `IS` determines the block size of the mapping 392cab54364SBarry Smith 393cab54364SBarry Smith .seealso: [](sec_scatter), `ISLocalToGlobalMapping`, `ISLocalToGlobalMappingDestroy()`, `ISLocalToGlobalMappingCreate()`, `ISLocalToGlobalMappingSetFromOptions()` 3942bdab257SBarry Smith @*/ 395d71ae5a4SJacob Faibussowitsch PetscErrorCode ISLocalToGlobalMappingCreateIS(IS is, ISLocalToGlobalMapping *mapping) 396d71ae5a4SJacob Faibussowitsch { 3973bbf0e92SBarry Smith PetscInt n, bs; 3985d0c19d7SBarry Smith const PetscInt *indices; 3992bdab257SBarry Smith MPI_Comm comm; 4003bbf0e92SBarry Smith PetscBool isblock; 4013a40ed3dSBarry Smith 4023a40ed3dSBarry Smith PetscFunctionBegin; 4030700a824SBarry Smith PetscValidHeaderSpecific(is, IS_CLASSID, 1); 4044482741eSBarry Smith PetscValidPointer(mapping, 2); 4052bdab257SBarry Smith 4069566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)is, &comm)); 4079566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(is, &n)); 4089566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)is, ISBLOCK, &isblock)); 4096006e8d2SBarry Smith if (!isblock) { 4109566063dSJacob Faibussowitsch PetscCall(ISGetIndices(is, &indices)); 4119566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreate(comm, 1, n, indices, PETSC_COPY_VALUES, mapping)); 4129566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(is, &indices)); 4136006e8d2SBarry Smith } else { 4149566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(is, &bs)); 4159566063dSJacob Faibussowitsch PetscCall(ISBlockGetIndices(is, &indices)); 4169566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreate(comm, bs, n / bs, indices, PETSC_COPY_VALUES, mapping)); 4179566063dSJacob Faibussowitsch PetscCall(ISBlockRestoreIndices(is, &indices)); 4186006e8d2SBarry Smith } 4193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4202bdab257SBarry Smith } 4215a5d4f66SBarry Smith 422a4d96a55SJed Brown /*@C 423a4d96a55SJed Brown ISLocalToGlobalMappingCreateSF - Creates a mapping between a local (0 to n) 424a4d96a55SJed Brown ordering and a global parallel ordering. 425a4d96a55SJed Brown 426a4d96a55SJed Brown Collective 427a4d96a55SJed Brown 428d8d19677SJose E. Roman Input Parameters: 429a4d96a55SJed Brown + sf - star forest mapping contiguous local indices to (rank, offset) 430cab54364SBarry Smith - start - first global index on this process, or `PETSC_DECIDE` to compute contiguous global numbering automatically 431a4d96a55SJed Brown 432a4d96a55SJed Brown Output Parameter: 433a4d96a55SJed Brown . mapping - new mapping data structure 434a4d96a55SJed Brown 435a4d96a55SJed Brown Level: advanced 436a4d96a55SJed Brown 43720662ed9SBarry Smith Note: 43820662ed9SBarry Smith If any processor calls this with `start` = `PETSC_DECIDE` then all processors must, otherwise the program will hang. 4399a535bafSVaclav Hapla 440cab54364SBarry Smith .seealso: [](sec_scatter), `PetscSF`, `ISLocalToGlobalMappingDestroy()`, `ISLocalToGlobalMappingCreate()`, `ISLocalToGlobalMappingCreateIS()`, `ISLocalToGlobalMappingSetFromOptions()` 441a4d96a55SJed Brown @*/ 442d71ae5a4SJacob Faibussowitsch PetscErrorCode ISLocalToGlobalMappingCreateSF(PetscSF sf, PetscInt start, ISLocalToGlobalMapping *mapping) 443d71ae5a4SJacob Faibussowitsch { 444a4d96a55SJed Brown PetscInt i, maxlocal, nroots, nleaves, *globals, *ltog; 445a4d96a55SJed Brown MPI_Comm comm; 446a4d96a55SJed Brown 447a4d96a55SJed Brown PetscFunctionBegin; 448a4d96a55SJed Brown PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 449a4d96a55SJed Brown PetscValidPointer(mapping, 3); 4509566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)sf, &comm)); 45141f4c31fSVaclav Hapla PetscCall(PetscSFGetGraph(sf, &nroots, &nleaves, NULL, NULL)); 4529a535bafSVaclav Hapla if (start == PETSC_DECIDE) { 4539a535bafSVaclav Hapla start = 0; 4549566063dSJacob Faibussowitsch PetscCallMPI(MPI_Exscan(&nroots, &start, 1, MPIU_INT, MPI_SUM, comm)); 45541f4c31fSVaclav Hapla } else PetscCheck(start >= 0, comm, PETSC_ERR_ARG_OUTOFRANGE, "start must be nonnegative or PETSC_DECIDE"); 45641f4c31fSVaclav Hapla PetscCall(PetscSFGetLeafRange(sf, NULL, &maxlocal)); 45741f4c31fSVaclav Hapla ++maxlocal; 4589566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nroots, &globals)); 4599566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(maxlocal, <og)); 460a4d96a55SJed Brown for (i = 0; i < nroots; i++) globals[i] = start + i; 461a4d96a55SJed Brown for (i = 0; i < maxlocal; i++) ltog[i] = -1; 4629566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, globals, ltog, MPI_REPLACE)); 4639566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, globals, ltog, MPI_REPLACE)); 4649566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreate(comm, 1, maxlocal, ltog, PETSC_OWN_POINTER, mapping)); 4659566063dSJacob Faibussowitsch PetscCall(PetscFree(globals)); 4663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 467a4d96a55SJed Brown } 468b46b645bSBarry Smith 46963fa5c83Sstefano_zampini /*@ 47063fa5c83Sstefano_zampini ISLocalToGlobalMappingSetBlockSize - Sets the blocksize of the mapping 47163fa5c83Sstefano_zampini 47220662ed9SBarry Smith Not Collective 47363fa5c83Sstefano_zampini 47463fa5c83Sstefano_zampini Input Parameters: 475a2b725a8SWilliam Gropp + mapping - mapping data structure 476a2b725a8SWilliam Gropp - bs - the blocksize 47763fa5c83Sstefano_zampini 47863fa5c83Sstefano_zampini Level: advanced 47963fa5c83Sstefano_zampini 480cab54364SBarry Smith .seealso: [](sec_scatter), `ISLocalToGlobalMapping`, `ISLocalToGlobalMappingDestroy()`, `ISLocalToGlobalMappingCreateIS()` 48163fa5c83Sstefano_zampini @*/ 482d71ae5a4SJacob Faibussowitsch PetscErrorCode ISLocalToGlobalMappingSetBlockSize(ISLocalToGlobalMapping mapping, PetscInt bs) 483d71ae5a4SJacob Faibussowitsch { 484a59f3c4dSstefano_zampini PetscInt *nid; 485a59f3c4dSstefano_zampini const PetscInt *oid; 486a59f3c4dSstefano_zampini PetscInt i, cn, on, obs, nn; 48763fa5c83Sstefano_zampini 48863fa5c83Sstefano_zampini PetscFunctionBegin; 48963fa5c83Sstefano_zampini PetscValidHeaderSpecific(mapping, IS_LTOGM_CLASSID, 1); 49008401ef6SPierre Jolivet PetscCheck(bs >= 1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid block size %" PetscInt_FMT, bs); 4913ba16761SJacob Faibussowitsch if (bs == mapping->bs) PetscFunctionReturn(PETSC_SUCCESS); 49263fa5c83Sstefano_zampini on = mapping->n; 49363fa5c83Sstefano_zampini obs = mapping->bs; 49463fa5c83Sstefano_zampini oid = mapping->indices; 49563fa5c83Sstefano_zampini nn = (on * obs) / bs; 49608401ef6SPierre Jolivet PetscCheck((on * obs) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Block size %" PetscInt_FMT " is inconsistent with block size %" PetscInt_FMT " and number of block indices %" PetscInt_FMT, bs, obs, on); 497a59f3c4dSstefano_zampini 4989566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nn, &nid)); 4999566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetIndices(mapping, &oid)); 500a59f3c4dSstefano_zampini for (i = 0; i < nn; i++) { 501a59f3c4dSstefano_zampini PetscInt j; 502a59f3c4dSstefano_zampini for (j = 0, cn = 0; j < bs - 1; j++) { 5039371c9d4SSatish Balay if (oid[i * bs + j] < 0) { 5049371c9d4SSatish Balay cn++; 5059371c9d4SSatish Balay continue; 5069371c9d4SSatish Balay } 50708401ef6SPierre Jolivet PetscCheck(oid[i * bs + j] == oid[i * bs + j + 1] - 1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Block sizes %" PetscInt_FMT " and %" PetscInt_FMT " are incompatible with the block indices: non consecutive indices %" PetscInt_FMT " %" PetscInt_FMT, bs, obs, oid[i * bs + j], oid[i * bs + j + 1]); 508a59f3c4dSstefano_zampini } 509a59f3c4dSstefano_zampini if (oid[i * bs + j] < 0) cn++; 5108b7cb0e6Sstefano_zampini if (cn) { 51108401ef6SPierre Jolivet PetscCheck(cn == bs, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Block sizes %" PetscInt_FMT " and %" PetscInt_FMT " are incompatible with the block indices: invalid number of negative entries in block %" PetscInt_FMT, bs, obs, cn); 512a59f3c4dSstefano_zampini nid[i] = -1; 5138b7cb0e6Sstefano_zampini } else { 514a59f3c4dSstefano_zampini nid[i] = oid[i * bs] / bs; 51563fa5c83Sstefano_zampini } 51663fa5c83Sstefano_zampini } 5179566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingRestoreIndices(mapping, &oid)); 518a59f3c4dSstefano_zampini 51963fa5c83Sstefano_zampini mapping->n = nn; 52063fa5c83Sstefano_zampini mapping->bs = bs; 5219566063dSJacob Faibussowitsch PetscCall(PetscFree(mapping->indices)); 52263fa5c83Sstefano_zampini mapping->indices = nid; 523c9345713Sstefano_zampini mapping->globalstart = 0; 524c9345713Sstefano_zampini mapping->globalend = 0; 5251bd0b88eSStefano Zampini 5261bd0b88eSStefano Zampini /* reset the cached information */ 5279566063dSJacob Faibussowitsch PetscCall(PetscFree(mapping->info_procs)); 5289566063dSJacob Faibussowitsch PetscCall(PetscFree(mapping->info_numprocs)); 5291bd0b88eSStefano Zampini if (mapping->info_indices) { 5301bd0b88eSStefano Zampini PetscInt i; 5311bd0b88eSStefano Zampini 5329566063dSJacob Faibussowitsch PetscCall(PetscFree((mapping->info_indices)[0])); 53348a46eb9SPierre Jolivet for (i = 1; i < mapping->info_nproc; i++) PetscCall(PetscFree(mapping->info_indices[i])); 5349566063dSJacob Faibussowitsch PetscCall(PetscFree(mapping->info_indices)); 5351bd0b88eSStefano Zampini } 5361bd0b88eSStefano Zampini mapping->info_cached = PETSC_FALSE; 5371bd0b88eSStefano Zampini 538dbbe0bcdSBarry Smith PetscTryTypeMethod(mapping, destroy); 5393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 54063fa5c83Sstefano_zampini } 54163fa5c83Sstefano_zampini 54245b6f7e9SBarry Smith /*@ 54345b6f7e9SBarry Smith ISLocalToGlobalMappingGetBlockSize - Gets the blocksize of the mapping 54445b6f7e9SBarry Smith ordering and a global parallel ordering. 54545b6f7e9SBarry Smith 54645b6f7e9SBarry Smith Not Collective 54745b6f7e9SBarry Smith 5482fe279fdSBarry Smith Input Parameter: 54945b6f7e9SBarry Smith . mapping - mapping data structure 55045b6f7e9SBarry Smith 55145b6f7e9SBarry Smith Output Parameter: 55245b6f7e9SBarry Smith . bs - the blocksize 55345b6f7e9SBarry Smith 55445b6f7e9SBarry Smith Level: advanced 55545b6f7e9SBarry Smith 556cab54364SBarry Smith .seealso: [](sec_scatter), `ISLocalToGlobalMapping`, `ISLocalToGlobalMappingDestroy()`, `ISLocalToGlobalMappingCreateIS()` 55745b6f7e9SBarry Smith @*/ 558d71ae5a4SJacob Faibussowitsch PetscErrorCode ISLocalToGlobalMappingGetBlockSize(ISLocalToGlobalMapping mapping, PetscInt *bs) 559d71ae5a4SJacob Faibussowitsch { 56045b6f7e9SBarry Smith PetscFunctionBegin; 561cbc1caf0SMatthew G. Knepley PetscValidHeaderSpecific(mapping, IS_LTOGM_CLASSID, 1); 56245b6f7e9SBarry Smith *bs = mapping->bs; 5633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 56445b6f7e9SBarry Smith } 56545b6f7e9SBarry Smith 566ba5bb76aSSatish Balay /*@ 56790f02eecSBarry Smith ISLocalToGlobalMappingCreate - Creates a mapping between a local (0 to n) 56890f02eecSBarry Smith ordering and a global parallel ordering. 5692362add9SBarry Smith 57089d82c54SBarry Smith Not Collective, but communicator may have more than one process 571b9cd556bSLois Curfman McInnes 5722362add9SBarry Smith Input Parameters: 57389d82c54SBarry Smith + comm - MPI communicator 574f0413b6fSBarry Smith . bs - the block size 57528bc9809SBarry Smith . n - the number of local elements divided by the block size, or equivalently the number of block indices 57628bc9809SBarry Smith . indices - the global index for each local element, these do not need to be in increasing order (sorted), these values should not be scaled (i.e. multiplied) by the blocksize bs 577d5ad8652SBarry Smith - mode - see PetscCopyMode 5782362add9SBarry Smith 579a997ad1aSLois Curfman McInnes Output Parameter: 58090f02eecSBarry Smith . mapping - new mapping data structure 5812362add9SBarry Smith 582cab54364SBarry Smith Level: advanced 583cab54364SBarry Smith 58495452b02SPatrick Sanan Notes: 58595452b02SPatrick Sanan There is one integer value in indices per block and it represents the actual indices bs*idx + j, where j=0,..,bs-1 586413f72f0SBarry Smith 587cab54364SBarry Smith For "small" problems when using `ISGlobalToLocalMappingApply()` and `ISGlobalToLocalMappingApplyBlock()`, the `ISLocalToGlobalMappingType` 588cab54364SBarry Smith of `ISLOCALTOGLOBALMAPPINGBASIC` will be used; this uses more memory but is faster; this approach is not scalable for extremely large mappings. 589413f72f0SBarry Smith 590cab54364SBarry Smith For large problems `ISLOCALTOGLOBALMAPPINGHASH` is used, this is scalable. 