12362add9SBarry Smith 2b45d2f2cSJed Brown #include <petsc-private/isimpl.h> /*I "petscis.h" I*/ 32362add9SBarry Smith 47087cfbeSBarry Smith PetscClassId IS_LTOGM_CLASSID; 58e58c17dSMatthew Knepley 64a2ae208SSatish Balay #undef __FUNCT__ 74a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingGetSize" 83b9aefa3SBarry Smith /*@C 93b9aefa3SBarry Smith ISLocalToGlobalMappingGetSize - Gets the local size of a local to global mapping. 103b9aefa3SBarry Smith 113b9aefa3SBarry Smith Not Collective 123b9aefa3SBarry Smith 133b9aefa3SBarry Smith Input Parameter: 143b9aefa3SBarry Smith . ltog - local to global mapping 153b9aefa3SBarry Smith 163b9aefa3SBarry Smith Output Parameter: 173b9aefa3SBarry Smith . n - the number of entries in the local mapping 183b9aefa3SBarry Smith 193b9aefa3SBarry Smith Level: advanced 203b9aefa3SBarry Smith 21273d9f13SBarry Smith Concepts: mapping^local to global 223b9aefa3SBarry Smith 233b9aefa3SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate() 243b9aefa3SBarry Smith @*/ 257087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingGetSize(ISLocalToGlobalMapping mapping,PetscInt *n) 263b9aefa3SBarry Smith { 273b9aefa3SBarry Smith PetscFunctionBegin; 280700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 294482741eSBarry Smith PetscValidIntPointer(n,2); 303b9aefa3SBarry Smith *n = mapping->n; 313b9aefa3SBarry Smith PetscFunctionReturn(0); 323b9aefa3SBarry Smith } 333b9aefa3SBarry Smith 344a2ae208SSatish Balay #undef __FUNCT__ 354a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingView" 365a5d4f66SBarry Smith /*@C 375a5d4f66SBarry Smith ISLocalToGlobalMappingView - View a local to global mapping 385a5d4f66SBarry Smith 39b9cd556bSLois Curfman McInnes Not Collective 40b9cd556bSLois Curfman McInnes 415a5d4f66SBarry Smith Input Parameters: 423b9aefa3SBarry Smith + ltog - local to global mapping 433b9aefa3SBarry Smith - viewer - viewer 445a5d4f66SBarry Smith 45a997ad1aSLois Curfman McInnes Level: advanced 46a997ad1aSLois Curfman McInnes 47273d9f13SBarry Smith Concepts: mapping^local to global 485a5d4f66SBarry Smith 495a5d4f66SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate() 505a5d4f66SBarry Smith @*/ 517087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingView(ISLocalToGlobalMapping mapping,PetscViewer viewer) 525a5d4f66SBarry Smith { 5332dcc486SBarry Smith PetscInt i; 5432dcc486SBarry Smith PetscMPIInt rank; 55ace3abfcSBarry Smith PetscBool iascii; 566849ba73SBarry Smith PetscErrorCode ierr; 575a5d4f66SBarry Smith 585a5d4f66SBarry Smith PetscFunctionBegin; 590700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 603050cee2SBarry Smith if (!viewer) { 617adad957SLisandro Dalcin ierr = PetscViewerASCIIGetStdout(((PetscObject)mapping)->comm,&viewer);CHKERRQ(ierr); 623050cee2SBarry Smith } 630700a824SBarry Smith PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2); 645a5d4f66SBarry Smith 657adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)mapping)->comm,&rank);CHKERRQ(ierr); 66251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 6732077d6dSBarry Smith if (iascii) { 687b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr); 695a5d4f66SBarry Smith for (i=0; i<mapping->n; i++) { 70b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] %d %d\n",rank,i,mapping->indices[i]);CHKERRQ(ierr); 716831982aSBarry Smith } 72b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 737b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr); 747b23a99aSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Viewer type %s not supported for ISLocalToGlobalMapping",((PetscObject)viewer)->type_name); 755a5d4f66SBarry Smith PetscFunctionReturn(0); 765a5d4f66SBarry Smith } 775a5d4f66SBarry Smith 784a2ae208SSatish Balay #undef __FUNCT__ 794a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingCreateIS" 801f428162SBarry Smith /*@ 812bdab257SBarry Smith ISLocalToGlobalMappingCreateIS - Creates a mapping between a local (0 to n) 822bdab257SBarry Smith ordering and a global parallel ordering. 832bdab257SBarry Smith 840f5bd95cSBarry Smith Not collective 85b9cd556bSLois Curfman McInnes 86a997ad1aSLois Curfman McInnes Input Parameter: 878c03b21aSDmitry Karpeev . is - index set containing the global numbers for each local number 882bdab257SBarry Smith 89a997ad1aSLois Curfman McInnes Output Parameter: 902bdab257SBarry Smith . mapping - new mapping data structure 912bdab257SBarry Smith 92a997ad1aSLois Curfman McInnes Level: advanced 93a997ad1aSLois Curfman McInnes 94273d9f13SBarry Smith Concepts: mapping^local to global 952bdab257SBarry Smith 962bdab257SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate() 972bdab257SBarry Smith @*/ 987087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingCreateIS(IS is,ISLocalToGlobalMapping *mapping) 992bdab257SBarry Smith { 1006849ba73SBarry Smith PetscErrorCode ierr; 1015d0c19d7SBarry Smith PetscInt n; 1025d0c19d7SBarry Smith const PetscInt *indices; 1032bdab257SBarry Smith MPI_Comm comm; 1043a40ed3dSBarry Smith 1053a40ed3dSBarry Smith PetscFunctionBegin; 1060700a824SBarry Smith PetscValidHeaderSpecific(is,IS_CLASSID,1); 1074482741eSBarry Smith PetscValidPointer(mapping,2); 1082bdab257SBarry Smith 1092bdab257SBarry Smith ierr = PetscObjectGetComm((PetscObject)is,&comm);CHKERRQ(ierr); 1103b9aefa3SBarry Smith ierr = ISGetLocalSize(is,&n);CHKERRQ(ierr); 1112bdab257SBarry Smith ierr = ISGetIndices(is,&indices);CHKERRQ(ierr); 112d5ad8652SBarry Smith ierr = ISLocalToGlobalMappingCreate(comm,n,indices,PETSC_COPY_VALUES,mapping);CHKERRQ(ierr); 1132bdab257SBarry Smith ierr = ISRestoreIndices(is,&indices);CHKERRQ(ierr); 1143a40ed3dSBarry Smith PetscFunctionReturn(0); 1152bdab257SBarry Smith } 1165a5d4f66SBarry Smith 117a4d96a55SJed Brown #undef __FUNCT__ 118a4d96a55SJed Brown #define __FUNCT__ "ISLocalToGlobalMappingCreateSF" 119a4d96a55SJed Brown /*@C 120a4d96a55SJed Brown ISLocalToGlobalMappingCreateSF - Creates a mapping between a local (0 to n) 121a4d96a55SJed Brown ordering and a global parallel ordering. 122a4d96a55SJed Brown 123a4d96a55SJed Brown Collective 124a4d96a55SJed Brown 125a4d96a55SJed Brown Input Parameter: 126a4d96a55SJed Brown + sf - star forest mapping contiguous local indices to (rank, offset) 127a4d96a55SJed Brown - start - first global index on this process 128a4d96a55SJed Brown 129a4d96a55SJed Brown Output Parameter: 130a4d96a55SJed Brown . mapping - new mapping data structure 131a4d96a55SJed Brown 132a4d96a55SJed Brown Level: advanced 133a4d96a55SJed Brown 134a4d96a55SJed Brown Concepts: mapping^local to global 135a4d96a55SJed Brown 136a4d96a55SJed Brown .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingCreateIS() 137a4d96a55SJed Brown @*/ 138a4d96a55SJed Brown PetscErrorCode ISLocalToGlobalMappingCreateSF(PetscSF sf,PetscInt start,ISLocalToGlobalMapping *mapping) 139a4d96a55SJed Brown { 140a4d96a55SJed Brown PetscErrorCode ierr; 141a4d96a55SJed Brown PetscInt i,maxlocal,nroots,nleaves,*globals,*ltog; 142a4d96a55SJed Brown const PetscInt *ilocal; 143a4d96a55SJed Brown MPI_Comm comm; 144a4d96a55SJed Brown 145a4d96a55SJed Brown PetscFunctionBegin; 146a4d96a55SJed Brown PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 147a4d96a55SJed Brown PetscValidPointer(mapping,3); 148a4d96a55SJed Brown 149a4d96a55SJed Brown ierr = PetscObjectGetComm((PetscObject)sf,&comm);CHKERRQ(ierr); 150a4d96a55SJed Brown ierr = PetscSFGetGraph(sf,&nroots,&nleaves,&ilocal,PETSC_NULL);CHKERRQ(ierr); 151*f6e5521dSKarl Rupp if (ilocal) { 152*f6e5521dSKarl Rupp for (i=0,maxlocal=0; i<nleaves; i++) maxlocal = PetscMax(maxlocal,ilocal[i]+1); 153*f6e5521dSKarl Rupp } 154a4d96a55SJed Brown else maxlocal = nleaves; 155a4d96a55SJed Brown ierr = PetscMalloc(nroots*sizeof(PetscInt),&globals);CHKERRQ(ierr); 156a4d96a55SJed Brown ierr = PetscMalloc(maxlocal*sizeof(PetscInt),<og);CHKERRQ(ierr); 157a4d96a55SJed Brown for (i=0; i<nroots; i++) globals[i] = start + i; 158a4d96a55SJed Brown for (i=0; i<maxlocal; i++) ltog[i] = -1; 159a4d96a55SJed Brown ierr = PetscSFBcastBegin(sf,MPIU_INT,globals,ltog);CHKERRQ(ierr); 160a4d96a55SJed Brown ierr = PetscSFBcastEnd(sf,MPIU_INT,globals,ltog);CHKERRQ(ierr); 161a4d96a55SJed Brown ierr = ISLocalToGlobalMappingCreate(comm,maxlocal,ltog,PETSC_OWN_POINTER,mapping);CHKERRQ(ierr); 162a4d96a55SJed Brown ierr = PetscFree(globals);CHKERRQ(ierr); 163a4d96a55SJed Brown PetscFunctionReturn(0); 164a4d96a55SJed Brown } 165b46b645bSBarry Smith 1664a2ae208SSatish Balay #undef __FUNCT__ 1674a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingCreate" 168ba5bb76aSSatish Balay /*@ 16990f02eecSBarry Smith ISLocalToGlobalMappingCreate - Creates a mapping between a local (0 to n) 17090f02eecSBarry Smith ordering and a global parallel ordering. 