Merge MR !76, 'jrwrigh/misc_fixes', into 'main'

refactor: Large cleanup of navierstokes.c, others

See merge request phypid/honee!76

refactor: Remove RegisterProblems_NS from global namespace

Just call the function when we go to process CL arguments

refactor: Move and rename CreateMassQFunction

Merge MR !74, 'jrwrigh/refactor_restart', into 'main'

Refactor continue/restart options and backend

See merge request phypid/honee!74

refactor: Remove -continue, add use_continue_file internally

refactor: Remove -continue_time_filename option

Merge MR !66, 'jrwrigh/consolidate_structs', into 'main'

chore: Move CeedData into Honee

See merge request phypid/honee!66

chore: Move CeedData into Honee

Merge MR !63, 'jeremy/min-petsc', into 'main'

petsc - update min version

See merge request phypid/honee!63

petsc - update min version

Merge MR !29, 'jrwrigh/consolidate_structs', into 'main'

refactor: Change `User` -> `Honee`

See merge request phypid/honee!29

refactor: Change User -> Honee

Merge MR !56, 'jrwrigh/fix_petsccount', into 'main'

fix: Use PetscCount for SegBuffer sizes

See merge request phypid/honee!56

fix: Use PetscCount for SegBuffer sizes

Changed in PETSc !7806

Merge MR !46, 'jrwrigh/advection_BL', into 'main'

feat(advdif): Add Boundary Layer IC

See merge request phypid/honee!46

feat(advdif): Add Boundary Layer IC, wind type

Merge MR !38, 'jrwrigh/advdif_sine_wave', into 'main'

feat(advdiff): Add sine and square wave ICs

See merge request phypid/honee!38

style(advdif): Add prefix to typedef enums

feat(advdif): Add sine and square wave IC

fix(advdiff): Remove STAB_TAU_ADVDIFF_SHAKIB_P tau type

It's a relic of an old design and doesn't actually exist anymore
(superceded by `STAB_TAU_ADVDIFF_SHAKIB` with it's default behavior set
to ma

fix(advdiff): Remove STAB_TAU_ADVDIFF_SHAKIB_P tau type

It's a relic of an old design and doesn't actually exist anymore
(superceded by `STAB_TAU_ADVDIFF_SHAKIB` with it's default behavior set
to match `SHAKIB_P`)

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Merge branch 'jrwrigh/div_diff_flux_func_ptr' into 'main'

refactor: Make Divergence of Diffusive Flux flexible with governing equations

See merge request phypid/honee!36

refactor(div F_diff): Change Setup arguments

feat(div F_diff): Add GetOperatorFieldData

feat(div F_diff): Use function pointers for RHS Op creation

Merge branch 'jrwrigh/qdata_boundary_grad_storage' into 'main'

fix: `QDataBoundaryGradientGet` use central storage

See merge request phypid/honee!35