59120662ed9SBarry Smith Use `ISLocalToGlobalMappingSetType()` or call `ISLocalToGlobalMappingSetFromOptions()` with the option 59220662ed9SBarry Smith `-islocaltoglobalmapping_type` <`basic`,`hash`> to control which is used. 593a997ad1aSLois Curfman McInnes 59420662ed9SBarry Smith .seealso: [](sec_scatter), `ISLocalToGlobalMapping`, `ISLocalToGlobalMappingDestroy()`, `ISLocalToGlobalMappingCreateIS()`, `ISLocalToGlobalMappingSetFromOptions()`, 59520662ed9SBarry Smith `ISLOCALTOGLOBALMAPPINGBASIC`, `ISLOCALTOGLOBALMAPPINGHASH` 596db781477SPatrick Sanan `ISLocalToGlobalMappingSetType()`, `ISLocalToGlobalMappingType` 5972362add9SBarry Smith @*/ 598d71ae5a4SJacob Faibussowitsch PetscErrorCode ISLocalToGlobalMappingCreate(MPI_Comm comm, PetscInt bs, PetscInt n, const PetscInt indices[], PetscCopyMode mode, ISLocalToGlobalMapping *mapping) 599d71ae5a4SJacob Faibussowitsch { 60032dcc486SBarry Smith PetscInt *in; 601b46b645bSBarry Smith 602b46b645bSBarry Smith PetscFunctionBegin; 603064a246eSJacob Faibussowitsch if (n) PetscValidIntPointer(indices, 4); 604064a246eSJacob Faibussowitsch PetscValidPointer(mapping, 6); 605b46b645bSBarry Smith 6060298fd71SBarry Smith *mapping = NULL; 6079566063dSJacob Faibussowitsch PetscCall(ISInitializePackage()); 6082362add9SBarry Smith 6099566063dSJacob Faibussowitsch PetscCall(PetscHeaderCreate(*mapping, IS_LTOGM_CLASSID, "ISLocalToGlobalMapping", "Local to global mapping", "IS", comm, ISLocalToGlobalMappingDestroy, ISLocalToGlobalMappingView)); 610d4bb536fSBarry Smith (*mapping)->n = n; 611f0413b6fSBarry Smith (*mapping)->bs = bs; 612d5ad8652SBarry Smith if (mode == PETSC_COPY_VALUES) { 6139566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &in)); 6149566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(in, indices, n)); 615d5ad8652SBarry Smith (*mapping)->indices = in; 61671910c26SVaclav Hapla (*mapping)->dealloc_indices = PETSC_TRUE; 6176389a1a1SBarry Smith } else if (mode == PETSC_OWN_POINTER) { 6186389a1a1SBarry Smith (*mapping)->indices = (PetscInt *)indices; 61971910c26SVaclav Hapla (*mapping)->dealloc_indices = PETSC_TRUE; 62071910c26SVaclav Hapla } else if (mode == PETSC_USE_POINTER) { 62171910c26SVaclav Hapla (*mapping)->indices = (PetscInt *)indices; 6229371c9d4SSatish Balay } else SETERRQ(comm, PETSC_ERR_ARG_OUTOFRANGE, "Invalid mode %d", mode); 6233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6242362add9SBarry Smith } 6252362add9SBarry Smith 626413f72f0SBarry Smith PetscFunctionList ISLocalToGlobalMappingList = NULL; 627413f72f0SBarry Smith 62890f02eecSBarry Smith /*@ 6297e99dc12SLawrence Mitchell ISLocalToGlobalMappingSetFromOptions - Set mapping options from the options database. 6307e99dc12SLawrence Mitchell 63120662ed9SBarry Smith Not Collective 6327e99dc12SLawrence Mitchell 6332fe279fdSBarry Smith Input Parameter: 6347e99dc12SLawrence Mitchell . mapping - mapping data structure 6357e99dc12SLawrence Mitchell 63620662ed9SBarry Smith Options Database Key: 63720662ed9SBarry Smith . -islocaltoglobalmapping_type - <basic,hash> nonscalable and scalable versions 63820662ed9SBarry Smith 6397e99dc12SLawrence Mitchell Level: advanced 6407e99dc12SLawrence Mitchell 64120662ed9SBarry Smith .seealso: [](sec_scatter), `ISLocalToGlobalMapping`, `ISLocalToGlobalMappingDestroy()`, `ISLocalToGlobalMappingCreateIS()`, `ISLocalToGlobalMappingSetFromOptions()`, 64220662ed9SBarry Smith `ISLOCALTOGLOBALMAPPINGBASIC`, `ISLOCALTOGLOBALMAPPINGHASH` 643cab54364SBarry Smith `ISLocalToGlobalMappingSetType()`, `ISLocalToGlobalMappingType` 6447e99dc12SLawrence Mitchell @*/ 645d71ae5a4SJacob Faibussowitsch PetscErrorCode ISLocalToGlobalMappingSetFromOptions(ISLocalToGlobalMapping mapping) 646d71ae5a4SJacob Faibussowitsch { 647413f72f0SBarry Smith char type[256]; 648413f72f0SBarry Smith ISLocalToGlobalMappingType defaulttype = "Not set"; 6497e99dc12SLawrence Mitchell PetscBool flg; 6507e99dc12SLawrence Mitchell 6517e99dc12SLawrence Mitchell PetscFunctionBegin; 6527e99dc12SLawrence Mitchell PetscValidHeaderSpecific(mapping, IS_LTOGM_CLASSID, 1); 6539566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingRegisterAll()); 654d0609cedSBarry Smith PetscObjectOptionsBegin((PetscObject)mapping); 6559566063dSJacob Faibussowitsch PetscCall(PetscOptionsFList("-islocaltoglobalmapping_type", "ISLocalToGlobalMapping method", "ISLocalToGlobalMappingSetType", ISLocalToGlobalMappingList, (char *)(((PetscObject)mapping)->type_name) ? ((PetscObject)mapping)->type_name : defaulttype, type, 256, &flg)); 6561baa6e33SBarry Smith if (flg) PetscCall(ISLocalToGlobalMappingSetType(mapping, type)); 657d0609cedSBarry Smith PetscOptionsEnd(); 6583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6597e99dc12SLawrence Mitchell } 6607e99dc12SLawrence Mitchell 6617e99dc12SLawrence Mitchell /*@ 66290f02eecSBarry Smith ISLocalToGlobalMappingDestroy - Destroys a mapping between a local (0 to n) 66390f02eecSBarry Smith ordering and a global parallel ordering. 66490f02eecSBarry Smith 66520662ed9SBarry Smith Not Collective 666b9cd556bSLois Curfman McInnes 6672fe279fdSBarry Smith Input Parameter: 66890f02eecSBarry Smith . mapping - mapping data structure 66990f02eecSBarry Smith 670a997ad1aSLois Curfman McInnes Level: advanced 671a997ad1aSLois Curfman McInnes 672cab54364SBarry Smith .seealso: [](sec_scatter), `ISLocalToGlobalMapping`, `ISLocalToGlobalMappingCreate()` 67390f02eecSBarry Smith @*/ 674d71ae5a4SJacob Faibussowitsch PetscErrorCode ISLocalToGlobalMappingDestroy(ISLocalToGlobalMapping *mapping) 675d71ae5a4SJacob Faibussowitsch { 6763a40ed3dSBarry Smith PetscFunctionBegin; 6773ba16761SJacob Faibussowitsch if (!*mapping) PetscFunctionReturn(PETSC_SUCCESS); 6786bf464f9SBarry Smith PetscValidHeaderSpecific((*mapping), IS_LTOGM_CLASSID, 1); 6799371c9d4SSatish Balay if (--((PetscObject)(*mapping))->refct > 0) { 6809371c9d4SSatish Balay *mapping = NULL; 6813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 68271910c26SVaclav Hapla } 68348a46eb9SPierre Jolivet if ((*mapping)->dealloc_indices) PetscCall(PetscFree((*mapping)->indices)); 6849566063dSJacob Faibussowitsch PetscCall(PetscFree((*mapping)->info_procs)); 6859566063dSJacob Faibussowitsch PetscCall(PetscFree((*mapping)->info_numprocs)); 686268a049cSStefano Zampini if ((*mapping)->info_indices) { 687268a049cSStefano Zampini PetscInt i; 688268a049cSStefano Zampini 6899566063dSJacob Faibussowitsch PetscCall(PetscFree(((*mapping)->info_indices)[0])); 69048a46eb9SPierre Jolivet for (i = 1; i < (*mapping)->info_nproc; i++) PetscCall(PetscFree(((*mapping)->info_indices)[i])); 6919566063dSJacob Faibussowitsch PetscCall(PetscFree((*mapping)->info_indices)); 692268a049cSStefano Zampini } 69348a46eb9SPierre Jolivet if ((*mapping)->info_nodei) PetscCall(PetscFree(((*mapping)->info_nodei)[0])); 6949566063dSJacob Faibussowitsch PetscCall(PetscFree2((*mapping)->info_nodec, (*mapping)->info_nodei)); 69548a46eb9SPierre Jolivet if ((*mapping)->ops->destroy) PetscCall((*(*mapping)->ops->destroy)(*mapping)); 6969566063dSJacob Faibussowitsch PetscCall(PetscHeaderDestroy(mapping)); 6974c8fdceaSLisandro Dalcin *mapping = NULL; 6983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 69990f02eecSBarry Smith } 70090f02eecSBarry Smith 70190f02eecSBarry Smith /*@ 702cab54364SBarry Smith ISLocalToGlobalMappingApplyIS - Creates from an `IS` in the local numbering 703cab54364SBarry Smith a new index set using the global numbering defined in an `ISLocalToGlobalMapping` 7043acfe500SLois Curfman McInnes context. 70590f02eecSBarry Smith 706c3339decSBarry Smith Collective 707b9cd556bSLois Curfman McInnes 70890f02eecSBarry Smith Input Parameters: 709b9cd556bSLois Curfman McInnes + mapping - mapping between local and global numbering 710b9cd556bSLois Curfman McInnes - is - index set in local numbering 71190f02eecSBarry Smith 712cab54364SBarry Smith Output Parameter: 71390f02eecSBarry Smith . newis - index set in global numbering 71490f02eecSBarry Smith 715a997ad1aSLois Curfman McInnes Level: advanced 716a997ad1aSLois Curfman McInnes 717cab54364SBarry Smith Note: 71820662ed9SBarry Smith The output `IS` will have the same communicator as the input `IS`. 719cab54364SBarry Smith 720cab54364SBarry Smith .seealso: [](sec_scatter), `ISLocalToGlobalMappingApply()`, `ISLocalToGlobalMappingCreate()`, 721db781477SPatrick Sanan `ISLocalToGlobalMappingDestroy()`, `ISGlobalToLocalMappingApply()` 72290f02eecSBarry Smith @*/ 723d71ae5a4SJacob Faibussowitsch PetscErrorCode ISLocalToGlobalMappingApplyIS(ISLocalToGlobalMapping mapping, IS is, IS *newis) 724d71ae5a4SJacob Faibussowitsch { 725e24637baSBarry Smith PetscInt n, *idxout; 7265d0c19d7SBarry Smith const PetscInt *idxin; 7273a40ed3dSBarry Smith 7283a40ed3dSBarry Smith PetscFunctionBegin; 7290700a824SBarry Smith PetscValidHeaderSpecific(mapping, IS_LTOGM_CLASSID, 1); 7300700a824SBarry Smith PetscValidHeaderSpecific(is, IS_CLASSID, 2); 7314482741eSBarry Smith PetscValidPointer(newis, 3); 73290f02eecSBarry Smith 7339566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(is, &n)); 7349566063dSJacob Faibussowitsch PetscCall(ISGetIndices(is, &idxin)); 7359566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &idxout)); 7369566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingApply(mapping, n, idxin, idxout)); 7379566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(is, &idxin)); 7389566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)is), n, idxout, PETSC_OWN_POINTER, newis)); 7393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 74090f02eecSBarry Smith } 74190f02eecSBarry Smith 742b89cb25eSSatish Balay /*@ 7433acfe500SLois Curfman McInnes ISLocalToGlobalMappingApply - Takes a list of integers in a local numbering 7443acfe500SLois Curfman McInnes and converts them to the global numbering. 74590f02eecSBarry Smith 74620662ed9SBarry Smith Not Collective 747b9cd556bSLois Curfman McInnes 748bb25748dSBarry Smith Input Parameters: 749b9cd556bSLois Curfman McInnes + mapping - the local to global mapping context 750bb25748dSBarry Smith . N - number of integers 751b9cd556bSLois Curfman McInnes - in - input indices in local numbering 752bb25748dSBarry Smith 753bb25748dSBarry Smith Output Parameter: 754bb25748dSBarry Smith . out - indices in global numbering 755bb25748dSBarry Smith 756a997ad1aSLois Curfman McInnes Level: advanced 757a997ad1aSLois Curfman McInnes 758cab54364SBarry Smith Note: 75920662ed9SBarry Smith The `in` and `out` array parameters may be identical. 760cab54364SBarry Smith 761cab54364SBarry Smith .seealso: [](sec_scatter), `ISLocalToGlobalMapping`, `ISLocalToGlobalMappingApplyBlock()`, `ISLocalToGlobalMappingCreate()`, `ISLocalToGlobalMappingDestroy()`, 762c2e3fba1SPatrick Sanan `ISLocalToGlobalMappingApplyIS()`, `AOCreateBasic()`, `AOApplicationToPetsc()`, 763db781477SPatrick Sanan `AOPetscToApplication()`, `ISGlobalToLocalMappingApply()` 764afcb2eb5SJed Brown @*/ 765d71ae5a4SJacob Faibussowitsch PetscErrorCode ISLocalToGlobalMappingApply(ISLocalToGlobalMapping mapping, PetscInt N, const PetscInt in[], PetscInt out[]) 766d71ae5a4SJacob Faibussowitsch { 767cbc1caf0SMatthew G. Knepley PetscInt i, bs, Nmax; 76845b6f7e9SBarry Smith 76945b6f7e9SBarry Smith PetscFunctionBegin; 770cbc1caf0SMatthew G. Knepley PetscValidHeaderSpecific(mapping, IS_LTOGM_CLASSID, 1); 771cbc1caf0SMatthew G. Knepley bs = mapping->bs; 772cbc1caf0SMatthew G. Knepley Nmax = bs * mapping->n; 77345b6f7e9SBarry Smith if (bs == 1) { 774cbc1caf0SMatthew G. Knepley const PetscInt *idx = mapping->indices; 77545b6f7e9SBarry Smith for (i = 0; i < N; i++) { 77645b6f7e9SBarry Smith if (in[i] < 0) { 77745b6f7e9SBarry Smith out[i] = in[i]; 77845b6f7e9SBarry Smith continue; 77945b6f7e9SBarry Smith } 78008401ef6SPierre Jolivet PetscCheck(in[i] < Nmax, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local index %" PetscInt_FMT " too large %" PetscInt_FMT " (max) at %" PetscInt_FMT, in[i], Nmax - 1, i); 78145b6f7e9SBarry Smith out[i] = idx[in[i]]; 78245b6f7e9SBarry Smith } 78345b6f7e9SBarry Smith } else { 784cbc1caf0SMatthew G. Knepley const PetscInt *idx = mapping->indices; 78545b6f7e9SBarry Smith for (i = 0; i < N; i++) { 78645b6f7e9SBarry Smith if (in[i] < 0) { 78745b6f7e9SBarry Smith out[i] = in[i]; 78845b6f7e9SBarry Smith continue; 78945b6f7e9SBarry Smith } 79008401ef6SPierre Jolivet PetscCheck(in[i] < Nmax, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local index %" PetscInt_FMT " too large %" PetscInt_FMT " (max) at %" PetscInt_FMT, in[i], Nmax - 1, i); 79145b6f7e9SBarry Smith out[i] = idx[in[i] / bs] * bs + (in[i] % bs); 79245b6f7e9SBarry Smith } 79345b6f7e9SBarry Smith } 7943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 79545b6f7e9SBarry Smith } 79645b6f7e9SBarry Smith 79745b6f7e9SBarry Smith /*@ 7986006e8d2SBarry Smith ISLocalToGlobalMappingApplyBlock - Takes a list of integers in a local block numbering and converts them to the global block numbering 79945b6f7e9SBarry Smith 80020662ed9SBarry Smith Not Collective 80145b6f7e9SBarry Smith 80245b6f7e9SBarry Smith Input Parameters: 80345b6f7e9SBarry Smith + mapping - the local to global mapping context 80445b6f7e9SBarry Smith . N - number of integers 8056006e8d2SBarry Smith - in - input indices in local block numbering 80645b6f7e9SBarry Smith 80745b6f7e9SBarry Smith Output Parameter: 8086006e8d2SBarry Smith . out - indices in global block numbering 80945b6f7e9SBarry Smith 8106006e8d2SBarry Smith Example: 811cab54364SBarry Smith If the index values are {0,1,6,7} set with a call to `ISLocalToGlobalMappingCreate`(`PETSC_COMM_SELF`,2,2,{0,3}) then the mapping applied to 0 8126006e8d2SBarry Smith (the first block) would produce 0 and the mapping applied to 1 (the second block) would produce 3. 