1712362add9SBarry Smith 17289d82c54SBarry Smith Not Collective, but communicator may have more than one process 173b9cd556bSLois Curfman McInnes 1742362add9SBarry Smith Input Parameters: 17589d82c54SBarry Smith + comm - MPI communicator 17690f02eecSBarry Smith . n - the number of local elements 1779669e4d8SBarry Smith . indices - the global index for each local element, these do not need to be in increasing order (sorted) 178d5ad8652SBarry Smith - mode - see PetscCopyMode 1792362add9SBarry Smith 180a997ad1aSLois Curfman McInnes Output Parameter: 18190f02eecSBarry Smith . mapping - new mapping data structure 1822362add9SBarry Smith 183a997ad1aSLois Curfman McInnes Level: advanced 184a997ad1aSLois Curfman McInnes 185273d9f13SBarry Smith Concepts: mapping^local to global 1862362add9SBarry Smith 187d5ad8652SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS() 1882362add9SBarry Smith @*/ 1897087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingCreate(MPI_Comm cm,PetscInt n,const PetscInt indices[],PetscCopyMode mode,ISLocalToGlobalMapping *mapping) 1902362add9SBarry Smith { 1916849ba73SBarry Smith PetscErrorCode ierr; 19232dcc486SBarry Smith PetscInt *in; 193b46b645bSBarry Smith 194b46b645bSBarry Smith PetscFunctionBegin; 19573911063SBarry Smith if (n) PetscValidIntPointer(indices,3); 1964482741eSBarry Smith PetscValidPointer(mapping,4); 197b46b645bSBarry Smith 1988e58c17dSMatthew Knepley *mapping = PETSC_NULL; 199519f805aSKarl Rupp #if !defined(PETSC_USE_DYNAMIC_LIBRARIES) 2002b6de112SBarry Smith ierr = ISInitializePackage(PETSC_NULL);CHKERRQ(ierr); 2018e58c17dSMatthew Knepley #endif 2022362add9SBarry Smith 2033194b578SJed Brown ierr = PetscHeaderCreate(*mapping,_p_ISLocalToGlobalMapping,int,IS_LTOGM_CLASSID,0,"ISLocalToGlobalMapping","Local to global mapping","IS", 20452e6d16bSBarry Smith cm,ISLocalToGlobalMappingDestroy,ISLocalToGlobalMappingView);CHKERRQ(ierr); 205d4bb536fSBarry Smith (*mapping)->n = n; 206d4bb536fSBarry Smith /* 207d4bb536fSBarry Smith Do not create the global to local mapping. This is only created if 208d4bb536fSBarry Smith ISGlobalToLocalMapping() is called 209d4bb536fSBarry Smith */ 210d4bb536fSBarry Smith (*mapping)->globals = 0; 211d5ad8652SBarry Smith if (mode == PETSC_COPY_VALUES) { 212d5ad8652SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&in);CHKERRQ(ierr); 213d5ad8652SBarry Smith ierr = PetscMemcpy(in,indices,n*sizeof(PetscInt));CHKERRQ(ierr); 214d5ad8652SBarry Smith ierr = PetscLogObjectMemory(*mapping,n*sizeof(PetscInt));CHKERRQ(ierr); 215d5ad8652SBarry Smith (*mapping)->indices = in; 216*f6e5521dSKarl Rupp } else if (mode == PETSC_OWN_POINTER) (*mapping)->indices = (PetscInt*)indices; 217*f6e5521dSKarl Rupp else SETERRQ(cm,PETSC_ERR_SUP,"Cannot currently use PETSC_USE_POINTER"); 2183a40ed3dSBarry Smith PetscFunctionReturn(0); 2192362add9SBarry Smith } 2202362add9SBarry Smith 2214a2ae208SSatish Balay #undef __FUNCT__ 2224a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingBlock" 223bce096a4SSatish Balay /*@ 224323b833fSBarry Smith ISLocalToGlobalMappingBlock - Creates a blocked index version of an 225323b833fSBarry Smith ISLocalToGlobalMapping that is appropriate for MatSetLocalToGlobalMappingBlock() 226323b833fSBarry Smith and VecSetLocalToGlobalMappingBlock(). 227323b833fSBarry Smith 228323b833fSBarry Smith Not Collective, but communicator may have more than one process 229323b833fSBarry Smith 230323b833fSBarry Smith Input Parameters: 231323b833fSBarry Smith + inmap - original point-wise mapping 232323b833fSBarry Smith - bs - block size 233323b833fSBarry Smith 234323b833fSBarry Smith Output Parameter: 23569eb54c3SBarry Smith . outmap - block based mapping; the indices are relative to BLOCKS, not individual vector or matrix entries. 236323b833fSBarry Smith 237323b833fSBarry Smith Level: advanced 238323b833fSBarry Smith 239323b833fSBarry Smith Concepts: mapping^local to global 240323b833fSBarry Smith 241323b833fSBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingCreateIS() 242323b833fSBarry Smith @*/ 2437087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingBlock(ISLocalToGlobalMapping inmap,PetscInt bs,ISLocalToGlobalMapping *outmap) 244323b833fSBarry Smith { 2456849ba73SBarry Smith PetscErrorCode ierr; 24632dcc486SBarry Smith PetscInt *ii,i,n; 247323b833fSBarry Smith 248323b833fSBarry Smith PetscFunctionBegin; 2490700a824SBarry Smith PetscValidHeaderSpecific(inmap,IS_LTOGM_CLASSID,1); 250b2beed0aSJed Brown PetscValidPointer(outmap,3); 251323b833fSBarry Smith if (bs > 1) { 252323b833fSBarry Smith n = inmap->n/bs; 253e32f2f54SBarry Smith if (n*bs != inmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Pointwise mapping length is not divisible by block size"); 25432dcc486SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&ii);CHKERRQ(ierr); 255*f6e5521dSKarl Rupp for (i=0; i<n; i++) ii[i] = inmap->indices[bs*i]/bs; 256d5ad8652SBarry Smith ierr = ISLocalToGlobalMappingCreate(((PetscObject)inmap)->comm,n,ii,PETSC_OWN_POINTER,outmap);CHKERRQ(ierr); 257323b833fSBarry Smith } else { 258323b833fSBarry Smith ierr = PetscObjectReference((PetscObject)inmap);CHKERRQ(ierr); 259c3122656SLisandro Dalcin *outmap = inmap; 260323b833fSBarry Smith } 261323b833fSBarry Smith PetscFunctionReturn(0); 262323b833fSBarry Smith } 263323b833fSBarry Smith 2644a2ae208SSatish Balay #undef __FUNCT__ 2658ab951edSJed Brown #define __FUNCT__ "ISLocalToGlobalMappingUnBlock" 266b2beed0aSJed Brown /*@ 267b2beed0aSJed Brown ISLocalToGlobalMappingUnBlock - Creates a scalar index version of a blocked 268b2beed0aSJed Brown ISLocalToGlobalMapping 269b2beed0aSJed Brown 270b2beed0aSJed Brown Not Collective, but communicator may have more than one process 271b2beed0aSJed Brown 272b2beed0aSJed Brown Input Parameter: 273b2beed0aSJed Brown + inmap - block based mapping; the indices are relative to BLOCKS, not individual vector or matrix entries. 274b2beed0aSJed Brown - bs - block size 275b2beed0aSJed Brown 276b2beed0aSJed Brown Output Parameter: 277b2beed0aSJed Brown . outmap - pointwise mapping 278b2beed0aSJed Brown 279b2beed0aSJed Brown Level: advanced 280b2beed0aSJed Brown 281b2beed0aSJed Brown Concepts: mapping^local to global 282b2beed0aSJed Brown 283b2beed0aSJed Brown .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingBlock() 284b2beed0aSJed Brown @*/ 2857087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingUnBlock(ISLocalToGlobalMapping inmap,PetscInt bs,ISLocalToGlobalMapping *outmap) 286b2beed0aSJed Brown { 287b2beed0aSJed Brown PetscErrorCode ierr; 288b2beed0aSJed Brown PetscInt *ii,i,n; 289b2beed0aSJed Brown 290b2beed0aSJed Brown PetscFunctionBegin; 291b2beed0aSJed Brown PetscValidHeaderSpecific(inmap,IS_LTOGM_CLASSID,1); 292b2beed0aSJed Brown PetscValidPointer(outmap,2); 293b2beed0aSJed Brown if (bs > 1) { 294b2beed0aSJed Brown n = inmap->n*bs; 295b2beed0aSJed Brown ierr = PetscMalloc(n*sizeof(PetscInt),&ii);CHKERRQ(ierr); 296*f6e5521dSKarl Rupp for (i=0; i<n; i++) ii[i] = inmap->indices[i/bs]*bs + (i%bs); 297b2beed0aSJed Brown ierr = ISLocalToGlobalMappingCreate(((PetscObject)inmap)->comm,n,ii,PETSC_OWN_POINTER,outmap);CHKERRQ(ierr); 298b2beed0aSJed Brown } else { 299b2beed0aSJed Brown ierr = PetscObjectReference((PetscObject)inmap);CHKERRQ(ierr); 300b2beed0aSJed Brown *outmap = inmap; 301b2beed0aSJed Brown } 302b2beed0aSJed Brown PetscFunctionReturn(0); 303b2beed0aSJed Brown } 304b2beed0aSJed Brown 305b2beed0aSJed Brown #undef __FUNCT__ 3064a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingDestroy" 30790f02eecSBarry Smith /*@ 30890f02eecSBarry Smith ISLocalToGlobalMappingDestroy - Destroys a mapping between a local (0 to n) 30990f02eecSBarry Smith ordering and a global parallel ordering. 31090f02eecSBarry Smith 3110f5bd95cSBarry Smith Note Collective 312b9cd556bSLois Curfman McInnes 31390f02eecSBarry Smith Input Parameters: 31490f02eecSBarry Smith . mapping - mapping data structure 31590f02eecSBarry Smith 316a997ad1aSLois Curfman McInnes Level: advanced 317a997ad1aSLois Curfman McInnes 3183acfe500SLois Curfman McInnes .seealso: ISLocalToGlobalMappingCreate() 31990f02eecSBarry Smith @*/ 3206bf464f9SBarry Smith PetscErrorCode ISLocalToGlobalMappingDestroy(ISLocalToGlobalMapping *mapping) 32190f02eecSBarry Smith { 322dfbe8321SBarry Smith PetscErrorCode ierr; 3235fd66863SKarl Rupp 3243a40ed3dSBarry Smith PetscFunctionBegin; 3256bf464f9SBarry Smith if (!*mapping) PetscFunctionReturn(0); 3266bf464f9SBarry Smith PetscValidHeaderSpecific((*mapping),IS_LTOGM_CLASSID,1); 327997056adSBarry Smith if (--((PetscObject)(*mapping))->refct > 0) {*mapping = 0;PetscFunctionReturn(0);} 3286bf464f9SBarry Smith ierr = PetscFree((*mapping)->indices);CHKERRQ(ierr); 3296bf464f9SBarry Smith ierr = PetscFree((*mapping)->globals);CHKERRQ(ierr); 330d38fa0fbSBarry Smith ierr = PetscHeaderDestroy(mapping);CHKERRQ(ierr); 331992144d0SBarry Smith *mapping = 0; 3323a40ed3dSBarry Smith PetscFunctionReturn(0); 33390f02eecSBarry Smith } 33490f02eecSBarry Smith 3354a2ae208SSatish Balay #undef __FUNCT__ 3364a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingApplyIS" 33790f02eecSBarry Smith /*@ 3383acfe500SLois Curfman McInnes ISLocalToGlobalMappingApplyIS - Creates from an IS in the local numbering 3393acfe500SLois Curfman McInnes a new index set using the global numbering defined in an ISLocalToGlobalMapping 3403acfe500SLois Curfman McInnes context. 34190f02eecSBarry Smith 342b9cd556bSLois Curfman McInnes Not collective 343b9cd556bSLois Curfman McInnes 34490f02eecSBarry Smith Input Parameters: 345b9cd556bSLois Curfman McInnes + mapping - mapping between local and global numbering 346b9cd556bSLois Curfman McInnes - is - index set in local numbering 34790f02eecSBarry Smith 34890f02eecSBarry Smith Output Parameters: 34990f02eecSBarry Smith . newis - index set in global numbering 35090f02eecSBarry Smith 351a997ad1aSLois Curfman McInnes Level: advanced 352a997ad1aSLois Curfman McInnes 353273d9f13SBarry Smith Concepts: mapping^local to global 3543acfe500SLois Curfman McInnes 35590f02eecSBarry Smith .seealso: ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingCreate(), 356d4bb536fSBarry Smith ISLocalToGlobalMappingDestroy(), ISGlobalToLocalMappingApply() 35790f02eecSBarry Smith @*/ 3587087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingApplyIS(ISLocalToGlobalMapping mapping,IS is,IS *newis) 35990f02eecSBarry Smith { 3606849ba73SBarry Smith PetscErrorCode ierr; 3615d0c19d7SBarry Smith PetscInt n,i,*idxmap,*idxout,Nmax = mapping->n; 3625d0c19d7SBarry Smith const PetscInt *idxin; 3633a40ed3dSBarry Smith 3643a40ed3dSBarry Smith PetscFunctionBegin; 3650700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 3660700a824SBarry Smith PetscValidHeaderSpecific(is,IS_CLASSID,2); 3674482741eSBarry Smith PetscValidPointer(newis,3); 36890f02eecSBarry Smith 3693b9aefa3SBarry Smith ierr = ISGetLocalSize(is,&n);CHKERRQ(ierr); 37090f02eecSBarry Smith ierr = ISGetIndices(is,&idxin);CHKERRQ(ierr); 37190f02eecSBarry Smith idxmap = mapping->indices; 37290f02eecSBarry Smith 3737c334f02SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&idxout);CHKERRQ(ierr); 37490f02eecSBarry Smith for (i=0; i<n; i++) { 375e32f2f54SBarry Smith if (idxin[i] >= Nmax) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local index %d too large %d (max) at %d",idxin[i],Nmax-1,i); 37690f02eecSBarry Smith idxout[i] = idxmap[idxin[i]]; 37790f02eecSBarry Smith } 3783b9aefa3SBarry Smith ierr = ISRestoreIndices(is,&idxin);CHKERRQ(ierr); 37970b3c8c7SBarry Smith ierr = ISCreateGeneral(PETSC_COMM_SELF,n,idxout,PETSC_OWN_POINTER,newis);CHKERRQ(ierr); 3803a40ed3dSBarry Smith PetscFunctionReturn(0); 38190f02eecSBarry Smith } 38290f02eecSBarry Smith 38389d82c54SBarry Smith /*MC 3843acfe500SLois Curfman McInnes ISLocalToGlobalMappingApply - Takes a list of integers in a local numbering 3853acfe500SLois Curfman McInnes and converts them to the global numbering. 38690f02eecSBarry Smith 387eca87e8dSBarry Smith Synopsis: 388f2ba6396SBarry Smith #include "petscis.h" 389eca87e8dSBarry Smith PetscErrorCode ISLocalToGlobalMappingApply(ISLocalToGlobalMapping mapping,int N,int in[],int out[]) 390eca87e8dSBarry Smith 391b9cd556bSLois Curfman McInnes Not collective 392b9cd556bSLois Curfman McInnes 393bb25748dSBarry Smith Input Parameters: 394b9cd556bSLois Curfman McInnes + mapping - the local to global mapping context 395bb25748dSBarry Smith . N - number of integers 396b9cd556bSLois Curfman McInnes - in - input indices in local numbering 397bb25748dSBarry Smith 398bb25748dSBarry Smith Output Parameter: 399bb25748dSBarry Smith . out - indices in global numbering 400bb25748dSBarry Smith 401b9cd556bSLois Curfman McInnes Notes: 402b9cd556bSLois Curfman McInnes The in and out array parameters may be identical. 403d4bb536fSBarry Smith 404a997ad1aSLois Curfman McInnes Level: advanced 405a997ad1aSLois Curfman McInnes 406bb25748dSBarry Smith .seealso: ISLocalToGlobalMappingCreate(),ISLocalToGlobalMappingDestroy(), 4070752156aSBarry Smith ISLocalToGlobalMappingApplyIS(),AOCreateBasic(),AOApplicationToPetsc(), 408d4bb536fSBarry Smith AOPetscToApplication(), ISGlobalToLocalMappingApply() 409bb25748dSBarry Smith 410273d9f13SBarry Smith Concepts: mapping^local to global 411d4bb536fSBarry Smith 41289d82c54SBarry Smith M*/ 413d4bb536fSBarry Smith 414d4bb536fSBarry Smith /* -----------------------------------------------------------------------------------------*/ 415d4bb536fSBarry Smith 4164a2ae208SSatish Balay #undef __FUNCT__ 4174a2ae208SSatish Balay #define __FUNCT__ "ISGlobalToLocalMappingSetUp_Private" 418d4bb536fSBarry Smith /* 419d4bb536fSBarry Smith Creates the global fields in the ISLocalToGlobalMapping structure 420d4bb536fSBarry Smith */ 4216849ba73SBarry Smith static PetscErrorCode ISGlobalToLocalMappingSetUp_Private(ISLocalToGlobalMapping mapping) 422d4bb536fSBarry Smith { 4236849ba73SBarry Smith PetscErrorCode ierr; 42432dcc486SBarry Smith PetscInt i,*idx = mapping->indices,n = mapping->n,end,start,*globals; 425d4bb536fSBarry Smith 4263a40ed3dSBarry Smith PetscFunctionBegin; 427d4bb536fSBarry Smith end = 0; 428ec268f7cSJed Brown start = PETSC_MAX_INT; 429d4bb536fSBarry Smith 430d4bb536fSBarry Smith for (i=0; i<n; i++) { 431d4bb536fSBarry Smith if (idx[i] < 0) continue; 432d4bb536fSBarry Smith if (idx[i] < start) start = idx[i]; 433d4bb536fSBarry Smith if (idx[i] > end) end = idx[i]; 434d4bb536fSBarry Smith } 435d4bb536fSBarry Smith if (start > end) {start = 0; end = -1;} 436d4bb536fSBarry Smith mapping->globalstart = start; 437d4bb536fSBarry Smith mapping->globalend = end; 438d4bb536fSBarry Smith 43932dcc486SBarry Smith ierr = PetscMalloc((end-start+2)*sizeof(PetscInt),&globals);CHKERRQ(ierr); 440b0a32e0cSBarry Smith mapping->globals = globals; 441*f6e5521dSKarl Rupp for (i=0; i<end-start+1; i++) globals[i] = -1; 442d4bb536fSBarry Smith for (i=0; i<n; i++) { 443d4bb536fSBarry Smith if (idx[i] < 0) continue; 444d4bb536fSBarry Smith globals[idx[i] - start] = i; 445d4bb536fSBarry Smith } 446d4bb536fSBarry Smith 44752e6d16bSBarry Smith ierr = PetscLogObjectMemory(mapping,(end-start+1)*sizeof(PetscInt));CHKERRQ(ierr); 4483a40ed3dSBarry Smith PetscFunctionReturn(0); 449d4bb536fSBarry Smith } 450d4bb536fSBarry Smith 4514a2ae208SSatish Balay #undef __FUNCT__ 4524a2ae208SSatish Balay #define __FUNCT__ "ISGlobalToLocalMappingApply" 453d4bb536fSBarry Smith /*@ 454a997ad1aSLois Curfman McInnes ISGlobalToLocalMappingApply - Provides the local numbering for a list of integers 455a997ad1aSLois Curfman McInnes specified with a global numbering. 