8136006e8d2SBarry Smith 81420662ed9SBarry Smith Level: advanced 81520662ed9SBarry Smith 81620662ed9SBarry Smith Note: 81720662ed9SBarry Smith The `in` and `out` array parameters may be identical. 81820662ed9SBarry Smith 819cab54364SBarry Smith .seealso: [](sec_scatter), `ISLocalToGlobalMappingApply()`, `ISLocalToGlobalMappingCreate()`, `ISLocalToGlobalMappingDestroy()`, 820c2e3fba1SPatrick Sanan `ISLocalToGlobalMappingApplyIS()`, `AOCreateBasic()`, `AOApplicationToPetsc()`, 821db781477SPatrick Sanan `AOPetscToApplication()`, `ISGlobalToLocalMappingApply()` 82245b6f7e9SBarry Smith @*/ 823d71ae5a4SJacob Faibussowitsch PetscErrorCode ISLocalToGlobalMappingApplyBlock(ISLocalToGlobalMapping mapping, PetscInt N, const PetscInt in[], PetscInt out[]) 824d71ae5a4SJacob Faibussowitsch { 8258a1f772fSStefano Zampini PetscInt i, Nmax; 8268a1f772fSStefano Zampini const PetscInt *idx; 827d4bb536fSBarry Smith 828a0d79125SStefano Zampini PetscFunctionBegin; 829a0d79125SStefano Zampini PetscValidHeaderSpecific(mapping, IS_LTOGM_CLASSID, 1); 8308a1f772fSStefano Zampini Nmax = mapping->n; 8318a1f772fSStefano Zampini idx = mapping->indices; 832afcb2eb5SJed Brown for (i = 0; i < N; i++) { 833afcb2eb5SJed Brown if (in[i] < 0) { 834afcb2eb5SJed Brown out[i] = in[i]; 835afcb2eb5SJed Brown continue; 836afcb2eb5SJed Brown } 83708401ef6SPierre Jolivet PetscCheck(in[i] < Nmax, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local block index %" PetscInt_FMT " too large %" PetscInt_FMT " (max) at %" PetscInt_FMT, in[i], Nmax - 1, i); 838afcb2eb5SJed Brown out[i] = idx[in[i]]; 839afcb2eb5SJed Brown } 8403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 841afcb2eb5SJed Brown } 842d4bb536fSBarry Smith 8437e99dc12SLawrence Mitchell /*@ 844a997ad1aSLois Curfman McInnes ISGlobalToLocalMappingApply - Provides the local numbering for a list of integers 845a997ad1aSLois Curfman McInnes specified with a global numbering. 846d4bb536fSBarry Smith 84720662ed9SBarry Smith Not Collective 848b9cd556bSLois Curfman McInnes 849d4bb536fSBarry Smith Input Parameters: 850b9cd556bSLois Curfman McInnes + mapping - mapping between local and global numbering 851cab54364SBarry Smith . type - `IS_GTOLM_MASK` - maps global indices with no local value to -1 in the output list (i.e., mask them) 852cab54364SBarry Smith `IS_GTOLM_DROP` - drops the indices with no local value from the output list 853d4bb536fSBarry Smith . n - number of global indices to map 854b9cd556bSLois Curfman McInnes - idx - global indices to map 855d4bb536fSBarry Smith 856d4bb536fSBarry Smith Output Parameters: 857cab54364SBarry Smith + nout - number of indices in output array (if type == `IS_GTOLM_MASK` then nout = n) 858b9cd556bSLois Curfman McInnes - idxout - local index of each global index, one must pass in an array long enough 859cab54364SBarry Smith to hold all the indices. You can call `ISGlobalToLocalMappingApply()` with 8600298fd71SBarry Smith idxout == NULL to determine the required length (returned in nout) 861cab54364SBarry Smith and then allocate the required space and call `ISGlobalToLocalMappingApply()` 862e182c471SBarry Smith a second time to set the values. 863d4bb536fSBarry Smith 864cab54364SBarry Smith Level: advanced 865cab54364SBarry Smith 866b9cd556bSLois Curfman McInnes Notes: 86720662ed9SBarry Smith Either `nout` or `idxout` may be `NULL`. `idx` and `idxout` may be identical. 868d4bb536fSBarry Smith 86920662ed9SBarry Smith For "small" problems when using `ISGlobalToLocalMappingApply()` and `ISGlobalToLocalMappingApplyBlock()`, the `ISLocalToGlobalMappingType` of 87020662ed9SBarry Smith `ISLOCALTOGLOBALMAPPINGBASIC` will be used; 871cab54364SBarry Smith this uses more memory but is faster; this approach is not scalable for extremely large mappings. For large problems `ISLOCALTOGLOBALMAPPINGHASH` is used, this is scalable. 872cab54364SBarry Smith Use `ISLocalToGlobalMappingSetType()` or call `ISLocalToGlobalMappingSetFromOptions()` with the option -islocaltoglobalmapping_type <basic,hash> to control which is used. 8730f5bd95cSBarry Smith 87438b5cf2dSJacob Faibussowitsch Developer Notes: 87520662ed9SBarry Smith The manual page states that `idx` and `idxout` may be identical but the calling 87620662ed9SBarry Smith sequence declares `idx` as const so it cannot be the same as `idxout`. 87732fd6b96SBarry Smith 878cab54364SBarry Smith .seealso: [](sec_scatter), `ISLocalToGlobalMapping`, `ISLocalToGlobalMappingApply()`, `ISGlobalToLocalMappingApplyBlock()`, `ISLocalToGlobalMappingCreate()`, 879db781477SPatrick Sanan `ISLocalToGlobalMappingDestroy()` 880d4bb536fSBarry Smith @*/ 881d71ae5a4SJacob Faibussowitsch PetscErrorCode ISGlobalToLocalMappingApply(ISLocalToGlobalMapping mapping, ISGlobalToLocalMappingMode type, PetscInt n, const PetscInt idx[], PetscInt *nout, PetscInt idxout[]) 882d71ae5a4SJacob Faibussowitsch { 8839d90f715SBarry Smith PetscFunctionBegin; 8849d90f715SBarry Smith PetscValidHeaderSpecific(mapping, IS_LTOGM_CLASSID, 1); 88548a46eb9SPierre Jolivet if (!mapping->data) PetscCall(ISGlobalToLocalMappingSetUp(mapping)); 886dbbe0bcdSBarry Smith PetscUseTypeMethod(mapping, globaltolocalmappingapply, type, n, idx, nout, idxout); 8873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8889d90f715SBarry Smith } 8899d90f715SBarry Smith 890d4fe737eSStefano Zampini /*@ 891cab54364SBarry Smith ISGlobalToLocalMappingApplyIS - Creates from an `IS` in the global numbering 892cab54364SBarry Smith a new index set using the local numbering defined in an `ISLocalToGlobalMapping` 893d4fe737eSStefano Zampini context. 894d4fe737eSStefano Zampini 89520662ed9SBarry Smith Not Collective 896d4fe737eSStefano Zampini 897d4fe737eSStefano Zampini Input Parameters: 898d4fe737eSStefano Zampini + mapping - mapping between local and global numbering 899cab54364SBarry Smith . type - `IS_GTOLM_MASK` - maps global indices with no local value to -1 in the output list (i.e., mask them) 900cab54364SBarry Smith `IS_GTOLM_DROP` - drops the indices with no local value from the output list 901d4fe737eSStefano Zampini - is - index set in global numbering 902d4fe737eSStefano Zampini 9032fe279fdSBarry Smith Output Parameter: 904d4fe737eSStefano Zampini . newis - index set in local numbering 905d4fe737eSStefano Zampini 906d4fe737eSStefano Zampini Level: advanced 907d4fe737eSStefano Zampini 908cab54364SBarry Smith Note: 909cab54364SBarry Smith The output `IS` will be sequential, as it encodes a purely local operation 910cab54364SBarry Smith 911cab54364SBarry Smith .seealso: [](sec_scatter), `ISGlobalToLocalMapping`, `ISGlobalToLocalMappingApply()`, `ISLocalToGlobalMappingCreate()`, 912db781477SPatrick Sanan `ISLocalToGlobalMappingDestroy()` 913d4fe737eSStefano Zampini @*/ 914d71ae5a4SJacob Faibussowitsch PetscErrorCode ISGlobalToLocalMappingApplyIS(ISLocalToGlobalMapping mapping, ISGlobalToLocalMappingMode type, IS is, IS *newis) 915d71ae5a4SJacob Faibussowitsch { 916d4fe737eSStefano Zampini PetscInt n, nout, *idxout; 917d4fe737eSStefano Zampini const PetscInt *idxin; 918d4fe737eSStefano Zampini 919d4fe737eSStefano Zampini PetscFunctionBegin; 920d4fe737eSStefano Zampini PetscValidHeaderSpecific(mapping, IS_LTOGM_CLASSID, 1); 921d4fe737eSStefano Zampini PetscValidHeaderSpecific(is, IS_CLASSID, 3); 922d4fe737eSStefano Zampini PetscValidPointer(newis, 4); 923d4fe737eSStefano Zampini 9249566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(is, &n)); 9259566063dSJacob Faibussowitsch PetscCall(ISGetIndices(is, &idxin)); 926d4fe737eSStefano Zampini if (type == IS_GTOLM_MASK) { 9279566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &idxout)); 928d4fe737eSStefano Zampini } else { 9299566063dSJacob Faibussowitsch PetscCall(ISGlobalToLocalMappingApply(mapping, type, n, idxin, &nout, NULL)); 9309566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nout, &idxout)); 931d4fe737eSStefano Zampini } 9329566063dSJacob Faibussowitsch PetscCall(ISGlobalToLocalMappingApply(mapping, type, n, idxin, &nout, idxout)); 9339566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(is, &idxin)); 9349566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, nout, idxout, PETSC_OWN_POINTER, newis)); 9353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 936d4fe737eSStefano Zampini } 937d4fe737eSStefano Zampini 9389d90f715SBarry Smith /*@ 9399d90f715SBarry Smith ISGlobalToLocalMappingApplyBlock - Provides the local block numbering for a list of integers 9409d90f715SBarry Smith specified with a block global numbering. 9419d90f715SBarry Smith 94220662ed9SBarry Smith Not Collective 9439d90f715SBarry Smith 9449d90f715SBarry Smith Input Parameters: 9459d90f715SBarry Smith + mapping - mapping between local and global numbering 946cab54364SBarry Smith . type - `IS_GTOLM_MASK` - maps global indices with no local value to -1 in the output list (i.e., mask them) 947cab54364SBarry Smith `IS_GTOLM_DROP` - drops the indices with no local value from the output list 9489d90f715SBarry Smith . n - number of global indices to map 9499d90f715SBarry Smith - idx - global indices to map 9509d90f715SBarry Smith 9519d90f715SBarry Smith Output Parameters: 952cab54364SBarry Smith + nout - number of indices in output array (if type == `IS_GTOLM_MASK` then nout = n) 9539d90f715SBarry Smith - idxout - local index of each global index, one must pass in an array long enough 954cab54364SBarry Smith to hold all the indices. You can call `ISGlobalToLocalMappingApplyBlock()` with 9559d90f715SBarry Smith idxout == NULL to determine the required length (returned in nout) 956cab54364SBarry Smith and then allocate the required space and call `ISGlobalToLocalMappingApplyBlock()` 9579d90f715SBarry Smith a second time to set the values. 9589d90f715SBarry Smith 959cab54364SBarry Smith Level: advanced 960cab54364SBarry Smith 9619d90f715SBarry Smith Notes: 96220662ed9SBarry Smith Either `nout` or `idxout` may be `NULL`. `idx` and `idxout` may be identical. 9639d90f715SBarry Smith 96420662ed9SBarry Smith For "small" problems when using `ISGlobalToLocalMappingApply()` and `ISGlobalToLocalMappingApplyBlock()`, the `ISLocalToGlobalMappingType` of 96520662ed9SBarry Smith `ISLOCALTOGLOBALMAPPINGBASIC` will be used; 966cab54364SBarry Smith this uses more memory but is faster; this approach is not scalable for extremely large mappings. For large problems `ISLOCALTOGLOBALMAPPINGHASH` is used, this is scalable. 967cab54364SBarry Smith Use `ISLocalToGlobalMappingSetType()` or call `ISLocalToGlobalMappingSetFromOptions()` with the option -islocaltoglobalmapping_type <basic,hash> to control which is used. 9689d90f715SBarry Smith 96938b5cf2dSJacob Faibussowitsch Developer Notes: 97020662ed9SBarry Smith The manual page states that `idx` and `idxout` may be identical but the calling 97120662ed9SBarry Smith sequence declares `idx` as const so it cannot be the same as `idxout`. 9729d90f715SBarry Smith 973cab54364SBarry Smith .seealso: [](sec_scatter), `ISLocalToGlobalMapping`, `ISLocalToGlobalMappingApply()`, `ISGlobalToLocalMappingApply()`, `ISLocalToGlobalMappingCreate()`, 974db781477SPatrick Sanan `ISLocalToGlobalMappingDestroy()` 9759d90f715SBarry Smith @*/ 976d71ae5a4SJacob Faibussowitsch PetscErrorCode ISGlobalToLocalMappingApplyBlock(ISLocalToGlobalMapping mapping, ISGlobalToLocalMappingMode type, PetscInt n, const PetscInt idx[], PetscInt *nout, PetscInt idxout[]) 977d71ae5a4SJacob Faibussowitsch { 9783a40ed3dSBarry Smith PetscFunctionBegin; 9790700a824SBarry Smith PetscValidHeaderSpecific(mapping, IS_LTOGM_CLASSID, 1); 98048a46eb9SPierre Jolivet if (!mapping->data) PetscCall(ISGlobalToLocalMappingSetUp(mapping)); 981dbbe0bcdSBarry Smith PetscUseTypeMethod(mapping, globaltolocalmappingapplyblock, type, n, idx, nout, idxout); 9823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 983d4bb536fSBarry Smith } 98490f02eecSBarry Smith 98589d82c54SBarry Smith /*@C 9866a818285SBarry Smith ISLocalToGlobalMappingGetBlockInfo - Gets the neighbor information for each processor and 98789d82c54SBarry Smith each index shared by more than one processor 98889d82c54SBarry Smith 989c3339decSBarry Smith Collective 99089d82c54SBarry Smith 991f899ff85SJose E. Roman Input Parameter: 99289d82c54SBarry Smith . mapping - the mapping from local to global indexing 99389d82c54SBarry Smith 994d8d19677SJose E. Roman Output Parameters: 99589d82c54SBarry Smith + nproc - number of processors that are connected to this one 99638b5cf2dSJacob Faibussowitsch . procs - neighboring processors 99738b5cf2dSJacob Faibussowitsch . numprocs - number of indices for each subdomain (processor) 9983463a7baSJed Brown - indices - indices of nodes (in local numbering) shared with neighbors (sorted by global numbering) 99989d82c54SBarry Smith 100089d82c54SBarry Smith Level: advanced 100189d82c54SBarry Smith 100238b5cf2dSJacob Faibussowitsch Fortran Notes: 1003*e33f79d8SJacob Faibussowitsch There is no `ISLocalToGlobalMappingRestoreInfo()` in Fortran. You must make sure that 1004*e33f79d8SJacob Faibussowitsch `procs`[], `numprocs`[] and `indices`[][] are large enough arrays, either by allocating them 1005*e33f79d8SJacob Faibussowitsch dynamically or defining static ones large enough. 1006cab54364SBarry Smith .vb 10072cfcea29SBarry Smith PetscInt indices[nproc][numprocmax],ierr) 1008cab54364SBarry Smith ISLocalToGlobalMpngGetInfoSize(ISLocalToGlobalMapping,PetscInt nproc,PetscInt numprocmax,ierr) followed by 1009cab54364SBarry Smith ISLocalToGlobalMappingGetInfo(ISLocalToGlobalMapping,PetscInt nproc, PetscInt procs[nproc],PetscInt numprocs[nproc], 1010cab54364SBarry Smith .ve 1011cab54364SBarry Smith 1012cab54364SBarry Smith .seealso: [](sec_scatter), `ISLocalToGlobalMappingDestroy()`, `ISLocalToGlobalMappingCreateIS()`, `ISLocalToGlobalMappingCreate()`, 1013db781477SPatrick Sanan `ISLocalToGlobalMappingRestoreInfo()` 101489d82c54SBarry Smith @*/ 1015d71ae5a4SJacob Faibussowitsch PetscErrorCode ISLocalToGlobalMappingGetBlockInfo(ISLocalToGlobalMapping mapping, PetscInt *nproc, PetscInt *procs[], PetscInt *numprocs[], PetscInt **indices[]) 1016d71ae5a4SJacob Faibussowitsch { 1017268a049cSStefano Zampini PetscFunctionBegin; 1018268a049cSStefano Zampini PetscValidHeaderSpecific(mapping, IS_LTOGM_CLASSID, 1); 1019268a049cSStefano Zampini if (mapping->info_cached) { 1020268a049cSStefano Zampini *nproc = mapping->info_nproc; 1021268a049cSStefano Zampini *procs = mapping->info_procs; 1022268a049cSStefano Zampini *numprocs = mapping->info_numprocs; 1023268a049cSStefano Zampini *indices = mapping->info_indices; 1024268a049cSStefano Zampini } else { 10259566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetBlockInfo_Private(mapping, nproc, procs, numprocs, indices)); 1026268a049cSStefano Zampini } 10273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1028268a049cSStefano Zampini } 1029268a049cSStefano Zampini 1030d71ae5a4SJacob Faibussowitsch static PetscErrorCode ISLocalToGlobalMappingGetBlockInfo_Private(ISLocalToGlobalMapping mapping, PetscInt *nproc, PetscInt *procs[], PetscInt *numprocs[], PetscInt **indices[]) 1031d71ae5a4SJacob Faibussowitsch { 103297f1f81fSBarry Smith PetscMPIInt size, rank, tag1, tag2, tag3, *len, *source, imdex; 103332dcc486SBarry Smith PetscInt i, n = mapping->n, Ng, ng, max = 0, *lindices = mapping->indices; 103432dcc486SBarry Smith PetscInt *nprocs, *owner, nsends, *sends, j, *starts, nmax, nrecvs, *recvs, proc; 1035c599c493SJunchao Zhang PetscInt cnt, scale, *ownedsenders, *nownedsenders, rstart; 103632dcc486SBarry Smith PetscInt node, nownedm, nt, *sends2, nsends2, *starts2, *lens2, *dest, nrecvs2, *starts3, *recvs2, k, *bprocs, *tmp; 103732dcc486SBarry Smith PetscInt first_procs, first_numprocs, *first_indices; 103889d82c54SBarry Smith MPI_Request *recv_waits, *send_waits; 103930dcb7c9SBarry Smith MPI_Status recv_status, *send_status, *recv_statuses; 1040ce94432eSBarry Smith MPI_Comm comm; 1041ace3abfcSBarry Smith PetscBool debug = PETSC_FALSE; 104289d82c54SBarry Smith 104389d82c54SBarry Smith PetscFunctionBegin; 10449566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mapping, &comm)); 10459566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 10469566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 104724cf384cSBarry Smith if (size == 1) { 104824cf384cSBarry Smith *nproc = 0; 10490298fd71SBarry Smith *procs = NULL; 10509566063dSJacob Faibussowitsch PetscCall(PetscNew(numprocs)); 10511e2105dcSBarry Smith (*numprocs)[0] = 0; 10529566063dSJacob Faibussowitsch PetscCall(PetscNew(indices)); 10530298fd71SBarry Smith (*indices)[0] = NULL; 1054268a049cSStefano Zampini /* save info for reuse */ 1055268a049cSStefano Zampini mapping->info_nproc = *nproc; 1056268a049cSStefano Zampini mapping->info_procs = *procs; 1057268a049cSStefano Zampini mapping->info_numprocs = *numprocs; 1058268a049cSStefano Zampini mapping->info_indices = *indices; 1059268a049cSStefano Zampini mapping->info_cached = PETSC_TRUE; 10603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 106124cf384cSBarry Smith } 106224cf384cSBarry Smith 10639566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(((PetscObject)mapping)->options, NULL, "-islocaltoglobalmappinggetinfo_debug", &debug, NULL)); 106407b52d57SBarry Smith 10653677ff5aSBarry Smith /* 10666a818285SBarry Smith Notes on ISLocalToGlobalMappingGetBlockInfo 10673677ff5aSBarry Smith 10683677ff5aSBarry Smith globally owned node - the nodes that have been assigned to this processor in global 10693677ff5aSBarry Smith numbering, just for this routine. 10703677ff5aSBarry Smith 10713677ff5aSBarry Smith nontrivial globally owned node - node assigned to this processor that is on a subdomain 10723677ff5aSBarry Smith boundary (i.e. is has more than one local owner) 10733677ff5aSBarry Smith 10743677ff5aSBarry Smith locally owned node - node that exists on this processors subdomain 10753677ff5aSBarry Smith 10763677ff5aSBarry Smith nontrivial locally owned node - node that is not in the interior (i.e. has more than one 10773677ff5aSBarry Smith local subdomain 10783677ff5aSBarry Smith */ 10799566063dSJacob Faibussowitsch PetscCall(PetscObjectGetNewTag((PetscObject)mapping, &tag1)); 10809566063dSJacob Faibussowitsch PetscCall(PetscObjectGetNewTag((PetscObject)mapping, &tag2)); 10819566063dSJacob Faibussowitsch PetscCall(PetscObjectGetNewTag((PetscObject)mapping, &tag3)); 108289d82c54SBarry Smith 108389d82c54SBarry Smith for (i = 0; i < n; i++) { 108489d82c54SBarry Smith if (lindices[i] > max) max = lindices[i]; 108589d82c54SBarry Smith } 10861c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&max, &Ng, 1, MPIU_INT, MPI_MAX, comm)); 108778058e43SBarry Smith Ng++; 10889566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 10899566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 1090bc8ff85bSBarry Smith scale = Ng / size + 1; 10919371c9d4SSatish Balay ng = scale; 10929371c9d4SSatish Balay if (rank == size - 1) ng = Ng - scale * (size - 1); 10939371c9d4SSatish Balay ng = PetscMax(1, ng); 1094caba0dd0SBarry Smith rstart = scale * rank; 109589d82c54SBarry Smith 109689d82c54SBarry Smith /* determine ownership ranges of global indices */ 10979566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * size, &nprocs)); 10989566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(nprocs, 2 * size)); 109989d82c54SBarry Smith 110089d82c54SBarry Smith /* determine owners of each local node */ 11019566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &owner)); 110289d82c54SBarry Smith for (i = 0; i < n; i++) { 11033677ff5aSBarry Smith proc = lindices[i] / scale; /* processor that globally owns this index */ 110427c402fcSBarry Smith nprocs[2 * proc + 1] = 1; /* processor globally owns at least one of ours */ 11053677ff5aSBarry Smith owner[i] = proc; 110627c402fcSBarry Smith nprocs[2 * proc]++; /* count of how many that processor globally owns of ours */ 110789d82c54SBarry Smith } 11089371c9d4SSatish Balay nsends = 0; 11099371c9d4SSatish Balay for (i = 0; i < size; i++) nsends += nprocs[2 * i + 1]; 11109566063dSJacob Faibussowitsch PetscCall(PetscInfo(mapping, "Number of global owners for my local data %" PetscInt_FMT "\n", nsends)); 111189d82c54SBarry Smith 111289d82c54SBarry Smith /* inform other processors of number of messages and max length*/ 11139566063dSJacob Faibussowitsch PetscCall(PetscMaxSum(comm, nprocs, &nmax, &nrecvs)); 11149566063dSJacob Faibussowitsch PetscCall(PetscInfo(mapping, "Number of local owners for my global data %" PetscInt_FMT "\n", nrecvs)); 111589d82c54SBarry Smith 111689d82c54SBarry Smith /* post receives for owned rows */ 11179566063dSJacob Faibussowitsch PetscCall(PetscMalloc1((2 * nrecvs + 1) * (nmax + 1), &recvs)); 11189566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nrecvs + 1, &recv_waits)); 111948a46eb9SPierre Jolivet for (i = 0; i < nrecvs; i++) PetscCallMPI(MPI_Irecv(recvs + 2 * nmax * i, 2 * nmax, MPIU_INT, MPI_ANY_SOURCE, tag1, comm, recv_waits + i)); 112089d82c54SBarry Smith 112189d82c54SBarry Smith /* pack messages containing lists of local nodes to owners */ 11229566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * n + 1, &sends)); 11239566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size + 1, &starts)); 112489d82c54SBarry Smith starts[0] = 0; 1125f6e5521dSKarl Rupp for (i = 1; i < size; i++) starts[i] = starts[i - 1] + 2 * nprocs[2 * i - 2]; 112689d82c54SBarry Smith for (i = 0; i < n; i++) { 112789d82c54SBarry Smith sends[starts[owner[i]]++] = lindices[i]; 112830dcb7c9SBarry Smith sends[starts[owner[i]]++] = i; 112989d82c54SBarry Smith } 11309566063dSJacob Faibussowitsch PetscCall(PetscFree(owner)); 113189d82c54SBarry Smith starts[0] = 0; 1132f6e5521dSKarl Rupp for (i = 1; i < size; i++) starts[i] = starts[i - 1] + 2 * nprocs[2 * i - 2]; 113389d82c54SBarry Smith 113489d82c54SBarry Smith /* send the messages */ 11359566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsends + 1, &send_waits)); 11369566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsends + 1, &dest)); 113789d82c54SBarry Smith cnt = 0; 113889d82c54SBarry Smith for (i = 0; i < size; i++) { 113927c402fcSBarry Smith if (nprocs[2 * i]) { 11409566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(sends + starts[i], 2 * nprocs[2 * i], MPIU_INT, i, tag1, comm, send_waits + cnt)); 114130dcb7c9SBarry Smith dest[cnt] = i; 114289d82c54SBarry Smith cnt++; 114389d82c54SBarry Smith } 114489d82c54SBarry Smith } 11459566063dSJacob Faibussowitsch PetscCall(PetscFree(starts)); 114689d82c54SBarry Smith 114789d82c54SBarry Smith /* wait on receives */ 11489566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nrecvs + 1, &source)); 11499566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nrecvs + 1, &len)); 115089d82c54SBarry Smith cnt = nrecvs; 11519566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ng + 1, &nownedsenders)); 115289d82c54SBarry Smith while (cnt) { 11539566063dSJacob Faibussowitsch PetscCallMPI(MPI_Waitany(nrecvs, recv_waits, &imdex, &recv_status)); 115489d82c54SBarry Smith /* unpack receives into our local space */ 11559566063dSJacob Faibussowitsch PetscCallMPI(MPI_Get_count(&recv_status, MPIU_INT, &len[imdex])); 115689d82c54SBarry Smith source[imdex] = recv_status.MPI_SOURCE; 115730dcb7c9SBarry Smith len[imdex] = len[imdex] / 2; 1158caba0dd0SBarry Smith /* count how many local owners for each of my global owned indices */ 115930dcb7c9SBarry Smith for (i = 0; i < len[imdex]; i++) nownedsenders[recvs[2 * imdex * nmax + 2 * i] - rstart]++; 116089d82c54SBarry Smith cnt--; 116189d82c54SBarry Smith } 11629566063dSJacob Faibussowitsch PetscCall(PetscFree(recv_waits)); 116389d82c54SBarry Smith 116430dcb7c9SBarry Smith /* count how many globally owned indices are on an edge multiplied by how many processors own them. */ 1165bc8ff85bSBarry Smith nownedm = 0; 1166bc8ff85bSBarry Smith for (i = 0; i < ng; i++) { 1167c599c493SJunchao Zhang if (nownedsenders[i] > 1) nownedm += nownedsenders[i]; 1168bc8ff85bSBarry Smith } 1169bc8ff85bSBarry Smith 1170bc8ff85bSBarry Smith /* create single array to contain rank of all local owners of each globally owned index */ 11719566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nownedm + 1, &ownedsenders)); 11729566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ng + 1, &starts)); 1173bc8ff85bSBarry Smith starts[0] = 0; 1174bc8ff85bSBarry Smith for (i = 1; i < ng; i++) { 1175bc8ff85bSBarry Smith if (nownedsenders[i - 1] > 1) starts[i] = starts[i - 1] + nownedsenders[i - 1]; 1176bc8ff85bSBarry Smith else starts[i] = starts[i - 1]; 1177bc8ff85bSBarry Smith } 1178bc8ff85bSBarry Smith 11796aad120cSJose E. Roman /* for each nontrivial globally owned node list all arriving processors */ 1180bc8ff85bSBarry Smith for (i = 0; i < nrecvs; i++) { 1181bc8ff85bSBarry Smith for (j = 0; j < len[i]; j++) { 118230dcb7c9SBarry Smith node = recvs[2 * i * nmax + 2 * j] - rstart; 1183f6e5521dSKarl Rupp if (nownedsenders[node] > 1) ownedsenders[starts[node]++] = source[i]; 1184bc8ff85bSBarry Smith } 1185bc8ff85bSBarry Smith } 1186bc8ff85bSBarry Smith 118707b52d57SBarry Smith if (debug) { /* ----------------------------------- */ 118830dcb7c9SBarry Smith starts[0] = 0; 118930dcb7c9SBarry Smith for (i = 1; i < ng; i++) { 119030dcb7c9SBarry Smith if (nownedsenders[i - 1] > 1) starts[i] = starts[i - 1] + nownedsenders[i - 1]; 119130dcb7c9SBarry Smith else starts[i] = starts[i - 1]; 119230dcb7c9SBarry Smith } 119330dcb7c9SBarry Smith for (i = 0; i < ng; i++) { 119430dcb7c9SBarry Smith if (nownedsenders[i] > 1) { 11959566063dSJacob Faibussowitsch PetscCall(PetscSynchronizedPrintf(comm, "[%d] global node %" PetscInt_FMT " local owner processors: ", rank, i + rstart)); 119648a46eb9SPierre Jolivet for (j = 0; j < nownedsenders[i]; j++) PetscCall(PetscSynchronizedPrintf(comm, "%" PetscInt_FMT " ", ownedsenders[starts[i] + j])); 11979566063dSJacob Faibussowitsch PetscCall(PetscSynchronizedPrintf(comm, "\n")); 119830dcb7c9SBarry Smith } 119930dcb7c9SBarry Smith } 12009566063dSJacob Faibussowitsch PetscCall(PetscSynchronizedFlush(comm, PETSC_STDOUT)); 120107b52d57SBarry Smith } /* ----------------------------------- */ 120230dcb7c9SBarry Smith 12033677ff5aSBarry Smith /* wait on original sends */ 12043a96401aSBarry Smith if (nsends) { 12059566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsends, &send_status)); 12069566063dSJacob Faibussowitsch PetscCallMPI(MPI_Waitall(nsends, send_waits, send_status)); 12079566063dSJacob Faibussowitsch PetscCall(PetscFree(send_status)); 12083a96401aSBarry Smith } 12099566063dSJacob Faibussowitsch PetscCall(PetscFree(send_waits)); 12109566063dSJacob Faibussowitsch PetscCall(PetscFree(sends)); 12119566063dSJacob Faibussowitsch PetscCall(PetscFree(nprocs)); 12123677ff5aSBarry Smith 12133677ff5aSBarry Smith /* pack messages to send back to local owners */ 121430dcb7c9SBarry Smith starts[0] = 0; 121530dcb7c9SBarry Smith for (i = 1; i < ng; i++) { 121630dcb7c9SBarry Smith if (nownedsenders[i - 1] > 1) starts[i] = starts[i - 1] + nownedsenders[i - 1]; 121730dcb7c9SBarry Smith else starts[i] = starts[i - 1]; 121830dcb7c9SBarry Smith } 121930dcb7c9SBarry Smith nsends2 = nrecvs; 12209566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsends2 + 1, &nprocs)); /* length of each message */ 122130dcb7c9SBarry Smith for (i = 0; i < nrecvs; i++) { 122230dcb7c9SBarry Smith nprocs[i] = 1; 122330dcb7c9SBarry Smith for (j = 0; j < len[i]; j++) { 122430dcb7c9SBarry Smith node = recvs[2 * i * nmax + 2 * j] - rstart; 1225f6e5521dSKarl Rupp if (nownedsenders[node] > 1) nprocs[i] += 2 + nownedsenders[node]; 122630dcb7c9SBarry Smith } 122730dcb7c9SBarry Smith } 1228f6e5521dSKarl Rupp nt = 0; 1229f6e5521dSKarl Rupp for (i = 0; i < nsends2; i++) nt += nprocs[i]; 1230f6e5521dSKarl Rupp 12319566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nt + 1, &sends2)); 12329566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsends2 + 1, &starts2)); 1233f6e5521dSKarl Rupp 1234f6e5521dSKarl Rupp starts2[0] = 0; 1235f6e5521dSKarl Rupp for (i = 1; i < nsends2; i++) starts2[i] = starts2[i - 1] + nprocs[i - 1]; 123630dcb7c9SBarry Smith /* 123730dcb7c9SBarry Smith Each message is 1 + nprocs[i] long, and consists of 123830dcb7c9SBarry Smith (0) the number of nodes being sent back 123930dcb7c9SBarry Smith (1) the local node number, 124030dcb7c9SBarry Smith (2) the number of processors sharing it, 124130dcb7c9SBarry Smith (3) the processors sharing it 124230dcb7c9SBarry Smith */ 124330dcb7c9SBarry Smith for (i = 0; i < nsends2; i++) { 124430dcb7c9SBarry Smith cnt = 1; 124530dcb7c9SBarry Smith sends2[starts2[i]] = 0; 124630dcb7c9SBarry Smith for (j = 0; j < len[i]; j++) { 124730dcb7c9SBarry Smith node = recvs[2 * i * nmax + 2 * j] - rstart; 124830dcb7c9SBarry Smith if (nownedsenders[node] > 1) { 124930dcb7c9SBarry Smith sends2[starts2[i]]++; 125030dcb7c9SBarry Smith sends2[starts2[i] + cnt++] = recvs[2 * i * nmax + 2 * j + 1]; 125130dcb7c9SBarry Smith sends2[starts2[i] + cnt++] = nownedsenders[node]; 12529566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(&sends2[starts2[i] + cnt], &ownedsenders[starts[node]], nownedsenders[node])); 125330dcb7c9SBarry Smith cnt += nownedsenders[node]; 125430dcb7c9SBarry Smith } 125530dcb7c9SBarry Smith } 125630dcb7c9SBarry Smith } 125730dcb7c9SBarry Smith 125830dcb7c9SBarry Smith /* receive the message lengths */ 125930dcb7c9SBarry Smith nrecvs2 = nsends; 12609566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nrecvs2 + 1, &lens2)); 12619566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nrecvs2 + 1, &starts3)); 12629566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nrecvs2 + 1, &recv_waits)); 126348a46eb9SPierre Jolivet for (i = 0; i < nrecvs2; i++) PetscCallMPI(MPI_Irecv(&lens2[i], 1, MPIU_INT, dest[i], tag2, comm, recv_waits + i)); 1264d44834fbSBarry Smith 12658a8e0b3aSBarry Smith /* send the message lengths */ 126648a46eb9SPierre Jolivet for (i = 0; i < nsends2; i++) PetscCallMPI(MPI_Send(&nprocs[i], 1, MPIU_INT, source[i], tag2, comm)); 12678a8e0b3aSBarry Smith 1268d44834fbSBarry Smith /* wait on receives of lens */ 12690c468ba9SBarry Smith if (nrecvs2) { 12709566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nrecvs2, &recv_statuses)); 12719566063dSJacob Faibussowitsch PetscCallMPI(MPI_Waitall(nrecvs2, recv_waits, recv_statuses)); 12729566063dSJacob Faibussowitsch PetscCall(PetscFree(recv_statuses)); 12730c468ba9SBarry Smith } 12749566063dSJacob Faibussowitsch PetscCall(PetscFree(recv_waits)); 1275d44834fbSBarry Smith 127630dcb7c9SBarry Smith starts3[0] = 0; 1277d44834fbSBarry Smith nt = 0; 127830dcb7c9SBarry Smith for (i = 0; i < nrecvs2 - 1; i++) { 127930dcb7c9SBarry Smith starts3[i + 1] = starts3[i] + lens2[i]; 1280d44834fbSBarry Smith nt += lens2[i]; 128130dcb7c9SBarry Smith } 128276466f69SStefano Zampini if (nrecvs2) nt += lens2[nrecvs2 - 1]; 1283d44834fbSBarry Smith 12849566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nt + 1, &recvs2)); 12859566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nrecvs2 + 1, &recv_waits)); 128648a46eb9SPierre Jolivet for (i = 0; i < nrecvs2; i++) PetscCallMPI(MPI_Irecv(recvs2 + starts3[i], lens2[i], MPIU_INT, dest[i], tag3, comm, recv_waits + i)); 128730dcb7c9SBarry Smith 128830dcb7c9SBarry Smith /* send the messages */ 12899566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsends2 + 1, &send_waits)); 129048a46eb9SPierre Jolivet for (i = 0; i < nsends2; i++) PetscCallMPI(MPI_Isend(sends2 + starts2[i], nprocs[i], MPIU_INT, source[i], tag3, comm, send_waits + i)); 129130dcb7c9SBarry Smith 129230dcb7c9SBarry Smith /* wait on receives */ 12930c468ba9SBarry Smith if (nrecvs2) { 12949566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nrecvs2, &recv_statuses)); 12959566063dSJacob Faibussowitsch PetscCallMPI(MPI_Waitall(nrecvs2, recv_waits, recv_statuses)); 12969566063dSJacob Faibussowitsch PetscCall(PetscFree(recv_statuses)); 12970c468ba9SBarry Smith } 12989566063dSJacob Faibussowitsch PetscCall(PetscFree(recv_waits)); 12999566063dSJacob Faibussowitsch PetscCall(PetscFree(nprocs)); 130030dcb7c9SBarry Smith 130107b52d57SBarry Smith if (debug) { /* ----------------------------------- */ 130230dcb7c9SBarry Smith cnt = 0; 130330dcb7c9SBarry Smith for (i = 0; i < nrecvs2; i++) { 130430dcb7c9SBarry Smith nt = recvs2[cnt++]; 130530dcb7c9SBarry Smith for (j = 0; j < nt; j++) { 13069566063dSJacob Faibussowitsch PetscCall(PetscSynchronizedPrintf(comm, "[%d] local node %" PetscInt_FMT " number of subdomains %" PetscInt_FMT ": ", rank, recvs2[cnt], recvs2[cnt + 1])); 130748a46eb9SPierre Jolivet for (k = 0; k < recvs2[cnt + 1]; k++) PetscCall(PetscSynchronizedPrintf(comm, "%" PetscInt_FMT " ", recvs2[cnt + 2 + k])); 130830dcb7c9SBarry Smith cnt += 2 + recvs2[cnt + 1]; 13099566063dSJacob Faibussowitsch PetscCall(PetscSynchronizedPrintf(comm, "\n")); 131030dcb7c9SBarry Smith } 131130dcb7c9SBarry Smith } 13129566063dSJacob Faibussowitsch PetscCall(PetscSynchronizedFlush(comm, PETSC_STDOUT)); 131307b52d57SBarry Smith } /* ----------------------------------- */ 131430dcb7c9SBarry Smith 131530dcb7c9SBarry Smith /* count number subdomains for each local node */ 13169566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(size, &nprocs)); 131730dcb7c9SBarry Smith cnt = 0; 131830dcb7c9SBarry Smith for (i = 0; i < nrecvs2; i++) { 131930dcb7c9SBarry Smith nt = recvs2[cnt++]; 132030dcb7c9SBarry Smith for (j = 0; j < nt; j++) { 1321f6e5521dSKarl Rupp for (k = 0; k < recvs2[cnt + 1]; k++) nprocs[recvs2[cnt + 2 + k]]++; 132230dcb7c9SBarry Smith cnt += 2 + recvs2[cnt + 1]; 132330dcb7c9SBarry Smith } 132430dcb7c9SBarry Smith } 13259371c9d4SSatish Balay nt = 0; 13269371c9d4SSatish Balay for (i = 0; i < size; i++) nt += (nprocs[i] > 0); 132730dcb7c9SBarry Smith *nproc = nt; 13289566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nt + 1, procs)); 13299566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nt + 1, numprocs)); 13309566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nt + 1, indices)); 13310298fd71SBarry Smith for (i = 0; i < nt + 1; i++) (*indices)[i] = NULL; 13329566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &bprocs)); 133330dcb7c9SBarry Smith cnt = 0; 133430dcb7c9SBarry Smith for (i = 0; i < size; i++) { 133530dcb7c9SBarry Smith if (nprocs[i] > 0) { 133630dcb7c9SBarry Smith bprocs[i] = cnt; 133730dcb7c9SBarry Smith (*procs)[cnt] = i; 133830dcb7c9SBarry Smith (*numprocs)[cnt] = nprocs[i]; 13399566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nprocs[i], &(*indices)[cnt])); 134030dcb7c9SBarry Smith cnt++; 134130dcb7c9SBarry Smith } 134230dcb7c9SBarry Smith } 134330dcb7c9SBarry Smith 134430dcb7c9SBarry Smith /* make the list of subdomains for each nontrivial local node */ 13459566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(*numprocs, nt)); 134630dcb7c9SBarry Smith cnt = 0; 134730dcb7c9SBarry Smith for (i = 0; i < nrecvs2; i++) { 134830dcb7c9SBarry Smith nt = recvs2[cnt++]; 134930dcb7c9SBarry Smith for (j = 0; j < nt; j++) { 1350f6e5521dSKarl Rupp for (k = 0; k < recvs2[cnt + 1]; k++) (*indices)[bprocs[recvs2[cnt + 2 + k]]][(*numprocs)[bprocs[recvs2[cnt + 2 + k]]]++] = recvs2[cnt]; 135130dcb7c9SBarry Smith cnt += 2 + recvs2[cnt + 1]; 135230dcb7c9SBarry Smith } 135330dcb7c9SBarry Smith } 13549566063dSJacob Faibussowitsch PetscCall(PetscFree(bprocs)); 13559566063dSJacob Faibussowitsch PetscCall(PetscFree(recvs2)); 135630dcb7c9SBarry Smith 135707b52d57SBarry Smith /* sort the node indexing by their global numbers */ 135807b52d57SBarry Smith nt = *nproc; 135907b52d57SBarry Smith for (i = 0; i < nt; i++) { 13609566063dSJacob Faibussowitsch PetscCall(PetscMalloc1((*numprocs)[i], &tmp)); 1361f6e5521dSKarl Rupp for (j = 0; j < (*numprocs)[i]; j++) tmp[j] = lindices[(*indices)[i][j]]; 13629566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithArray((*numprocs)[i], tmp, (*indices)[i])); 13639566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp)); 136407b52d57SBarry Smith } 136507b52d57SBarry Smith 136607b52d57SBarry Smith if (debug) { /* ----------------------------------- */ 136730dcb7c9SBarry Smith nt = *nproc; 136830dcb7c9SBarry Smith for (i = 0; i < nt; i++) { 13699566063dSJacob Faibussowitsch PetscCall(PetscSynchronizedPrintf(comm, "[%d] subdomain %" PetscInt_FMT " number of indices %" PetscInt_FMT ": ", rank, (*procs)[i], (*numprocs)[i])); 137048a46eb9SPierre Jolivet for (j = 0; j < (*numprocs)[i]; j++) PetscCall(PetscSynchronizedPrintf(comm, "%" PetscInt_FMT " ", (*indices)[i][j])); 13719566063dSJacob Faibussowitsch PetscCall(PetscSynchronizedPrintf(comm, "\n")); 137230dcb7c9SBarry Smith } 13739566063dSJacob Faibussowitsch PetscCall(PetscSynchronizedFlush(comm, PETSC_STDOUT)); 137407b52d57SBarry Smith } /* ----------------------------------- */ 137530dcb7c9SBarry Smith 137630dcb7c9SBarry Smith /* wait on sends */ 137730dcb7c9SBarry Smith if (nsends2) { 13789566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsends2, &send_status)); 13799566063dSJacob Faibussowitsch PetscCallMPI(MPI_Waitall(nsends2, send_waits, send_status)); 13809566063dSJacob Faibussowitsch PetscCall(PetscFree(send_status)); 138130dcb7c9SBarry Smith } 138230dcb7c9SBarry Smith 13839566063dSJacob Faibussowitsch PetscCall(PetscFree(starts3)); 13849566063dSJacob Faibussowitsch PetscCall(PetscFree(dest)); 13859566063dSJacob Faibussowitsch PetscCall(PetscFree(send_waits)); 13863677ff5aSBarry Smith 13879566063dSJacob Faibussowitsch PetscCall(PetscFree(nownedsenders)); 13889566063dSJacob Faibussowitsch PetscCall(PetscFree(ownedsenders)); 13899566063dSJacob Faibussowitsch PetscCall(PetscFree(starts)); 13909566063dSJacob Faibussowitsch