456d4bb536fSBarry Smith 457b9cd556bSLois Curfman McInnes Not collective 458b9cd556bSLois Curfman McInnes 459d4bb536fSBarry Smith Input Parameters: 460b9cd556bSLois Curfman McInnes + mapping - mapping between local and global numbering 461d4bb536fSBarry Smith . type - IS_GTOLM_MASK - replaces global indices with no local value with -1 462d4bb536fSBarry Smith IS_GTOLM_DROP - drops the indices with no local value from the output list 463d4bb536fSBarry Smith . n - number of global indices to map 464b9cd556bSLois Curfman McInnes - idx - global indices to map 465d4bb536fSBarry Smith 466d4bb536fSBarry Smith Output Parameters: 467b9cd556bSLois Curfman McInnes + nout - number of indices in output array (if type == IS_GTOLM_MASK then nout = n) 468b9cd556bSLois Curfman McInnes - idxout - local index of each global index, one must pass in an array long enough 469e182c471SBarry Smith to hold all the indices. You can call ISGlobalToLocalMappingApply() with 470e182c471SBarry Smith idxout == PETSC_NULL to determine the required length (returned in nout) 471e182c471SBarry Smith and then allocate the required space and call ISGlobalToLocalMappingApply() 472e182c471SBarry Smith a second time to set the values. 473d4bb536fSBarry Smith 474b9cd556bSLois Curfman McInnes Notes: 475b9cd556bSLois Curfman McInnes Either nout or idxout may be PETSC_NULL. idx and idxout may be identical. 476d4bb536fSBarry Smith 4770f5bd95cSBarry Smith This is not scalable in memory usage. Each processor requires O(Nglobal) size 4780f5bd95cSBarry Smith array to compute these. 4790f5bd95cSBarry Smith 480a997ad1aSLois Curfman McInnes Level: advanced 481a997ad1aSLois Curfman McInnes 48232fd6b96SBarry Smith Developer Note: The manual page states that idx and idxout may be identical but the calling 48332fd6b96SBarry Smith sequence declares idx as const so it cannot be the same as idxout. 48432fd6b96SBarry Smith 485273d9f13SBarry Smith Concepts: mapping^global to local 486d4bb536fSBarry Smith 487d4bb536fSBarry Smith .seealso: ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingCreate(), 488d4bb536fSBarry Smith ISLocalToGlobalMappingDestroy() 489d4bb536fSBarry Smith @*/ 4907087cfbeSBarry Smith PetscErrorCode ISGlobalToLocalMappingApply(ISLocalToGlobalMapping mapping,ISGlobalToLocalMappingType type, 49132dcc486SBarry Smith PetscInt n,const PetscInt idx[],PetscInt *nout,PetscInt idxout[]) 492d4bb536fSBarry Smith { 49332dcc486SBarry Smith PetscInt i,*globals,nf = 0,tmp,start,end; 4946849ba73SBarry Smith PetscErrorCode ierr; 495d4bb536fSBarry Smith 4963a40ed3dSBarry Smith PetscFunctionBegin; 4970700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 498d4bb536fSBarry Smith if (!mapping->globals) { 499d4bb536fSBarry Smith ierr = ISGlobalToLocalMappingSetUp_Private(mapping);CHKERRQ(ierr); 500d4bb536fSBarry Smith } 501d4bb536fSBarry Smith globals = mapping->globals; 502d4bb536fSBarry Smith start = mapping->globalstart; 503d4bb536fSBarry Smith end = mapping->globalend; 504d4bb536fSBarry Smith 505d4bb536fSBarry Smith if (type == IS_GTOLM_MASK) { 506d4bb536fSBarry Smith if (idxout) { 507d4bb536fSBarry Smith for (i=0; i<n; i++) { 508d4bb536fSBarry Smith if (idx[i] < 0) idxout[i] = idx[i]; 509d4bb536fSBarry Smith else if (idx[i] < start) idxout[i] = -1; 510d4bb536fSBarry Smith else if (idx[i] > end) idxout[i] = -1; 511d4bb536fSBarry Smith else idxout[i] = globals[idx[i] - start]; 512d4bb536fSBarry Smith } 513d4bb536fSBarry Smith } 514d4bb536fSBarry Smith if (nout) *nout = n; 515d4bb536fSBarry Smith } else { 516d4bb536fSBarry Smith if (idxout) { 517d4bb536fSBarry Smith for (i=0; i<n; i++) { 518d4bb536fSBarry Smith if (idx[i] < 0) continue; 519d4bb536fSBarry Smith if (idx[i] < start) continue; 520d4bb536fSBarry Smith if (idx[i] > end) continue; 521d4bb536fSBarry Smith tmp = globals[idx[i] - start]; 522d4bb536fSBarry Smith if (tmp < 0) continue; 523d4bb536fSBarry Smith idxout[nf++] = tmp; 524d4bb536fSBarry Smith } 525d4bb536fSBarry Smith } else { 526d4bb536fSBarry Smith for (i=0; i<n; i++) { 527d4bb536fSBarry Smith if (idx[i] < 0) continue; 528d4bb536fSBarry Smith if (idx[i] < start) continue; 529d4bb536fSBarry Smith if (idx[i] > end) continue; 530d4bb536fSBarry Smith tmp = globals[idx[i] - start]; 531d4bb536fSBarry Smith if (tmp < 0) continue; 532d4bb536fSBarry Smith nf++; 533d4bb536fSBarry Smith } 534d4bb536fSBarry Smith } 535d4bb536fSBarry Smith if (nout) *nout = nf; 536d4bb536fSBarry Smith } 5373a40ed3dSBarry Smith PetscFunctionReturn(0); 538d4bb536fSBarry Smith } 53990f02eecSBarry Smith 5404a2ae208SSatish Balay #undef __FUNCT__ 5414a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingGetInfo" 54289d82c54SBarry Smith /*@C 54389d82c54SBarry Smith ISLocalToGlobalMappingGetInfo - Gets the neighbor information for each processor and 54489d82c54SBarry Smith each index shared by more than one processor 54589d82c54SBarry Smith 54689d82c54SBarry Smith Collective on ISLocalToGlobalMapping 54789d82c54SBarry Smith 54889d82c54SBarry Smith Input Parameters: 54989d82c54SBarry Smith . mapping - the mapping from local to global indexing 55089d82c54SBarry Smith 55189d82c54SBarry Smith Output Parameter: 55289d82c54SBarry Smith + nproc - number of processors that are connected to this one 55389d82c54SBarry Smith . proc - neighboring processors 55407b52d57SBarry Smith . numproc - number of indices for each subdomain (processor) 5553463a7baSJed Brown - indices - indices of nodes (in local numbering) shared with neighbors (sorted by global numbering) 55689d82c54SBarry Smith 55789d82c54SBarry Smith Level: advanced 55889d82c54SBarry Smith 559273d9f13SBarry Smith Concepts: mapping^local to global 56089d82c54SBarry Smith 5612cfcea29SBarry Smith Fortran Usage: 5622cfcea29SBarry Smith $ ISLocalToGlobalMpngGetInfoSize(ISLocalToGlobalMapping,PetscInt nproc,PetscInt numprocmax,ierr) followed by 5632cfcea29SBarry Smith $ ISLocalToGlobalMappingGetInfo(ISLocalToGlobalMapping,PetscInt nproc, PetscInt procs[nproc],PetscInt numprocs[nproc], 5642cfcea29SBarry Smith PetscInt indices[nproc][numprocmax],ierr) 5652cfcea29SBarry Smith There is no ISLocalToGlobalMappingRestoreInfo() in Fortran. You must make sure that procs[], numprocs[] and 5662cfcea29SBarry Smith indices[][] are large enough arrays, either by allocating them dynamically or defining static ones large enough. 