PetscCall(PetscFree(starts2)); 13919566063dSJacob Faibussowitsch PetscCall(PetscFree(lens2)); 139289d82c54SBarry Smith 13939566063dSJacob Faibussowitsch PetscCall(PetscFree(source)); 13949566063dSJacob Faibussowitsch PetscCall(PetscFree(len)); 13959566063dSJacob Faibussowitsch PetscCall(PetscFree(recvs)); 13969566063dSJacob Faibussowitsch PetscCall(PetscFree(nprocs)); 13979566063dSJacob Faibussowitsch PetscCall(PetscFree(sends2)); 139824cf384cSBarry Smith 139924cf384cSBarry Smith /* put the information about myself as the first entry in the list */ 140024cf384cSBarry Smith first_procs = (*procs)[0]; 140124cf384cSBarry Smith first_numprocs = (*numprocs)[0]; 140224cf384cSBarry Smith first_indices = (*indices)[0]; 140324cf384cSBarry Smith for (i = 0; i < *nproc; i++) { 140424cf384cSBarry Smith if ((*procs)[i] == rank) { 140524cf384cSBarry Smith (*procs)[0] = (*procs)[i]; 140624cf384cSBarry Smith (*numprocs)[0] = (*numprocs)[i]; 140724cf384cSBarry Smith (*indices)[0] = (*indices)[i]; 140824cf384cSBarry Smith (*procs)[i] = first_procs; 140924cf384cSBarry Smith (*numprocs)[i] = first_numprocs; 141024cf384cSBarry Smith (*indices)[i] = first_indices; 141124cf384cSBarry Smith break; 141224cf384cSBarry Smith } 141324cf384cSBarry Smith } 1414268a049cSStefano Zampini 1415268a049cSStefano Zampini /* save info for reuse */ 1416268a049cSStefano Zampini mapping->info_nproc = *nproc; 1417268a049cSStefano Zampini mapping->info_procs = *procs; 1418268a049cSStefano Zampini mapping->info_numprocs = *numprocs; 1419268a049cSStefano Zampini mapping->info_indices = *indices; 1420268a049cSStefano Zampini mapping->info_cached = PETSC_TRUE; 14213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 142289d82c54SBarry Smith } 142389d82c54SBarry Smith 14246a818285SBarry Smith /*@C 1425cab54364SBarry Smith ISLocalToGlobalMappingRestoreBlockInfo - Frees the memory allocated by `ISLocalToGlobalMappingGetBlockInfo()` 14266a818285SBarry Smith 1427c3339decSBarry Smith Collective 14286a818285SBarry Smith 1429f899ff85SJose E. Roman Input Parameter: 14306a818285SBarry Smith . mapping - the mapping from local to global indexing 14316a818285SBarry Smith 1432d8d19677SJose E. Roman Output Parameters: 14336a818285SBarry Smith + nproc - number of processors that are connected to this one 143438b5cf2dSJacob Faibussowitsch . procs - neighboring processors 143538b5cf2dSJacob Faibussowitsch . numprocs - number of indices for each processor 14366a818285SBarry Smith - indices - indices of local nodes shared with neighbor (sorted by global numbering) 14376a818285SBarry Smith 14386a818285SBarry Smith Level: advanced 14396a818285SBarry Smith 1440cab54364SBarry Smith .seealso: [](sec_scatter), `ISLocalToGlobalMappingDestroy()`, `ISLocalToGlobalMappingCreateIS()`, `ISLocalToGlobalMappingCreate()`, 1441db781477SPatrick Sanan `ISLocalToGlobalMappingGetInfo()` 14426a818285SBarry Smith @*/ 1443d71ae5a4SJacob Faibussowitsch PetscErrorCode ISLocalToGlobalMappingRestoreBlockInfo(ISLocalToGlobalMapping mapping, PetscInt *nproc, PetscInt *procs[], PetscInt *numprocs[], PetscInt **indices[]) 1444d71ae5a4SJacob Faibussowitsch { 14456a818285SBarry Smith PetscFunctionBegin; 1446cbc1caf0SMatthew G. Knepley PetscValidHeaderSpecific(mapping, IS_LTOGM_CLASSID, 1); 1447268a049cSStefano Zampini if (mapping->info_free) { 14489566063dSJacob Faibussowitsch PetscCall(PetscFree(*numprocs)); 14496a818285SBarry Smith if (*indices) { 1450268a049cSStefano Zampini PetscInt i; 1451268a049cSStefano Zampini 14529566063dSJacob Faibussowitsch PetscCall(PetscFree((*indices)[0])); 145348a46eb9SPierre Jolivet for (i = 1; i < *nproc; i++) PetscCall(PetscFree((*indices)[i])); 14549566063dSJacob Faibussowitsch PetscCall(PetscFree(*indices)); 14556a818285SBarry Smith } 1456268a049cSStefano Zampini } 1457268a049cSStefano Zampini *nproc = 0; 1458268a049cSStefano Zampini *procs = NULL; 1459268a049cSStefano Zampini *numprocs = NULL; 1460268a049cSStefano Zampini *indices = NULL; 14613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14626a818285SBarry Smith } 14636a818285SBarry Smith 14646a818285SBarry Smith /*@C 14656a818285SBarry Smith ISLocalToGlobalMappingGetInfo - Gets the neighbor information for each processor and 14666a818285SBarry Smith each index shared by more than one processor 14676a818285SBarry Smith 1468c3339decSBarry Smith Collective 14696a818285SBarry Smith 1470f899ff85SJose E. Roman Input Parameter: 14716a818285SBarry Smith . mapping - the mapping from local to global indexing 14726a818285SBarry Smith 1473d8d19677SJose E. Roman Output Parameters: 14746a818285SBarry Smith + nproc - number of processors that are connected to this one 147538b5cf2dSJacob Faibussowitsch . procs - neighboring processors 147638b5cf2dSJacob Faibussowitsch . numprocs - number of indices for each subdomain (processor) 14776a818285SBarry Smith - indices - indices of nodes (in local numbering) shared with neighbors (sorted by global numbering) 14786a818285SBarry Smith 14796a818285SBarry Smith Level: advanced 14806a818285SBarry Smith 1481cab54364SBarry Smith Note: 1482cab54364SBarry Smith The user needs to call `ISLocalToGlobalMappingRestoreInfo()` when the data is no longer needed. 14831bd0b88eSStefano Zampini 148438b5cf2dSJacob Faibussowitsch Fortran Notes: 1485*e33f79d8SJacob Faibussowitsch There is no `ISLocalToGlobalMappingRestoreInfo()` in Fortran. You must make sure that 1486*e33f79d8SJacob Faibussowitsch `procs`[], `numprocs`[] and `indices`[][] are large enough arrays, either by allocating them 1487*e33f79d8SJacob Faibussowitsch dynamically or defining static ones large enough. 1488*e33f79d8SJacob Faibussowitsch 1489cab54364SBarry Smith .vb 14906a818285SBarry Smith PetscInt indices[nproc][numprocmax],ierr) 1491cab54364SBarry Smith ISLocalToGlobalMpngGetInfoSize(ISLocalToGlobalMapping,PetscInt nproc,PetscInt numprocmax,ierr) followed by 1492cab54364SBarry Smith ISLocalToGlobalMappingGetInfo(ISLocalToGlobalMapping,PetscInt nproc, PetscInt procs[nproc],PetscInt numprocs[nproc], 1493cab54364SBarry Smith .ve 1494cab54364SBarry Smith 1495cab54364SBarry Smith .seealso: [](sec_scatter), `ISLocalToGlobalMappingDestroy()`, `ISLocalToGlobalMappingCreateIS()`, `ISLocalToGlobalMappingCreate()`, 1496db781477SPatrick Sanan `ISLocalToGlobalMappingRestoreInfo()` 14976a818285SBarry Smith @*/ 1498d71ae5a4SJacob Faibussowitsch PetscErrorCode ISLocalToGlobalMappingGetInfo(ISLocalToGlobalMapping mapping, PetscInt *nproc, PetscInt *procs[], PetscInt *numprocs[], PetscInt **indices[]) 1499d71ae5a4SJacob Faibussowitsch { 15008a1f772fSStefano Zampini PetscInt **bindices = NULL, *bnumprocs = NULL, bs, i, j, k; 15016a818285SBarry Smith 15026a818285SBarry Smith PetscFunctionBegin; 15036a818285SBarry Smith PetscValidHeaderSpecific(mapping, IS_LTOGM_CLASSID, 1); 15048a1f772fSStefano Zampini bs = mapping->bs; 15059566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetBlockInfo(mapping, nproc, procs, &bnumprocs, &bindices)); 1506268a049cSStefano Zampini if (bs > 1) { /* we need to expand the cached info */ 15079566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(*nproc, &*indices)); 15089566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(*nproc, &*numprocs)); 15096a818285SBarry Smith for (i = 0; i < *nproc; i++) { 15109566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs * bnumprocs[i], &(*indices)[i])); 1511268a049cSStefano Zampini for (j = 0; j < bnumprocs[i]; j++) { 1512ad540459SPierre Jolivet for (k = 0; k < bs; k++) (*indices)[i][j * bs + k] = bs * bindices[i][j] + k; 15136a818285SBarry Smith } 1514268a049cSStefano Zampini (*numprocs)[i] = bnumprocs[i] * bs; 15156a818285SBarry Smith } 1516268a049cSStefano Zampini mapping->info_free = PETSC_TRUE; 1517268a049cSStefano Zampini } else { 1518268a049cSStefano Zampini *numprocs = bnumprocs; 1519268a049cSStefano Zampini *indices = bindices; 15206a818285SBarry Smith } 15213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15226a818285SBarry Smith } 15236a818285SBarry Smith 152407b52d57SBarry Smith /*@C 1525cab54364SBarry Smith ISLocalToGlobalMappingRestoreInfo - Frees the memory allocated by `ISLocalToGlobalMappingGetInfo()` 152689d82c54SBarry Smith 1527c3339decSBarry Smith Collective 152807b52d57SBarry Smith 1529f899ff85SJose E. Roman Input Parameter: 153007b52d57SBarry Smith . mapping - the mapping from local to global indexing 153107b52d57SBarry Smith 1532d8d19677SJose E. Roman Output Parameters: 153307b52d57SBarry Smith + nproc - number of processors that are connected to this one 153438b5cf2dSJacob Faibussowitsch . procs - neighboring processors 153538b5cf2dSJacob Faibussowitsch . numprocs - number of indices for each processor 153607b52d57SBarry Smith - indices - indices of local nodes shared with neighbor (sorted by global numbering) 153707b52d57SBarry Smith 153807b52d57SBarry Smith Level: advanced 153907b52d57SBarry Smith 1540cab54364SBarry Smith .seealso: [](sec_scatter), `ISLocalToGlobalMappingDestroy()`, `ISLocalToGlobalMappingCreateIS()`, `ISLocalToGlobalMappingCreate()`, 1541db781477SPatrick Sanan `ISLocalToGlobalMappingGetInfo()` 154207b52d57SBarry Smith @*/ 1543d71ae5a4SJacob Faibussowitsch PetscErrorCode ISLocalToGlobalMappingRestoreInfo(ISLocalToGlobalMapping mapping, PetscInt *nproc, PetscInt *procs[], PetscInt *numprocs[], PetscInt **indices[]) 1544d71ae5a4SJacob Faibussowitsch { 154507b52d57SBarry Smith PetscFunctionBegin; 15469566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingRestoreBlockInfo(mapping, nproc, procs, numprocs, indices)); 15473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 154807b52d57SBarry Smith } 154986994e45SJed Brown 155086994e45SJed Brown /*@C 1551cab54364SBarry Smith ISLocalToGlobalMappingGetNodeInfo - Gets the neighbor information for each MPI rank 15521bd0b88eSStefano Zampini 1553c3339decSBarry Smith Collective 15541bd0b88eSStefano Zampini 1555f899ff85SJose E. Roman Input Parameter: 15561bd0b88eSStefano Zampini . mapping - the mapping from local to global indexing 15571bd0b88eSStefano Zampini 1558d8d19677SJose E. Roman Output Parameters: 1559cab54364SBarry Smith + nnodes - number of local nodes (same `ISLocalToGlobalMappingGetSize()`) 15601bd0b88eSStefano Zampini . count - number of neighboring processors per node 15611bd0b88eSStefano Zampini - indices - indices of processes sharing the node (sorted) 15621bd0b88eSStefano Zampini 15631bd0b88eSStefano Zampini Level: advanced 15641bd0b88eSStefano Zampini 1565cab54364SBarry Smith Note: 1566cab54364SBarry Smith The user needs to call `ISLocalToGlobalMappingRestoreInfo()` when the data is no longer needed. 15671bd0b88eSStefano Zampini 1568cab54364SBarry Smith .seealso: [](sec_scatter), `ISLocalToGlobalMappingDestroy()`, `ISLocalToGlobalMappingCreateIS()`, `ISLocalToGlobalMappingCreate()`, 1569db781477SPatrick Sanan `ISLocalToGlobalMappingGetInfo()`, `ISLocalToGlobalMappingRestoreNodeInfo()` 15701bd0b88eSStefano Zampini @*/ 1571d71ae5a4SJacob Faibussowitsch PetscErrorCode ISLocalToGlobalMappingGetNodeInfo(ISLocalToGlobalMapping mapping, PetscInt *nnodes, PetscInt *count[], PetscInt **indices[]) 1572d71ae5a4SJacob Faibussowitsch { 15731bd0b88eSStefano Zampini PetscInt n; 15741bd0b88eSStefano Zampini 15751bd0b88eSStefano Zampini PetscFunctionBegin; 15761bd0b88eSStefano Zampini PetscValidHeaderSpecific(mapping, IS_LTOGM_CLASSID, 1); 15779566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetSize(mapping, &n)); 15781bd0b88eSStefano Zampini if (!mapping->info_nodec) { 15791bd0b88eSStefano Zampini PetscInt i, m, n_neigh, *neigh, *n_shared, **shared; 15801bd0b88eSStefano Zampini 15819566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(n + 1, &mapping->info_nodec, n, &mapping->info_nodei)); 15829566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetInfo(mapping, &n_neigh, &neigh, &n_shared, &shared)); 1583ad540459SPierre Jolivet for (i = 0; i < n; i++) mapping->info_nodec[i] = 1; 1584071fcb05SBarry Smith m = n; 1585071fcb05SBarry Smith mapping->info_nodec[n] = 0; 15861bd0b88eSStefano Zampini for (i = 1; i < n_neigh; i++) { 15871bd0b88eSStefano Zampini PetscInt j; 15881bd0b88eSStefano Zampini 15891bd0b88eSStefano Zampini m += n_shared[i]; 15901bd0b88eSStefano Zampini for (j = 0; j < n_shared[i]; j++) mapping->info_nodec[shared[i][j]] += 1; 15911bd0b88eSStefano Zampini } 15929566063dSJacob Faibussowitsch if (n) PetscCall(PetscMalloc1(m, &mapping->info_nodei[0])); 15931bd0b88eSStefano Zampini for (i = 1; i < n; i++) mapping->info_nodei[i] = mapping->info_nodei[i - 1] + mapping->info_nodec[i - 1]; 15949566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(mapping->info_nodec, n)); 15959371c9d4SSatish Balay for (i = 0; i < n; i++) { 15969371c9d4SSatish Balay mapping->info_nodec[i] = 1; 15979371c9d4SSatish Balay