5672cfcea29SBarry Smith 5682cfcea29SBarry Smith 56907b52d57SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS(), ISLocalToGlobalMappingCreate(), 57007b52d57SBarry Smith ISLocalToGlobalMappingRestoreInfo() 57189d82c54SBarry Smith @*/ 5727087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingGetInfo(ISLocalToGlobalMapping mapping,PetscInt *nproc,PetscInt *procs[],PetscInt *numprocs[],PetscInt **indices[]) 57389d82c54SBarry Smith { 5746849ba73SBarry Smith PetscErrorCode ierr; 57597f1f81fSBarry Smith PetscMPIInt size,rank,tag1,tag2,tag3,*len,*source,imdex; 57632dcc486SBarry Smith PetscInt i,n = mapping->n,Ng,ng,max = 0,*lindices = mapping->indices; 57732dcc486SBarry Smith PetscInt *nprocs,*owner,nsends,*sends,j,*starts,nmax,nrecvs,*recvs,proc; 57897f1f81fSBarry Smith PetscInt cnt,scale,*ownedsenders,*nownedsenders,rstart,nowned; 57932dcc486SBarry Smith PetscInt node,nownedm,nt,*sends2,nsends2,*starts2,*lens2,*dest,nrecvs2,*starts3,*recvs2,k,*bprocs,*tmp; 58032dcc486SBarry Smith PetscInt first_procs,first_numprocs,*first_indices; 58189d82c54SBarry Smith MPI_Request *recv_waits,*send_waits; 58230dcb7c9SBarry Smith MPI_Status recv_status,*send_status,*recv_statuses; 5837adad957SLisandro Dalcin MPI_Comm comm = ((PetscObject)mapping)->comm; 584ace3abfcSBarry Smith PetscBool debug = PETSC_FALSE; 58589d82c54SBarry Smith 58689d82c54SBarry Smith PetscFunctionBegin; 5870700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 58824cf384cSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 58924cf384cSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 59024cf384cSBarry Smith if (size == 1) { 59124cf384cSBarry Smith *nproc = 0; 59224cf384cSBarry Smith *procs = PETSC_NULL; 59332dcc486SBarry Smith ierr = PetscMalloc(sizeof(PetscInt),numprocs);CHKERRQ(ierr); 5941e2105dcSBarry Smith (*numprocs)[0] = 0; 59532dcc486SBarry Smith ierr = PetscMalloc(sizeof(PetscInt*),indices);CHKERRQ(ierr); 5961e2105dcSBarry Smith (*indices)[0] = PETSC_NULL; 59724cf384cSBarry Smith PetscFunctionReturn(0); 59824cf384cSBarry Smith } 59924cf384cSBarry Smith 600acfcf0e5SJed Brown ierr = PetscOptionsGetBool(PETSC_NULL,"-islocaltoglobalmappinggetinfo_debug",&debug,PETSC_NULL);CHKERRQ(ierr); 60107b52d57SBarry Smith 6023677ff5aSBarry Smith /* 6033677ff5aSBarry Smith Notes on ISLocalToGlobalMappingGetInfo 6043677ff5aSBarry Smith 6053677ff5aSBarry Smith globally owned node - the nodes that have been assigned to this processor in global 6063677ff5aSBarry Smith numbering, just for this routine. 6073677ff5aSBarry Smith 6083677ff5aSBarry Smith nontrivial globally owned node - node assigned to this processor that is on a subdomain 6093677ff5aSBarry Smith boundary (i.e. is has more than one local owner) 6103677ff5aSBarry Smith 6113677ff5aSBarry Smith locally owned node - node that exists on this processors subdomain 6123677ff5aSBarry Smith 6133677ff5aSBarry Smith nontrivial locally owned node - node that is not in the interior (i.e. has more than one 6143677ff5aSBarry Smith local subdomain 6153677ff5aSBarry Smith */ 61624cf384cSBarry Smith ierr = PetscObjectGetNewTag((PetscObject)mapping,&tag1);CHKERRQ(ierr); 61724cf384cSBarry Smith ierr = PetscObjectGetNewTag((PetscObject)mapping,&tag2);CHKERRQ(ierr); 61824cf384cSBarry Smith ierr = PetscObjectGetNewTag((PetscObject)mapping,&tag3);CHKERRQ(ierr); 61989d82c54SBarry Smith 62089d82c54SBarry Smith for (i=0; i<n; i++) { 62189d82c54SBarry Smith if (lindices[i] > max) max = lindices[i]; 62289d82c54SBarry Smith } 62332dcc486SBarry Smith ierr = MPI_Allreduce(&max,&Ng,1,MPIU_INT,MPI_MAX,comm);CHKERRQ(ierr); 62478058e43SBarry Smith Ng++; 62589d82c54SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 62689d82c54SBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 627bc8ff85bSBarry Smith scale = Ng/size + 1; 628a2e34c3dSBarry Smith ng = scale; if (rank == size-1) ng = Ng - scale*(size-1); ng = PetscMax(1,ng); 629caba0dd0SBarry Smith rstart = scale*rank; 63089d82c54SBarry Smith 63189d82c54SBarry Smith /* determine ownership ranges of global indices */ 6327c334f02SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); 63332dcc486SBarry Smith ierr = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr); 63489d82c54SBarry Smith 63589d82c54SBarry Smith /* determine owners of each local node */ 6367c334f02SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&owner);CHKERRQ(ierr); 63789d82c54SBarry Smith for (i=0; i<n; i++) { 6383677ff5aSBarry Smith proc = lindices[i]/scale; /* processor that globally owns this index */ 63927c402fcSBarry Smith nprocs[2*proc+1] = 1; /* processor globally owns at least one of ours */ 6403677ff5aSBarry Smith owner[i] = proc; 64127c402fcSBarry Smith nprocs[2*proc]++; /* count of how many that processor globally owns of ours */ 64289d82c54SBarry Smith } 64327c402fcSBarry Smith nsends = 0; for (i=0; i<size; i++) nsends += nprocs[2*i+1]; 6441e2582c4SBarry Smith ierr = PetscInfo1(mapping,"Number of global owners for my local data %d\n",nsends);CHKERRQ(ierr); 64589d82c54SBarry Smith 64689d82c54SBarry Smith /* inform other processors of number of messages and max length*/ 64727c402fcSBarry Smith ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr); 6481e2582c4SBarry Smith ierr = PetscInfo1(mapping,"Number of local owners for my global data %d\n",nrecvs);CHKERRQ(ierr); 64989d82c54SBarry Smith 65089d82c54SBarry Smith /* post receives for owned rows */ 65132dcc486SBarry Smith ierr = PetscMalloc((2*nrecvs+1)*(nmax+1)*sizeof(PetscInt),&recvs);CHKERRQ(ierr); 652b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 65389d82c54SBarry Smith for (i=0; i<nrecvs; i++) { 65432dcc486SBarry Smith ierr = MPI_Irecv(recvs+2*nmax*i,2*nmax,MPIU_INT,MPI_ANY_SOURCE,tag1,comm,recv_waits+i);CHKERRQ(ierr); 65589d82c54SBarry Smith } 65689d82c54SBarry Smith 65789d82c54SBarry Smith /* pack messages containing lists of local nodes to owners */ 65832dcc486SBarry Smith ierr = PetscMalloc((2*n+1)*sizeof(PetscInt),&sends);CHKERRQ(ierr); 65932dcc486SBarry Smith ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr); 66089d82c54SBarry Smith starts[0] = 0; 661*f6e5521dSKarl Rupp for (i=1; i<size; i++) starts[i] = starts[i-1] + 2*nprocs[2*i-2]; 66289d82c54SBarry Smith for (i=0; i<n; i++) { 66389d82c54SBarry Smith sends[starts[owner[i]]++] = lindices[i]; 66430dcb7c9SBarry Smith sends[starts[owner[i]]++] = i; 66589d82c54SBarry Smith } 66689d82c54SBarry Smith ierr = PetscFree(owner);CHKERRQ(ierr); 66789d82c54SBarry Smith starts[0] = 0; 668*f6e5521dSKarl Rupp for (i=1; i<size; i++) starts[i] = starts[i-1] + 2*nprocs[2*i-2]; 66989d82c54SBarry Smith 67089d82c54SBarry Smith /* send the messages */ 671b0a32e0cSBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 67232dcc486SBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(PetscInt),&dest);CHKERRQ(ierr); 67389d82c54SBarry Smith cnt = 0; 67489d82c54SBarry Smith for (i=0; i<size; i++) { 67527c402fcSBarry Smith if (nprocs[2*i]) { 67632dcc486SBarry Smith ierr = MPI_Isend(sends+starts[i],2*nprocs[2*i],MPIU_INT,i,tag1,comm,send_waits+cnt);CHKERRQ(ierr); 67730dcb7c9SBarry Smith dest[cnt] = i; 67889d82c54SBarry Smith cnt++; 67989d82c54SBarry Smith } 68089d82c54SBarry Smith } 68189d82c54SBarry Smith ierr = PetscFree(starts);CHKERRQ(ierr); 68289d82c54SBarry Smith 68389d82c54SBarry Smith /* wait on receives */ 68497f1f81fSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(PetscMPIInt),&source);CHKERRQ(ierr); 68597f1f81fSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(PetscMPIInt),&len);CHKERRQ(ierr); 68689d82c54SBarry Smith cnt = nrecvs; 68732dcc486SBarry Smith ierr = PetscMalloc((ng+1)*sizeof(PetscInt),&nownedsenders);CHKERRQ(ierr); 68832dcc486SBarry Smith ierr = PetscMemzero(nownedsenders,ng*sizeof(PetscInt));CHKERRQ(ierr); 68989d82c54SBarry Smith while (cnt) { 69089d82c54SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 69189d82c54SBarry Smith /* unpack receives into our local space */ 69232dcc486SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&len[imdex]);CHKERRQ(ierr); 69389d82c54SBarry Smith source[imdex] = recv_status.MPI_SOURCE; 69430dcb7c9SBarry