mapping->info_nodei[i][0] = neigh[0]; 15989371c9d4SSatish Balay } 15991bd0b88eSStefano Zampini for (i = 1; i < n_neigh; i++) { 16001bd0b88eSStefano Zampini PetscInt j; 16011bd0b88eSStefano Zampini 16021bd0b88eSStefano Zampini for (j = 0; j < n_shared[i]; j++) { 16031bd0b88eSStefano Zampini PetscInt k = shared[i][j]; 16041bd0b88eSStefano Zampini 16051bd0b88eSStefano Zampini mapping->info_nodei[k][mapping->info_nodec[k]] = neigh[i]; 16061bd0b88eSStefano Zampini mapping->info_nodec[k] += 1; 16071bd0b88eSStefano Zampini } 16081bd0b88eSStefano Zampini } 16099566063dSJacob Faibussowitsch for (i = 0; i < n; i++) PetscCall(PetscSortRemoveDupsInt(&mapping->info_nodec[i], mapping->info_nodei[i])); 16109566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingRestoreInfo(mapping, &n_neigh, &neigh, &n_shared, &shared)); 16111bd0b88eSStefano Zampini } 16121bd0b88eSStefano Zampini if (nnodes) *nnodes = n; 16131bd0b88eSStefano Zampini if (count) *count = mapping->info_nodec; 16141bd0b88eSStefano Zampini if (indices) *indices = mapping->info_nodei; 16153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16161bd0b88eSStefano Zampini } 16171bd0b88eSStefano Zampini 16181bd0b88eSStefano Zampini /*@C 1619cab54364SBarry Smith ISLocalToGlobalMappingRestoreNodeInfo - Frees the memory allocated by `ISLocalToGlobalMappingGetNodeInfo()` 16201bd0b88eSStefano Zampini 1621c3339decSBarry Smith Collective 16221bd0b88eSStefano Zampini 1623f899ff85SJose E. Roman Input Parameter: 16241bd0b88eSStefano Zampini . mapping - the mapping from local to global indexing 16251bd0b88eSStefano Zampini 1626d8d19677SJose E. Roman Output Parameters: 16271bd0b88eSStefano Zampini + nnodes - number of local nodes 16281bd0b88eSStefano Zampini . count - number of neighboring processors per node 16291bd0b88eSStefano Zampini - indices - indices of processes sharing the node (sorted) 16301bd0b88eSStefano Zampini 16311bd0b88eSStefano Zampini Level: advanced 16321bd0b88eSStefano Zampini 1633cab54364SBarry Smith .seealso: [](sec_scatter), `ISLocalToGlobalMappingDestroy()`, `ISLocalToGlobalMappingCreateIS()`, `ISLocalToGlobalMappingCreate()`, 1634db781477SPatrick Sanan `ISLocalToGlobalMappingGetInfo()` 16351bd0b88eSStefano Zampini @*/ 1636d71ae5a4SJacob Faibussowitsch PetscErrorCode ISLocalToGlobalMappingRestoreNodeInfo(ISLocalToGlobalMapping mapping, PetscInt *nnodes, PetscInt *count[], PetscInt **indices[]) 1637d71ae5a4SJacob Faibussowitsch { 16381bd0b88eSStefano Zampini PetscFunctionBegin; 16391bd0b88eSStefano Zampini PetscValidHeaderSpecific(mapping, IS_LTOGM_CLASSID, 1); 16401bd0b88eSStefano Zampini if (nnodes) *nnodes = 0; 16411bd0b88eSStefano Zampini if (count) *count = NULL; 16421bd0b88eSStefano Zampini if (indices) *indices = NULL; 16433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16441bd0b88eSStefano Zampini } 16451bd0b88eSStefano Zampini 16466ce40d10SBarry Smith /*MC 16476ce40d10SBarry Smith ISLocalToGlobalMappingGetIndicesF90 - Get global indices for every local point that is mapped 16486ce40d10SBarry Smith 16496ce40d10SBarry Smith Synopsis: 16506ce40d10SBarry Smith ISLocalToGlobalMappingGetIndicesF90(ISLocalToGlobalMapping ltog, PetscInt, pointer :: array(:)}, integer ierr) 16516ce40d10SBarry Smith 16526ce40d10SBarry Smith Not Collective 16536ce40d10SBarry Smith 16546ce40d10SBarry Smith Input Parameter: 16556ce40d10SBarry Smith . A - the matrix 16566ce40d10SBarry Smith 16572fe279fdSBarry Smith Output Parameter: 16586ce40d10SBarry Smith . array - array of indices, the length of this array may be obtained with `ISLocalToGlobalMappingGetSize()` 16596ce40d10SBarry Smith 16606ce40d10SBarry Smith Level: advanced 16616ce40d10SBarry Smith 16626ce40d10SBarry Smith Note: 16636ce40d10SBarry Smith Use `ISLocalToGlobalMappingGetIndicesF90()` when you no longer need access to the data 16646ce40d10SBarry Smith 166520662ed9SBarry Smith .seealso: [](sec_fortranarrays), [](sec_scatter), `ISLocalToGlobalMapping`, `ISLocalToGlobalMappingGetIndices()`, `ISLocalToGlobalMappingRestoreIndices()`, 166620662ed9SBarry Smith `ISLocalToGlobalMappingRestoreIndicesF90()` 16676ce40d10SBarry Smith M*/ 16686ce40d10SBarry Smith 16696ce40d10SBarry Smith /*MC 16706ce40d10SBarry Smith ISLocalToGlobalMappingRestoreIndicesF90 - restores the global indices for every local point that is mapped obtained with `ISLocalToGlobalMappingGetIndicesF90()` 16716ce40d10SBarry Smith 16726ce40d10SBarry Smith Synopsis: 16736ce40d10SBarry Smith ISLocalToGlobalMappingRestoreIndicesF90(ISLocalToGlobalMapping ltog, PetscInt, pointer :: array(:)}, integer ierr) 16746ce40d10SBarry Smith 16756ce40d10SBarry Smith Not Collective 16766ce40d10SBarry Smith 16776ce40d10SBarry Smith Input Parameters: 16786ce40d10SBarry Smith + A - the matrix 16796ce40d10SBarry Smith - array - array of indices, the length of this array may be obtained with `ISLocalToGlobalMappingGetSize()` 16806ce40d10SBarry Smith 16816ce40d10SBarry Smith Level: advanced 16826ce40d10SBarry Smith 168320662ed9SBarry Smith .seealso: [](sec_fortranarrays), [](sec_scatter), `ISLocalToGlobalMapping`, `ISLocalToGlobalMappingGetIndices()`, `ISLocalToGlobalMappingRestoreIndices()`, 168420662ed9SBarry Smith `ISLocalToGlobalMappingGetIndicesF90()` 16856ce40d10SBarry Smith M*/ 16866ce40d10SBarry Smith 16871bd0b88eSStefano Zampini /*@C 1688107e9a97SBarry Smith ISLocalToGlobalMappingGetIndices - Get global indices for every local point that is mapped 168986994e45SJed Brown 169086994e45SJed Brown Not Collective 169186994e45SJed Brown 16924165533cSJose E. Roman Input Parameter: 169386994e45SJed Brown . ltog - local to global mapping 169486994e45SJed Brown 16954165533cSJose E. Roman Output Parameter: 1696cab54364SBarry Smith . array - array of indices, the length of this array may be obtained with `ISLocalToGlobalMappingGetSize()` 169786994e45SJed Brown 169886994e45SJed Brown Level: advanced 169986994e45SJed Brown 1700cab54364SBarry Smith Note: 1701cab54364SBarry Smith `ISLocalToGlobalMappingGetSize()` returns the length the this array 1702107e9a97SBarry Smith 170320662ed9SBarry Smith .seealso: [](sec_scatter), `ISLocalToGlobalMappingCreate()`, `ISLocalToGlobalMappingApply()`, `ISLocalToGlobalMappingRestoreIndices()`, 170420662ed9SBarry Smith `ISLocalToGlobalMappingGetBlockIndices()`, `ISLocalToGlobalMappingRestoreBlockIndices()` 170586994e45SJed Brown @*/ 1706d71ae5a4SJacob Faibussowitsch PetscErrorCode ISLocalToGlobalMappingGetIndices(ISLocalToGlobalMapping ltog, const PetscInt **array) 1707d71ae5a4SJacob Faibussowitsch { 170886994e45SJed Brown PetscFunctionBegin; 170986994e45SJed Brown PetscValidHeaderSpecific(ltog, IS_LTOGM_CLASSID, 1); 171086994e45SJed Brown PetscValidPointer(array, 2); 171145b6f7e9SBarry Smith if (ltog->bs == 1) { 171286994e45SJed Brown *array = ltog->indices; 171345b6f7e9SBarry Smith } else { 171445b6f7e9SBarry Smith PetscInt *jj, k, i, j, n = ltog->n, bs = ltog->bs; 171545b6f7e9SBarry Smith const PetscInt *ii; 171645b6f7e9SBarry Smith 17179566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs * n, &jj)); 171845b6f7e9SBarry Smith *array = jj; 171945b6f7e9SBarry Smith k = 0; 172045b6f7e9SBarry Smith ii = ltog->indices; 172145b6f7e9SBarry Smith for (i = 0; i < n; i++) 17229371c9d4SSatish Balay for (j = 0; j < bs; j++) jj[k++] = bs * ii[i] + j; 172345b6f7e9SBarry Smith } 17243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 172586994e45SJed Brown } 172686994e45SJed Brown 172786994e45SJed Brown /*@C 1728cab54364SBarry Smith ISLocalToGlobalMappingRestoreIndices - Restore indices obtained with `ISLocalToGlobalMappingGetIndices()` 172986994e45SJed Brown 173086994e45SJed Brown Not Collective 173186994e45SJed Brown 17324165533cSJose E. Roman Input Parameters: 173386994e45SJed Brown + ltog - local to global mapping 173486994e45SJed Brown - array - array of indices 173586994e45SJed Brown 173686994e45SJed Brown Level: advanced 173786994e45SJed Brown 1738cab54364SBarry Smith .seealso: [](sec_scatter), `ISLocalToGlobalMappingCreate()`, `ISLocalToGlobalMappingApply()`, `ISLocalToGlobalMappingGetIndices()` 173986994e45SJed Brown @*/ 1740d71ae5a4SJacob Faibussowitsch PetscErrorCode ISLocalToGlobalMappingRestoreIndices(ISLocalToGlobalMapping ltog, const PetscInt **array) 1741d71ae5a4SJacob Faibussowitsch { 174286994e45SJed Brown PetscFunctionBegin; 174386994e45SJed Brown PetscValidHeaderSpecific(ltog, IS_LTOGM_CLASSID, 1); 174486994e45SJed Brown PetscValidPointer(array, 2); 1745c9cc58a2SBarry Smith PetscCheck(ltog->bs != 1 || *array == ltog->indices, PETSC_COMM_SELF, PETSC_ERR_ARG_BADPTR, "Trying to return mismatched pointer"); 174645b6f7e9SBarry Smith 174748a46eb9SPierre Jolivet if (ltog->bs > 1) PetscCall(PetscFree(*(void **)array)); 17483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 174945b6f7e9SBarry Smith } 175045b6f7e9SBarry Smith 175145b6f7e9SBarry Smith /*@C 175245b6f7e9SBarry Smith ISLocalToGlobalMappingGetBlockIndices - Get global indices for every local block 175345b6f7e9SBarry Smith 175445b6f7e9SBarry Smith Not Collective 175545b6f7e9SBarry Smith 17564165533cSJose E. Roman Input Parameter: 175745b6f7e9SBarry Smith . ltog - local to global mapping 175845b6f7e9SBarry Smith 17594165533cSJose E. Roman Output Parameter: 176045b6f7e9SBarry Smith . array - array of indices 176145b6f7e9SBarry Smith 176245b6f7e9SBarry Smith Level: advanced 176345b6f7e9SBarry Smith 1764cab54364SBarry Smith .seealso: [](sec_scatter), `ISLocalToGlobalMappingCreate()`, `ISLocalToGlobalMappingApply()`, `ISLocalToGlobalMappingRestoreBlockIndices()` 176545b6f7e9SBarry Smith @*/ 1766d71ae5a4SJacob Faibussowitsch PetscErrorCode ISLocalToGlobalMappingGetBlockIndices(ISLocalToGlobalMapping ltog, const PetscInt **array) 1767d71ae5a4SJacob Faibussowitsch { 176845b6f7e9SBarry Smith PetscFunctionBegin; 176945b6f7e9SBarry Smith PetscValidHeaderSpecific(ltog, IS_LTOGM_CLASSID, 1); 177045b6f7e9SBarry Smith PetscValidPointer(array, 2); 177145b6f7e9SBarry Smith *array = ltog->indices; 17723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 177345b6f7e9SBarry Smith } 177445b6f7e9SBarry Smith 177545b6f7e9SBarry Smith /*@C 1776cab54364SBarry Smith ISLocalToGlobalMappingRestoreBlockIndices - Restore indices obtained with `ISLocalToGlobalMappingGetBlockIndices()` 177745b6f7e9SBarry Smith 177845b6f7e9SBarry Smith Not Collective 177945b6f7e9SBarry Smith 17804165533cSJose E. Roman Input Parameters: 178145b6f7e9SBarry Smith + ltog - local to global mapping 178245b6f7e9SBarry Smith - array - array of indices 178345b6f7e9SBarry Smith 178445b6f7e9SBarry Smith Level: advanced 178545b6f7e9SBarry Smith 1786cab54364SBarry Smith .seealso: [](sec_scatter), `ISLocalToGlobalMappingCreate()`, `ISLocalToGlobalMappingApply()`, `ISLocalToGlobalMappingGetIndices()` 178745b6f7e9SBarry Smith @*/ 1788d71ae5a4SJacob Faibussowitsch PetscErrorCode ISLocalToGlobalMappingRestoreBlockIndices(ISLocalToGlobalMapping ltog, const PetscInt **array) 1789d71ae5a4SJacob Faibussowitsch { 179045b6f7e9SBarry Smith PetscFunctionBegin; 179145b6f7e9SBarry Smith PetscValidHeaderSpecific(ltog, IS_LTOGM_CLASSID, 1); 179245b6f7e9SBarry Smith PetscValidPointer(array, 2); 179308401ef6SPierre Jolivet PetscCheck(*array == ltog->indices, PETSC_COMM_SELF, PETSC_ERR_ARG_BADPTR, "Trying to return mismatched pointer"); 17940298fd71SBarry Smith *array = NULL; 17953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 179686994e45SJed Brown } 1797f7efa3c7SJed Brown 1798f7efa3c7SJed Brown /*@C 1799f7efa3c7SJed Brown ISLocalToGlobalMappingConcatenate - Create a new mapping that concatenates a list of mappings 1800f7efa3c7SJed Brown 1801f7efa3c7SJed Brown Not Collective 1802f7efa3c7SJed Brown 18034165533cSJose E. Roman Input Parameters: 1804f7efa3c7SJed Brown + comm - communicator for the new mapping, must contain the communicator of every mapping to concatenate 1805f7efa3c7SJed Brown . n - number of mappings to concatenate 1806f7efa3c7SJed Brown - ltogs - local to global mappings 1807f7efa3c7SJed Brown 18084165533cSJose E. Roman Output Parameter: 1809f7efa3c7SJed Brown . ltogcat - new mapping 1810f7efa3c7SJed Brown 1811f7efa3c7SJed Brown Level: advanced 1812f7efa3c7SJed Brown 1813cab54364SBarry Smith Note: 1814cab54364SBarry Smith This currently always returns a mapping with block size of 1 1815cab54364SBarry Smith 181638b5cf2dSJacob Faibussowitsch Developer Notes: 1817cab54364SBarry Smith If all the input mapping have the same block size we could easily handle that as a special case 1818cab54364SBarry Smith 1819cab54364SBarry Smith .seealso: [](sec_scatter), `ISLocalToGlobalMapping`, `ISLocalToGlobalMappingCreate()` 1820f7efa3c7SJed Brown @*/ 1821d71ae5a4SJacob Faibussowitsch PetscErrorCode ISLocalToGlobalMappingConcatenate(MPI_Comm comm, PetscInt n, const ISLocalToGlobalMapping ltogs[], ISLocalToGlobalMapping *ltogcat) 1822d71ae5a4SJacob Faibussowitsch { 1823f7efa3c7SJed Brown PetscInt i, cnt, m, *idx; 1824f7efa3c7SJed Brown 1825f7efa3c7SJed Brown PetscFunctionBegin; 182608401ef6SPierre Jolivet PetscCheck(n >= 0, comm, PETSC_ERR_ARG_OUTOFRANGE, "Must have a non-negative number of mappings, given %" PetscInt_FMT, n); 1827f7efa3c7SJed Brown if (n > 0) PetscValidPointer(ltogs, 3); 1828f7efa3c7SJed Brown for (i = 0; i < n; i++) PetscValidHeaderSpecific(ltogs[i], IS_LTOGM_CLASSID, 3); 1829f7efa3c7SJed Brown PetscValidPointer(ltogcat, 4); 1830f7efa3c7SJed Brown for (cnt = 0, i = 0; i < n; i++) { 18319566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetSize(ltogs[i], &m)); 1832f7efa3c7SJed Brown cnt += m; 1833f7efa3c7SJed Brown } 18349566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(cnt, &idx)); 1835f7efa3c7SJed Brown for (cnt = 0, i = 0; i < n; i++) { 1836f7efa3c7SJed Brown const PetscInt *subidx; 18379566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetSize(ltogs[i], &m)); 18389566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetIndices(ltogs[i], &subidx)); 18399566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(&idx[cnt], subidx, m)); 18409566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingRestoreIndices(ltogs[i], &subidx)); 1841f7efa3c7SJed Brown cnt += m; 1842f7efa3c7SJed Brown } 18439566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreate(comm, 1, cnt, idx, PETSC_OWN_POINTER, ltogcat)); 18443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1845f7efa3c7SJed Brown } 184604a59952SBarry Smith 1847413f72f0SBarry Smith /*MC 1848cab54364SBarry Smith ISLOCALTOGLOBALMAPPINGBASIC - basic implementation of the `ISLocalToGlobalMapping` object. When `ISGlobalToLocalMappingApply()` is 1849413f72f0SBarry Smith used this is good for only small and moderate size problems. 1850413f72f0SBarry Smith 185120662ed9SBarry Smith Options Database Key: 1852a2b725a8SWilliam Gropp . -islocaltoglobalmapping_type basic - select this method 1853413f72f0SBarry Smith 1854413f72f0SBarry Smith Level: beginner 1855413f72f0SBarry Smith 1856cab54364SBarry Smith Developer Note: 1857cab54364SBarry Smith This stores all the mapping information on each MPI rank. 1858cab54364SBarry Smith 1859cab54364SBarry Smith .seealso: [](sec_scatter), `ISLocalToGlobalMappingCreate()`, `ISLocalToGlobalMappingSetType()`, `ISLOCALTOGLOBALMAPPINGHASH` 1860413f72f0SBarry Smith M*/ 1861d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode ISLocalToGlobalMappingCreate_Basic(ISLocalToGlobalMapping ltog) 1862d71ae5a4SJacob Faibussowitsch { 1863413f72f0SBarry Smith PetscFunctionBegin; 1864413f72f0SBarry Smith ltog->ops->globaltolocalmappingapply = ISGlobalToLocalMappingApply_Basic; 1865413f72f0SBarry Smith ltog->ops->globaltolocalmappingsetup = ISGlobalToLocalMappingSetUp_Basic; 1866413f72f0SBarry Smith ltog->ops->globaltolocalmappingapplyblock = ISGlobalToLocalMappingApplyBlock_Basic; 1867413f72f0SBarry Smith ltog->ops->destroy = ISLocalToGlobalMappingDestroy_Basic; 18683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1869413f72f0SBarry Smith } 1870413f72f0SBarry Smith 1871413f72f0SBarry Smith /*MC 1872cab54364SBarry Smith ISLOCALTOGLOBALMAPPINGHASH - hash implementation of the `ISLocalToGlobalMapping` object. When `ISGlobalToLocalMappingApply()` is 1873ed56e8eaSBarry Smith used this is good for large memory problems. 1874413f72f0SBarry Smith 187520662ed9SBarry Smith Options Database Key: 1876a2b725a8SWilliam Gropp . -islocaltoglobalmapping_type hash - select this method 1877413f72f0SBarry Smith 1878413f72f0SBarry Smith Level: beginner 1879413f72f0SBarry Smith 1880cab54364SBarry Smith Note: 1881cab54364SBarry Smith This is selected automatically for large problems if the user does not set the type. 1882cab54364SBarry Smith 1883cab54364SBarry Smith .seealso: [](sec_scatter), `ISLocalToGlobalMappingCreate()`, `ISLocalToGlobalMappingSetType()`, `ISLOCALTOGLOBALMAPPINGBASIC` 1884413f72f0SBarry Smith M*/ 1885d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode ISLocalToGlobalMappingCreate_Hash(ISLocalToGlobalMapping ltog) 1886d71ae5a4SJacob Faibussowitsch { 1887413f72f0SBarry Smith PetscFunctionBegin; 1888413f72f0SBarry Smith ltog->ops->globaltolocalmappingapply = ISGlobalToLocalMappingApply_Hash; 1889413f72f0SBarry Smith ltog->ops->globaltolocalmappingsetup = ISGlobalToLocalMappingSetUp_Hash; 1890413f72f0SBarry Smith ltog->ops->globaltolocalmappingapplyblock = ISGlobalToLocalMappingApplyBlock_Hash; 1891413f72f0SBarry Smith ltog->ops->destroy = ISLocalToGlobalMappingDestroy_Hash; 18923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1893413f72f0SBarry Smith } 1894413f72f0SBarry Smith 1895413f72f0SBarry Smith /*@C 1896cab54364SBarry Smith ISLocalToGlobalMappingRegister - Registers a method for applying a global to local mapping with an `ISLocalToGlobalMapping` 1897413f72f0SBarry Smith 1898413f72f0SBarry Smith Not Collective 1899413f72f0SBarry Smith 1900413f72f0SBarry Smith Input Parameters: 1901413f72f0SBarry Smith + sname - name of a new method 19022fe279fdSBarry Smith - function - routine to create method context 1903413f72f0SBarry Smith 190438b5cf2dSJacob Faibussowitsch Example Usage: 1905413f72f0SBarry Smith .vb 1906413f72f0SBarry Smith ISLocalToGlobalMappingRegister("my_mapper", MyCreate); 1907413f72f0SBarry Smith .ve 1908413f72f0SBarry Smith 1909ed56e8eaSBarry Smith Then, your mapping can be chosen with the procedural interface via 1910413f72f0SBarry Smith $ ISLocalToGlobalMappingSetType(ltog, "my_mapper") 1911413f72f0SBarry Smith or at runtime via the option 1912ed56e8eaSBarry Smith $ -islocaltoglobalmapping_type my_mapper 1913413f72f0SBarry Smith 1914413f72f0SBarry Smith Level: advanced 1915413f72f0SBarry Smith 1916cab54364SBarry Smith Note: 1917cab54364SBarry Smith `ISLocalToGlobalMappingRegister()` may be called multiple times to add several user-defined mappings. 1918413f72f0SBarry Smith 1919cab54364SBarry Smith .seealso: [](sec_scatter), `ISLocalToGlobalMappingRegisterAll()`, `ISLocalToGlobalMappingRegisterDestroy()`, `ISLOCALTOGLOBALMAPPINGBASIC`, 1920cab54364SBarry Smith `ISLOCALTOGLOBALMAPPINGHASH`, `ISLocalToGlobalMapping`, `ISLocalToGlobalMappingApply()` 1921413f72f0SBarry Smith @*/ 1922d71ae5a4SJacob Faibussowitsch PetscErrorCode ISLocalToGlobalMappingRegister(const char sname[], PetscErrorCode (*function)(ISLocalToGlobalMapping)) 1923d71ae5a4SJacob Faibussowitsch { 1924413f72f0SBarry Smith PetscFunctionBegin; 19259566063dSJacob Faibussowitsch PetscCall(ISInitializePackage()); 19269566063dSJacob Faibussowitsch PetscCall(PetscFunctionListAdd(&ISLocalToGlobalMappingList, sname, function)); 19273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1928413f72f0SBarry Smith } 1929413f72f0SBarry Smith 1930413f72f0SBarry Smith /*@C 1931cab54364SBarry Smith ISLocalToGlobalMappingSetType - Sets the implementation type `ISLocalToGlobalMapping` will use 1932413f72f0SBarry Smith 1933c3339decSBarry Smith Logically Collective 1934413f72f0SBarry Smith 1935413f72f0SBarry Smith Input Parameters: 1936cab54364SBarry Smith + ltog - the `ISLocalToGlobalMapping` object 1937413f72f0SBarry Smith - type - a known method 1938413f72f0SBarry Smith 1939413f72f0SBarry Smith Options Database Key: 1940cab54364SBarry Smith . -islocaltoglobalmapping_type <method> - Sets the method; use -help for a list of available methods (for instance, basic or hash) 1941cab54364SBarry Smith 1942cab54364SBarry Smith Level: intermediate 1943413f72f0SBarry Smith 1944413f72f0SBarry Smith Notes: 194520662ed9SBarry Smith See `ISLocalToGlobalMappingType` for available methods 1946413f72f0SBarry Smith 1947cab54364SBarry Smith Normally, it is best to use the `ISLocalToGlobalMappingSetFromOptions()` command and 1948cab54364SBarry Smith then set the `ISLocalToGlobalMappingType` from the options database rather than by using 1949413f72f0SBarry Smith this routine. 1950413f72f0SBarry Smith 195138b5cf2dSJacob Faibussowitsch Developer Notes: 1952cab54364SBarry Smith `ISLocalToGlobalMappingRegister()` is used to add new types to `ISLocalToGlobalMappingList` from which they 1953cab54364SBarry Smith are accessed by `ISLocalToGlobalMappingSetType()`. 1954413f72f0SBarry Smith 195538b5cf2dSJacob Faibussowitsch .seealso: [](sec_scatter), `ISLocalToGlobalMappingType`, `ISLocalToGlobalMappingRegister()`, `ISLocalToGlobalMappingCreate()`, `ISLocalToGlobalMappingGetType()` 1956413f72f0SBarry Smith @*/ 1957d71ae5a4SJacob Faibussowitsch PetscErrorCode ISLocalToGlobalMappingSetType(ISLocalToGlobalMapping ltog, ISLocalToGlobalMappingType type) 1958d71ae5a4SJacob Faibussowitsch { 1959413f72f0SBarry Smith PetscBool match; 19605f80ce2aSJacob Faibussowitsch PetscErrorCode (*r)(ISLocalToGlobalMapping) = NULL; 1961413f72f0SBarry Smith 1962413f72f0SBarry Smith PetscFunctionBegin; 1963413f72f0SBarry Smith PetscValidHeaderSpecific(ltog, IS_LTOGM_CLASSID, 1); 1964a0d79125SStefano Zampini if (type) PetscValidCharPointer(type, 2); 1965413f72f0SBarry Smith 19669566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)ltog, type, &match)); 19673ba16761SJacob Faibussowitsch if (match) PetscFunctionReturn(PETSC_SUCCESS); 1968413f72f0SBarry Smith 1969a0d79125SStefano Zampini /* L2G maps defer type setup at globaltolocal calls, allow passing NULL here */ 1970a0d79125SStefano Zampini if (type) { 19719566063dSJacob Faibussowitsch PetscCall(PetscFunctionListFind(ISLocalToGlobalMappingList, type, &r)); 1972a0d79125SStefano Zampini PetscCheck(r, PetscObjectComm((PetscObject)ltog), PETSC_ERR_ARG_UNKNOWN_TYPE, "Unable to find requested ISLocalToGlobalMapping type %s", type); 1973a0d79125SStefano Zampini } 1974413f72f0SBarry Smith /* Destroy the previous private LTOG context */ 1975dbbe0bcdSBarry Smith PetscTryTypeMethod(ltog, destroy); 1976413f72f0SBarry Smith ltog->ops->destroy = NULL; 1977dbbe0bcdSBarry Smith 19789566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)ltog, type)); 19799566063dSJacob Faibussowitsch if (r) PetscCall((*r)(ltog)); 19803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1981a0d79125SStefano Zampini } 1982a0d79125SStefano Zampini 1983a0d79125SStefano Zampini /*@C 1984cab54364SBarry Smith ISLocalToGlobalMappingGetType - Get the type of the `ISLocalToGlobalMapping` 1985a0d79125SStefano Zampini 1986a0d79125SStefano Zampini Not Collective 1987a0d79125SStefano Zampini 1988a0d79125SStefano Zampini Input Parameter: 1989cab54364SBarry Smith . ltog - the `ISLocalToGlobalMapping` object 1990a0d79125SStefano Zampini 1991a0d79125SStefano Zampini Output Parameter: 1992a0d79125SStefano Zampini . type - the type 1993a0d79125SStefano Zampini 199449762cbcSSatish Balay Level: intermediate 199549762cbcSSatish Balay 199638b5cf2dSJacob Faibussowitsch .seealso: [](sec_scatter), `ISLocalToGlobalMappingType`, `ISLocalToGlobalMappingRegister()`, `ISLocalToGlobalMappingCreate()`, `ISLocalToGlobalMappingSetType()` 1997a0d79125SStefano Zampini @*/ 1998d71ae5a4SJacob Faibussowitsch PetscErrorCode ISLocalToGlobalMappingGetType(ISLocalToGlobalMapping ltog, ISLocalToGlobalMappingType *type) 1999d71ae5a4SJacob Faibussowitsch { 2000a0d79125SStefano Zampini PetscFunctionBegin; 2001a0d79125SStefano Zampini PetscValidHeaderSpecific(ltog, IS_LTOGM_CLASSID, 1); 2002a0d79125SStefano Zampini PetscValidPointer(type, 2); 2003a0d79125SStefano Zampini *type = ((PetscObject)ltog)->type_name; 20043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2005413f72f0SBarry Smith } 2006413f72f0SBarry Smith 2007413f72f0SBarry Smith PetscBool ISLocalToGlobalMappingRegisterAllCalled = PETSC_FALSE; 2008413f72f0SBarry Smith 2009413f72f0SBarry Smith /*@C 2010cab54364SBarry Smith ISLocalToGlobalMappingRegisterAll - Registers all of the local to global mapping components in the `IS` package. 2011413f72f0SBarry Smith 2012413f72f0SBarry Smith Not Collective 2013413f72f0SBarry Smith 2014413f72f0SBarry Smith Level: advanced 2015413f72f0SBarry Smith 2016cab54364SBarry Smith .seealso: [](sec_scatter), `ISRegister()`, `ISLocalToGlobalRegister()` 2017413f72f0SBarry Smith @*/ 2018d71ae5a4SJacob Faibussowitsch PetscErrorCode ISLocalToGlobalMappingRegisterAll(void) 2019d71ae5a4SJacob Faibussowitsch { 2020413f72f0SBarry Smith PetscFunctionBegin; 20213ba16761SJacob Faibussowitsch if (ISLocalToGlobalMappingRegisterAllCalled) PetscFunctionReturn(PETSC_SUCCESS); 2022413f72f0SBarry Smith ISLocalToGlobalMappingRegisterAllCalled = PETSC_TRUE; 20239566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingRegister(ISLOCALTOGLOBALMAPPINGBASIC, ISLocalToGlobalMappingCreate_Basic)); 20249566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingRegister(ISLOCALTOGLOBALMAPPINGHASH, ISLocalToGlobalMappingCreate_Hash)); 20253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2026413f72f0SBarry Smith } 2027