Smith len[imdex] = len[imdex]/2; 695caba0dd0SBarry Smith /* count how many local owners for each of my global owned indices */ 69630dcb7c9SBarry Smith for (i=0; i<len[imdex]; i++) nownedsenders[recvs[2*imdex*nmax+2*i]-rstart]++; 69789d82c54SBarry Smith cnt--; 69889d82c54SBarry Smith } 69989d82c54SBarry Smith ierr = PetscFree(recv_waits);CHKERRQ(ierr); 70089d82c54SBarry Smith 70130dcb7c9SBarry Smith /* count how many globally owned indices are on an edge multiplied by how many processors own them. */ 702bc8ff85bSBarry Smith nowned = 0; 703bc8ff85bSBarry Smith nownedm = 0; 704bc8ff85bSBarry Smith for (i=0; i<ng; i++) { 705bc8ff85bSBarry Smith if (nownedsenders[i] > 1) {nownedm += nownedsenders[i]; nowned++;} 706bc8ff85bSBarry Smith } 707bc8ff85bSBarry Smith 708bc8ff85bSBarry Smith /* create single array to contain rank of all local owners of each globally owned index */ 70932dcc486SBarry Smith ierr = PetscMalloc((nownedm+1)*sizeof(PetscInt),&ownedsenders);CHKERRQ(ierr); 71032dcc486SBarry Smith ierr = PetscMalloc((ng+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr); 711bc8ff85bSBarry Smith starts[0] = 0; 712bc8ff85bSBarry Smith for (i=1; i<ng; i++) { 713bc8ff85bSBarry Smith if (nownedsenders[i-1] > 1) starts[i] = starts[i-1] + nownedsenders[i-1]; 714bc8ff85bSBarry Smith else starts[i] = starts[i-1]; 715bc8ff85bSBarry Smith } 716bc8ff85bSBarry Smith 71730dcb7c9SBarry Smith /* for each nontrival globally owned node list all arriving processors */ 718bc8ff85bSBarry Smith for (i=0; i<nrecvs; i++) { 719bc8ff85bSBarry Smith for (j=0; j<len[i]; j++) { 72030dcb7c9SBarry Smith node = recvs[2*i*nmax+2*j]-rstart; 721*f6e5521dSKarl Rupp if (nownedsenders[node] > 1) ownedsenders[starts[node]++] = source[i]; 722bc8ff85bSBarry Smith } 723bc8ff85bSBarry Smith } 724bc8ff85bSBarry Smith 72507b52d57SBarry Smith if (debug) { /* ----------------------------------- */ 72630dcb7c9SBarry Smith starts[0] = 0; 72730dcb7c9SBarry Smith for (i=1; i<ng; i++) { 72830dcb7c9SBarry Smith if (nownedsenders[i-1] > 1) starts[i] = starts[i-1] + nownedsenders[i-1]; 72930dcb7c9SBarry Smith else starts[i] = starts[i-1]; 73030dcb7c9SBarry Smith } 73130dcb7c9SBarry Smith for (i=0; i<ng; i++) { 73230dcb7c9SBarry Smith if (nownedsenders[i] > 1) { 73330dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"[%d] global node %d local owner processors: ",rank,i+rstart);CHKERRQ(ierr); 73430dcb7c9SBarry Smith for (j=0; j<nownedsenders[i]; j++) { 73530dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"%d ",ownedsenders[starts[i]+j]);CHKERRQ(ierr); 73630dcb7c9SBarry Smith } 73730dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"\n");CHKERRQ(ierr); 73830dcb7c9SBarry Smith } 73930dcb7c9SBarry Smith } 74030dcb7c9SBarry Smith ierr = PetscSynchronizedFlush(comm);CHKERRQ(ierr); 74107b52d57SBarry Smith } /* ----------------------------------- */ 74230dcb7c9SBarry Smith 7433677ff5aSBarry Smith /* wait on original sends */ 7443a96401aSBarry Smith if (nsends) { 745b0a32e0cSBarry Smith ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 7463a96401aSBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 7473a96401aSBarry Smith ierr = PetscFree(send_status);CHKERRQ(ierr); 7483a96401aSBarry Smith } 74989d82c54SBarry Smith ierr = PetscFree(send_waits);CHKERRQ(ierr); 7503a96401aSBarry Smith ierr = PetscFree(sends);CHKERRQ(ierr); 7513677ff5aSBarry Smith ierr = PetscFree(nprocs);CHKERRQ(ierr); 7523677ff5aSBarry Smith 7533677ff5aSBarry Smith /* pack messages to send back to local owners */ 75430dcb7c9SBarry Smith starts[0] = 0; 75530dcb7c9SBarry Smith for (i=1; i<ng; i++) { 75630dcb7c9SBarry Smith if (nownedsenders[i-1] > 1) starts[i] = starts[i-1] + nownedsenders[i-1]; 75730dcb7c9SBarry Smith else starts[i] = starts[i-1]; 75830dcb7c9SBarry Smith } 75930dcb7c9SBarry Smith nsends2 = nrecvs; 76032dcc486SBarry Smith ierr = PetscMalloc((nsends2+1)*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); /* length of each message */ 76130dcb7c9SBarry Smith for (i=0; i<nrecvs; i++) { 76230dcb7c9SBarry Smith nprocs[i] = 1; 76330dcb7c9SBarry Smith for (j=0; j<len[i]; j++) { 76430dcb7c9SBarry Smith node = recvs[2*i*nmax+2*j]-rstart; 765*f6e5521dSKarl Rupp if (nownedsenders[node] > 1) nprocs[i] += 2 + nownedsenders[node]; 76630dcb7c9SBarry Smith } 76730dcb7c9SBarry Smith } 768*f6e5521dSKarl Rupp nt = 0; 769*f6e5521dSKarl Rupp for (i=0; i<nsends2; i++) nt += nprocs[i]; 770*f6e5521dSKarl Rupp 77132dcc486SBarry Smith ierr = PetscMalloc((nt+1)*sizeof(PetscInt),&sends2);CHKERRQ(ierr); 77232dcc486SBarry Smith ierr = PetscMalloc((nsends2+1)*sizeof(PetscInt),&starts2);CHKERRQ(ierr); 773*f6e5521dSKarl Rupp 774*f6e5521dSKarl Rupp starts2[0] = 0; 775*f6e5521dSKarl Rupp for (i=1; i<nsends2; i++) starts2[i] = starts2[i-1] + nprocs[i-1]; 77630dcb7c9SBarry Smith /* 77730dcb7c9SBarry Smith Each message is 1 + nprocs[i] long, and consists of 77830dcb7c9SBarry Smith (0) the number of nodes being sent back 77930dcb7c9SBarry Smith (1) the local node number, 78030dcb7c9SBarry Smith (2) the number of processors sharing it, 78130dcb7c9SBarry Smith (3) the processors sharing it 78230dcb7c9SBarry Smith */ 78330dcb7c9SBarry Smith for (i=0; i<nsends2; i++) { 78430dcb7c9SBarry Smith cnt = 1; 78530dcb7c9SBarry Smith sends2[starts2[i]] = 0; 78630dcb7c9SBarry Smith for (j=0; j<len[i]; j++) { 78730dcb7c9SBarry Smith node = recvs[2*i*nmax+2*j]-rstart; 78830dcb7c9SBarry Smith if (nownedsenders[node] > 1) { 78930dcb7c9SBarry Smith sends2[starts2[i]]++; 79030dcb7c9SBarry Smith sends2[starts2[i]+cnt++] = recvs[2*i*nmax+2*j+1]; 79130dcb7c9SBarry Smith sends2[starts2[i]+cnt++] = nownedsenders[node]; 79232dcc486SBarry Smith ierr = PetscMemcpy(&sends2[starts2[i]+cnt],&ownedsenders[starts[node]],nownedsenders[node]*sizeof(PetscInt));CHKERRQ(ierr); 79330dcb7c9SBarry Smith cnt += nownedsenders[node]; 79430dcb7c9SBarry Smith } 79530dcb7c9SBarry Smith } 79630dcb7c9SBarry Smith } 79730dcb7c9SBarry Smith 79830dcb7c9SBarry Smith /* receive the message lengths */ 79930dcb7c9SBarry Smith nrecvs2 = nsends; 80032dcc486SBarry Smith ierr = PetscMalloc((nrecvs2+1)*sizeof(PetscInt),&lens2);CHKERRQ(ierr); 80132dcc486SBarry Smith ierr = PetscMalloc((nrecvs2+1)*sizeof(PetscInt),&starts3);CHKERRQ(ierr); 802d44834fbSBarry Smith ierr = PetscMalloc((nrecvs2+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 80330dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 804d44834fbSBarry Smith ierr = MPI_Irecv(&lens2[i],1,MPIU_INT,dest[i],tag2,comm,recv_waits+i);CHKERRQ(ierr); 80530dcb7c9SBarry Smith } 806d44834fbSBarry Smith 8078a8e0b3aSBarry Smith /* send the message lengths */ 8088a8e0b3aSBarry Smith for (i=0; i<nsends2; i++) { 8098a8e0b3aSBarry Smith ierr = MPI_Send(&nprocs[i],1,MPIU_INT,source[i],tag2,comm);CHKERRQ(ierr); 8108a8e0b3aSBarry Smith } 8118a8e0b3aSBarry Smith 812d44834fbSBarry Smith /* wait on receives of lens */ 8130c468ba9SBarry Smith if (nrecvs2) { 8140c468ba9SBarry Smith ierr = PetscMalloc(nrecvs2*sizeof(MPI_Status),&recv_statuses);CHKERRQ(ierr); 815d44834fbSBarry Smith ierr = MPI_Waitall(nrecvs2,recv_waits,recv_statuses);CHKERRQ(ierr); 816d44834fbSBarry Smith ierr = PetscFree(recv_statuses);CHKERRQ(ierr); 8170c468ba9SBarry Smith } 818a2ea699eSBarry Smith ierr = PetscFree(recv_waits);CHKERRQ(ierr); 819d44834fbSBarry Smith 82030dcb7c9SBarry Smith starts3[0] = 0; 821d44834fbSBarry Smith nt = 0; 82230dcb7c9SBarry Smith for (i=0; i<nrecvs2-1; i++) { 82330dcb7c9SBarry Smith starts3[i+1] = starts3[i] + lens2[i]; 824d44834fbSBarry Smith nt += lens2[i]; 82530dcb7c9SBarry Smith } 82676466f69SStefano Zampini if (nrecvs2) nt += lens2[nrecvs2-1]; 827d44834fbSBarry Smith 82832dcc486SBarry Smith ierr = PetscMalloc((nt+1)*sizeof(PetscInt),&recvs2);CHKERRQ(ierr); 829b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs2+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 83052b72c4aSBarry Smith for (i=0; i<nrecvs2; i++) { 83132dcc486SBarry Smith ierr = MPI_Irecv(recvs2+starts3[i],lens2[i],MPIU_INT,dest[i],tag3,comm,recv_waits+i);CHKERRQ(ierr); 83230dcb7c9SBarry Smith } 83330dcb7c9SBarry Smith 83430dcb7c9SBarry Smith /* send the messages */ 835b0a32e0cSBarry Smith ierr = PetscMalloc((nsends2+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 83630dcb7c9SBarry Smith for (i=0; i<nsends2; i++) { 83732dcc486SBarry Smith ierr = MPI_Isend(sends2+starts2[i],nprocs[i],MPIU_INT,source[i],tag3,comm,send_waits+i);CHKERRQ(ierr); 83830dcb7c9SBarry Smith } 83930dcb7c9SBarry Smith 84030dcb7c9SBarry Smith /* wait on receives */ 8410c468ba9SBarry Smith if (nrecvs2) { 8420c468ba9SBarry Smith ierr = PetscMalloc(nrecvs2*sizeof(MPI_Status),&recv_statuses);CHKERRQ(ierr); 84330dcb7c9SBarry Smith ierr = MPI_Waitall(nrecvs2,recv_waits,recv_statuses);CHKERRQ(ierr); 84430dcb7c9SBarry Smith ierr = PetscFree(recv_statuses);CHKERRQ(ierr); 8450c468ba9SBarry Smith } 84630dcb7c9SBarry Smith ierr = PetscFree(recv_waits);CHKERRQ(ierr); 84730dcb7c9SBarry Smith ierr = PetscFree(nprocs);CHKERRQ(ierr); 84830dcb7c9SBarry Smith 84907b52d57SBarry Smith if (debug) { /* ----------------------------------- */ 85030dcb7c9SBarry Smith cnt = 0; 85130dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 85230dcb7c9SBarry Smith nt = recvs2[cnt++]; 85330dcb7c9SBarry Smith for (j=0; j<nt; j++) { 85430dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"[%d] local node %d number of subdomains %d: ",rank,recvs2[cnt],recvs2[cnt+1]);CHKERRQ(ierr); 85530dcb7c9SBarry Smith for (k=0; k<recvs2[cnt+1]; k++) { 85630dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"%d ",recvs2[cnt+2+k]);CHKERRQ(ierr); 85730dcb7c9SBarry Smith } 85830dcb7c9SBarry Smith cnt += 2 + recvs2[cnt+1]; 85930dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"\n");CHKERRQ(ierr); 86030dcb7c9SBarry Smith } 86130dcb7c9SBarry Smith } 86230dcb7c9SBarry Smith ierr = PetscSynchronizedFlush(comm);CHKERRQ(ierr); 86307b52d57SBarry Smith } /* ----------------------------------- */ 86430dcb7c9SBarry Smith 86530dcb7c9SBarry Smith /* count number subdomains for each local node */ 86632dcc486SBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); 86732dcc486SBarry Smith ierr = PetscMemzero(nprocs,size*sizeof(PetscInt));CHKERRQ(ierr); 86830dcb7c9SBarry Smith cnt = 0; 86930dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 87030dcb7c9SBarry Smith nt = recvs2[cnt++]; 87130dcb7c9SBarry Smith for (j=0; j<nt; j++) { 872*f6e5521dSKarl Rupp for (k=0; k<recvs2[cnt+1]; k++) nprocs[recvs2[cnt+2+k]]++; 87330dcb7c9SBarry Smith cnt += 2 + recvs2[cnt+1]; 87430dcb7c9SBarry Smith } 87530dcb7c9SBarry Smith } 87630dcb7c9SBarry Smith nt = 0; for (i=0; i<size; i++) nt += (nprocs[i] > 0); 87730dcb7c9SBarry Smith *nproc = nt; 87832dcc486SBarry Smith ierr = PetscMalloc((nt+1)*sizeof(PetscInt),procs);CHKERRQ(ierr); 87932dcc486SBarry Smith ierr = PetscMalloc((nt+1)*sizeof(PetscInt),numprocs);CHKERRQ(ierr); 88032dcc486SBarry Smith ierr = PetscMalloc((nt+1)*sizeof(PetscInt*),indices);CHKERRQ(ierr); 881*f6e5521dSKarl Rupp for (i=0;i<nt+1;i++) (*indices)[i]=PETSC_NULL; 88232dcc486SBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&bprocs);CHKERRQ(ierr); 88330dcb7c9SBarry Smith cnt = 0; 88430dcb7c9SBarry Smith for (i=0; i<size; i++) { 88530dcb7c9SBarry Smith if (nprocs[i] > 0) { 88630dcb7c9SBarry Smith bprocs[i] = cnt; 88730dcb7c9SBarry Smith (*procs)[cnt] = i; 88830dcb7c9SBarry Smith (*numprocs)[cnt] = nprocs[i]; 88932dcc486SBarry Smith ierr = PetscMalloc(nprocs[i]*sizeof(PetscInt),&(*indices)[cnt]);CHKERRQ(ierr); 89030dcb7c9SBarry Smith cnt++; 89130dcb7c9SBarry Smith } 89230dcb7c9SBarry Smith } 89330dcb7c9SBarry Smith 89430dcb7c9SBarry Smith /* make the list of subdomains for each nontrivial local node */ 89532dcc486SBarry Smith ierr = PetscMemzero(*numprocs,nt*sizeof(PetscInt));CHKERRQ(ierr); 89630dcb7c9SBarry Smith cnt = 0; 89730dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 89830dcb7c9SBarry Smith nt = recvs2[cnt++]; 89930dcb7c9SBarry Smith for (j=0; j<nt; j++) { 900*f6e5521dSKarl Rupp for (k=0; k<recvs2[cnt+1]; k++) (*indices)[bprocs[recvs2[cnt+2+k]]][(*numprocs)[bprocs[recvs2[cnt+2+k]]]++] = recvs2[cnt]; 90130dcb7c9SBarry Smith cnt += 2 + recvs2[cnt+1]; 90230dcb7c9SBarry Smith } 90330dcb7c9SBarry Smith } 90430dcb7c9SBarry Smith ierr = PetscFree(bprocs);CHKERRQ(ierr); 90507b52d57SBarry Smith ierr = PetscFree(recvs2);CHKERRQ(ierr); 90630dcb7c9SBarry Smith 90707b52d57SBarry Smith /* sort the node indexing by their global numbers */ 90807b52d57SBarry Smith nt = *nproc; 90907b52d57SBarry Smith for (i=0; i<nt; i++) { 91032dcc486SBarry Smith ierr = PetscMalloc(((*numprocs)[i])*sizeof(PetscInt),&tmp);CHKERRQ(ierr); 911*f6e5521dSKarl Rupp for (j=0; j<(*numprocs)[i]; j++) tmp[j] = lindices[(*indices)[i][j]]; 91207b52d57SBarry Smith ierr = PetscSortIntWithArray((*numprocs)[i],tmp,(*indices)[i]);CHKERRQ(ierr); 91307b52d57SBarry Smith ierr = PetscFree(tmp);CHKERRQ(ierr); 91407b52d57SBarry Smith } 91507b52d57SBarry Smith 91607b52d57SBarry Smith if (debug) { /* ----------------------------------- */ 91730dcb7c9SBarry Smith nt = *nproc; 91830dcb7c9SBarry Smith for (i=0; i<nt; i++) { 91930dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"[%d] subdomain %d number of indices %d: ",rank,(*procs)[i],(*numprocs)[i]);CHKERRQ(ierr); 92030dcb7c9SBarry Smith for (j=0; j<(*numprocs)[i]; j++) { 92130dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"%d ",(*indices)[i][j]);CHKERRQ(ierr); 92230dcb7c9SBarry Smith } 92330dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"\n");CHKERRQ(ierr); 92430dcb7c9SBarry Smith } 92530dcb7c9SBarry Smith ierr = PetscSynchronizedFlush(comm);CHKERRQ(ierr); 92607b52d57SBarry Smith } /* ----------------------------------- */ 92730dcb7c9SBarry Smith 92830dcb7c9SBarry Smith /* wait on sends */ 92930dcb7c9SBarry Smith if (nsends2) { 930b0a32e0cSBarry Smith ierr = PetscMalloc(nsends2*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 93130dcb7c9SBarry Smith ierr = MPI_Waitall(nsends2,send_waits,send_status);CHKERRQ(ierr); 93230dcb7c9SBarry Smith ierr = PetscFree(send_status);CHKERRQ(ierr); 93330dcb7c9SBarry Smith } 93430dcb7c9SBarry Smith 93530dcb7c9SBarry Smith ierr = PetscFree(starts3);CHKERRQ(ierr); 93630dcb7c9SBarry Smith ierr = PetscFree(dest);CHKERRQ(ierr); 93730dcb7c9SBarry Smith ierr = PetscFree(send_waits);CHKERRQ(ierr); 9383677ff5aSBarry Smith 939bc8ff85bSBarry Smith ierr = PetscFree(nownedsenders);CHKERRQ(ierr); 940bc8ff85bSBarry Smith ierr = PetscFree(ownedsenders);CHKERRQ(ierr); 941bc8ff85bSBarry Smith ierr = PetscFree(starts);CHKERRQ(ierr); 94230dcb7c9SBarry Smith ierr = PetscFree(starts2);CHKERRQ(ierr); 94330dcb7c9SBarry Smith ierr = PetscFree(lens2);CHKERRQ(ierr); 94489d82c54SBarry Smith 94589d82c54SBarry Smith ierr = PetscFree(source);CHKERRQ(ierr); 94697f1f81fSBarry Smith ierr = PetscFree(len);CHKERRQ(ierr); 94789d82c54SBarry Smith ierr = PetscFree(recvs);CHKERRQ(ierr); 9483a96401aSBarry Smith ierr = PetscFree(nprocs);CHKERRQ(ierr); 94930dcb7c9SBarry Smith ierr = PetscFree(sends2);CHKERRQ(ierr); 95024cf384cSBarry Smith 95124cf384cSBarry Smith /* put the information about myself as the first entry in the list */ 95224cf384cSBarry Smith first_procs = (*procs)[0]; 95324cf384cSBarry Smith first_numprocs = (*numprocs)[0]; 95424cf384cSBarry Smith first_indices = (*indices)[0]; 95524cf384cSBarry Smith for (i=0; i<*nproc; i++) { 95624cf384cSBarry Smith if ((*procs)[i] == rank) { 95724cf384cSBarry Smith (*procs)[0] = (*procs)[i]; 95824cf384cSBarry Smith (*numprocs)[0] = (*numprocs)[i]; 95924cf384cSBarry Smith (*indices)[0] = (*indices)[i]; 96024cf384cSBarry Smith (*procs)[i] = first_procs; 96124cf384cSBarry Smith (*numprocs)[i] = first_numprocs; 96224cf384cSBarry Smith (*indices)[i] = first_indices; 96324cf384cSBarry Smith break; 96424cf384cSBarry Smith } 96524cf384cSBarry Smith } 96689d82c54SBarry Smith PetscFunctionReturn(0); 96789d82c54SBarry Smith } 96889d82c54SBarry Smith 9694a2ae208SSatish Balay #undef __FUNCT__ 9704a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingRestoreInfo" 97107b52d57SBarry Smith /*@C 97207b52d57SBarry Smith ISLocalToGlobalMappingRestoreInfo - Frees the memory allocated by ISLocalToGlobalMappingGetInfo() 97389d82c54SBarry Smith 97407b52d57SBarry Smith Collective on ISLocalToGlobalMapping 97507b52d57SBarry Smith 97607b52d57SBarry Smith Input Parameters: 97707b52d57SBarry Smith . mapping - the mapping from local to global indexing 97807b52d57SBarry Smith 97907b52d57SBarry Smith Output Parameter: 98007b52d57SBarry Smith + nproc - number of processors that are connected to this one 98107b52d57SBarry Smith . proc - neighboring processors 98207b52d57SBarry Smith . numproc - number of indices for each processor 98307b52d57SBarry Smith - indices - indices of local nodes shared with neighbor (sorted by global numbering) 98407b52d57SBarry Smith 98507b52d57SBarry Smith Level: advanced 98607b52d57SBarry Smith 98707b52d57SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS(), ISLocalToGlobalMappingCreate(), 98807b52d57SBarry Smith ISLocalToGlobalMappingGetInfo() 98907b52d57SBarry Smith @*/ 9907087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingRestoreInfo(ISLocalToGlobalMapping mapping,PetscInt *nproc,PetscInt *procs[],PetscInt *numprocs[],PetscInt **indices[]) 99107b52d57SBarry Smith { 9926849ba73SBarry Smith PetscErrorCode ierr; 99332dcc486SBarry Smith PetscInt i; 99407b52d57SBarry Smith 99507b52d57SBarry Smith PetscFunctionBegin; 99605b42c5fSBarry Smith ierr = PetscFree(*procs);CHKERRQ(ierr); 99705b42c5fSBarry Smith ierr = PetscFree(*numprocs);CHKERRQ(ierr); 99800ff320aSBarry Smith if (*indices) { 99905b42c5fSBarry Smith ierr = PetscFree((*indices)[0]);CHKERRQ(ierr); 100000ff320aSBarry Smith for (i=1; i<*nproc; i++) { 100105b42c5fSBarry Smith ierr = PetscFree((*indices)[i]);CHKERRQ(ierr); 100207b52d57SBarry Smith } 100307b52d57SBarry Smith ierr = PetscFree(*indices);CHKERRQ(ierr); 100424cf384cSBarry Smith } 100507b52d57SBarry Smith PetscFunctionReturn(0); 100607b52d57SBarry Smith } 100786994e45SJed Brown 100886994e45SJed Brown #undef __FUNCT__ 100986994e45SJed Brown #define __FUNCT__ "ISLocalToGlobalMappingGetIndices" 101086994e45SJed Brown /*@C 101186994e45SJed Brown ISLocalToGlobalMappingGetIndices - Get global indices for every local point 101286994e45SJed Brown 101386994e45SJed Brown Not Collective 101486994e45SJed Brown 101586994e45SJed Brown Input Arguments: 101686994e45SJed Brown . ltog - local to global mapping 101786994e45SJed Brown 101886994e45SJed Brown Output Arguments: 101986994e45SJed Brown . array - array of indices 102086994e45SJed Brown 102186994e45SJed Brown Level: advanced 102286994e45SJed Brown 102386994e45SJed Brown .seealso: ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingRestoreIndices() 102486994e45SJed Brown @*/ 10257087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingGetIndices(ISLocalToGlobalMapping ltog,const PetscInt **array) 102686994e45SJed Brown { 102786994e45SJed Brown PetscFunctionBegin; 102886994e45SJed Brown PetscValidHeaderSpecific(ltog,IS_LTOGM_CLASSID,1); 102986994e45SJed Brown PetscValidPointer(array,2); 103086994e45SJed Brown *array = ltog->indices; 103186994e45SJed Brown PetscFunctionReturn(0); 103286994e45SJed Brown } 103386994e45SJed Brown 103486994e45SJed Brown #undef __FUNCT__ 103586994e45SJed Brown #define __FUNCT__ "ISLocalToGlobalMappingRestoreIndices" 103686994e45SJed Brown /*@C 103786994e45SJed Brown ISLocalToGlobalMappingRestoreIndices - Restore indices obtained with ISLocalToGlobalMappingRestoreIndices() 103886994e45SJed Brown 103986994e45SJed Brown Not Collective 104086994e45SJed Brown 104186994e45SJed Brown Input Arguments: 104286994e45SJed Brown + ltog - local to global mapping 104386994e45SJed Brown - array - array of indices 104486994e45SJed Brown 104586994e45SJed Brown Level: advanced 104686994e45SJed Brown 104786994e45SJed Brown .seealso: ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingGetIndices() 104886994e45SJed Brown @*/ 10497087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingRestoreIndices(ISLocalToGlobalMapping ltog,const PetscInt **array) 105086994e45SJed Brown { 105186994e45SJed Brown PetscFunctionBegin; 105286994e45SJed Brown PetscValidHeaderSpecific(ltog,IS_LTOGM_CLASSID,1); 105386994e45SJed Brown PetscValidPointer(array,2); 105486994e45SJed Brown if (*array != ltog->indices) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_BADPTR,"Trying to return mismatched pointer"); 105586994e45SJed Brown *array = PETSC_NULL; 105686994e45SJed Brown PetscFunctionReturn(0); 105786994e45SJed Brown } 1058f7efa3c7SJed Brown 1059f7efa3c7SJed Brown #undef __FUNCT__ 1060f7efa3c7SJed Brown #define __FUNCT__ "ISLocalToGlobalMappingConcatenate" 1061f7efa3c7SJed Brown /*@C 1062f7efa3c7SJed Brown ISLocalToGlobalMappingConcatenate - Create a new mapping that concatenates a list of mappings 1063f7efa3c7SJed Brown 1064f7efa3c7SJed Brown Not Collective 1065f7efa3c7SJed Brown 1066f7efa3c7SJed Brown Input Arguments: 1067f7efa3c7SJed Brown + comm - communicator for the new mapping, must contain the communicator of every mapping to concatenate 1068f7efa3c7SJed Brown . n - number of mappings to concatenate 1069f7efa3c7SJed Brown - ltogs - local to global mappings 1070f7efa3c7SJed Brown 1071f7efa3c7SJed Brown Output Arguments: 1072f7efa3c7SJed Brown . ltogcat - new mapping 1073f7efa3c7SJed Brown 1074f7efa3c7SJed Brown Level: advanced 1075f7efa3c7SJed Brown 1076f7efa3c7SJed Brown .seealso: ISLocalToGlobalMappingCreate() 1077f7efa3c7SJed Brown @*/ 1078f7efa3c7SJed Brown PetscErrorCode ISLocalToGlobalMappingConcatenate(MPI_Comm comm,PetscInt n,const ISLocalToGlobalMapping ltogs[],ISLocalToGlobalMapping *ltogcat) 1079f7efa3c7SJed Brown { 1080f7efa3c7SJed Brown PetscInt i,cnt,m,*idx; 1081f7efa3c7SJed Brown PetscErrorCode ierr; 1082f7efa3c7SJed Brown 1083f7efa3c7SJed Brown PetscFunctionBegin; 1084f7efa3c7SJed Brown if (n < 0) SETERRQ1(comm,PETSC_ERR_ARG_OUTOFRANGE,"Must have a non-negative number of mappings, given %D",n); 1085f7efa3c7SJed Brown if (n > 0) PetscValidPointer(ltogs,3); 1086f7efa3c7SJed Brown for (i=0; i<n; i++) PetscValidHeaderSpecific(ltogs[i],IS_LTOGM_CLASSID,3); 1087f7efa3c7SJed Brown PetscValidPointer(ltogcat,4); 1088f7efa3c7SJed Brown for (cnt=0,i=0; i<n; i++) { 1089f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingGetSize(ltogs[i],&m);CHKERRQ(ierr); 1090f7efa3c7SJed Brown cnt += m; 1091f7efa3c7SJed Brown } 1092f7efa3c7SJed Brown ierr = PetscMalloc(cnt*sizeof(PetscInt),&idx);CHKERRQ(ierr); 1093f7efa3c7SJed Brown for (cnt=0,i=0; i<n; i++) { 1094f7efa3c7SJed Brown const PetscInt *subidx; 1095f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingGetSize(ltogs[i],&m);CHKERRQ(ierr); 1096f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingGetIndices(ltogs[i],&subidx);CHKERRQ(ierr); 1097f7efa3c7SJed Brown ierr = PetscMemcpy(&idx[cnt],subidx,m*sizeof(PetscInt));CHKERRQ(ierr); 1098f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingRestoreIndices(ltogs[i],&subidx);CHKERRQ(ierr); 1099f7efa3c7SJed Brown cnt += m; 1100f7efa3c7SJed Brown } 1101f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingCreate(comm,cnt,idx,PETSC_OWN_POINTER,ltogcat);CHKERRQ(ierr); 1102f7efa3c7SJed Brown PetscFunctionReturn(0); 1103f7efa3c7SJed Brown } 1104