Merge branch 'jolivet/housekeeping' into 'main'

Minor housekeeping

See merge request petsc/petsc!8811

checkbadSource: check style of config/*

Merge remote-tracking branch 'origin/release'

Merge branch 'balay/gcc-15-fixes' into 'release'

CI: gcc-15 fixes for arch-ci-linux-opt-arm

See merge request petsc/petsc!8585

CI: gcc-15 fixes for arch-ci-linux-opt-arm

Merge remote-tracking branch 'origin/release'

Merge branch 'barry/2024-04-03/fix-chaco-modern-c/release' into 'release'

configure: Add checkKandRFlags() to use with external pkgs that need additional compiler flags to build with gcc-14 and Xcod

Merge branch 'barry/2024-04-03/fix-chaco-modern-c/release' into 'release'

configure: Add checkKandRFlags() to use with external pkgs that need additional compiler flags to build with gcc-14 and Xcode/Clang

See merge request petsc/petsc!7433

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configure: Add checkKandRFlags() to use with external pkgs that need additional compiler flags to build with gcc-14 and Xcode/Clang

And update updatePackageCFlags() to use checkKandRFlags()

Co-Auth

configure: Add checkKandRFlags() to use with external pkgs that need additional compiler flags to build with gcc-14 and Xcode/Clang

And update updatePackageCFlags() to use checkKandRFlags()

Co-Authored-by: Satish Balay <balay@mcs.anl.gov>

chaco:

mpicc -c -Imain -fPIC -Wno-lto-type-mismatch -Wno-stringop-overflow -g -O0 -o input/check_input.o input/check_input.c
input/check_input.c: In function ‘check_assignment’:
input/check_input.c:472:12: error: type of ‘ndims’ defaults to ‘int’ [-Wimplicit-int]
472 | static int check_assignment(assignment, nvtxs, nsets_tot, ndims, local_method)
| ^~~~~~~~~~~~~~~~
input/check_input.c:472:12: error: type of ‘local_method’ defaults to ‘int’ [-Wimplicit-int]

spai:

/home/balay/petsc/arch-ci-linux-pkgs-cxx-mlib/bin/mpicc -DSPAI_USE_MPI -Wno-lto-type-mismatch -Wno-stringop-overflow -g -O -I/home/balay/petsc/arch-ci-linux-pkgs-cxx-mlib/include -c basics.c
basics.c: In function ‘init_SPAI’:
basics.c:19:3: error: implicit declaration of function ‘init_timers’ [-Wimplicit-function-declaration]
19 | init_timers();
| ^~~~~~~~~~~

scalapack:

/home/balay/petsc/arch-ci-linux-pkgs-cxx-mlib/externalpackages/git.scalapack/BLACS/SRC/sgamx2d_.c: In function ‘sgamx2d_’:
/home/balay/petsc/arch-ci-linux-pkgs-cxx-mlib/externalpackages/git.scalapack/BLACS/SRC/sgamx2d_.c:204:7: error: implicit declaration of function ‘BI_smvcopy’; did you mean ‘BI_cmvcopy’? [-Wimplicit-function-declaration]
204 | BI_smvcopy(Mpval(m), Mpval(n), A, tlda, bp->Buff);
| ^~~~~~~~~~

ptscotch:

/home/balay/petsc/arch-ci-linux-pkgs-cxx-mlib/bin/mpicc -Wno-lto-type-mismatch -Wno-stringop-overflow -g -O -I/home/balay/petsc/arch-ci-linux-pkgs-cxx-mlib/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="restrict" -DINTSIZE32 -DSCOTCH_METIS_PREFIX -I../../include -I../libscotch -c metis_graph_part_dual_f.c -o metis_graph_part_dual_f_v3.o
metis_graph_part_dual_f.c: In function ‘METIS_PARTMESHDUAL’:
metis_graph_part_dual_f.c:82:3: error: implicit declaration of function ‘METIS_PartMeshDual’; did you mean ‘metis_partmeshdual’? [-Wimplicit-function-declaration]
82 | METIS_PartMeshDual (ne, nn, eptr, eind, vwgt, vsize, ncommon, nparts, tpwgts, options, objval, epart, npart);
| ^~~~~~~~~~~~~~~~~~
| metis_partmeshdual

pastix:

/home/balay/petsc/arch-linux-c-debug/bin/mpicc -fPIC -Wno-lto-type-mismatch -Wno-stringop-overflow -g -O0 -I/home/balay/petsc/arch-linux-c-debug/include -DFORCE_INT32 -DWITH_HWLOC -I/home/balay/petsc/arch-linux-c-debug/include -DNUMA_ALLOC -DDISTRIBUTED -DWITH_SCOTCH -I/home/balay/petsc/arch-linux-c-debug/include -DVERSION='""' -DX_ARCHi686_pc_linux -DDOF_CONSTANT -DVERSION='""' -DX_ARCHi686_pc_linux -DDOF_CONSTANT -I./common/src -I./order/src -I./symbol/src -I./fax/src -I./perf/src -I./blend/src -I./kass/src -I./sopalin/src -I./utils/src -I./matrix_drivers/src -I./wrapper/src -I./sparse-matrix/src -Imurge/include -DCHOL_SOPALIN -c sopalin/obj/i686_pc_linux/coefinit_c.c -o sopalin/obj/i686_pc_linux/coefinit_c.o
In file included from ./common/src/common_pastix.h:366,
from ./sopalin/src/coefinit.c:40,
from sopalin/obj/i686_pc_linux/coefinit_c.c:8:
./sopalin/src/coefinit.c: In function ‘C_pastix_getDiag’:
./common/src/redefine_functions.h:89:30: error: implicit declaration of function ‘C_GetMpiType’; did you mean ‘GetMpiType’? [-Wimplicit-function-declaration]
89 | #define PASTIX_PREFIX_F(x) C_ ## x
| ^~
./common/src/redefine_functions.h:433:26: note: in expansion of macro ‘PASTIX_PREFIX_F’
433 | #define GetMpiType PASTIX_PREFIX_F(GetMpiType)
| ^~~~~~~~~~~~~~~
./common/src/common_pastix.h:286:24: note: in expansion of macro ‘GetMpiType’
286 | # define COMM_FLOAT GetMpiType()
| ^~~~~~~~~~
./sopalin/src/coefinit.c:554:50: note: in expansion of macro ‘COMM_FLOAT’
554 | MPI_Allreduce((void *) btemp, (void *) b, n, COMM_FLOAT, COMM_SUM, pastix_comm);
| ^~~~~~~~~~

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Merge branch 'MarDiehl/update-package-versions' into 'main'

update package versions zfp, boost, eigen, fftw, codipack, zstd, gmp

See merge request petsc/petsc!7243

remove dead license links
- Sundials is BSD
- Chaco is GPL
- https://github.com/sandialabs/Zoltan/blob/main/COPYRIGHT_AND_LICENSE does not require registering
- party: no more website?

Merge branch 'barry/2023-05-23/improve-scalapack-configure' into 'main'

Change package.libdir and package.altlibdir to more flexible package.libDirs[] and make scalapack.py handle --with-scalapack-d

Merge branch 'barry/2023-05-23/improve-scalapack-configure' into 'main'

Change package.libdir and package.altlibdir to more flexible package.libDirs[] and make scalapack.py handle --with-scalapack-dir

See merge request petsc/petsc!6499

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change package.libdir and package.altlibdirs to more flexible package.libDirs

Merge remote-tracking branch 'origin/release'

Merge branch 'barry/2023-05-09/update-manual-additional-information/release' into 'release'

Update some discussions in the users manual

See merge request petsc/petsc!6442

Update some discussions in the users manual

Also fix 32bit, 64bit, 32 bit, 64 bit throughout and blas and blas/lapack

Merge branch 'balay/configure-remove-sudo' into 'main'

configure: remove usage of sudo with external-packages

See merge request petsc/petsc!4333

configure: remove usage of sudo with external-packages

Merge remote-tracking branch 'origin/release'

Merge branch 'balay/fix-build-on-theta' into 'release'

Fix build failure on theta triggered by 36c166f2bbb44c2987d8fb7385fbe9e2d1cfb0c8

See merge request petsc/petsc!3872

Fix build failure on theta triggered by 36c166f2bbb44c2987d8fb7385fbe9e2d1cfb0c8

Warning:
-dynamic was already seen on command line, overriding with -shared.

/usr/lib64/gcc/x86_64-suse-linux/7/../.

Fix build failure on theta triggered by 36c166f2bbb44c2987d8fb7385fbe9e2d1cfb0c8

Warning:
-dynamic was already seen on command line, overriding with -shared.

/usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/bin/ld: /opt/cray/pe/atp/3.8.1/lib/libAtpSigHandler.a(libAtpSigHandler_la-libAtpSigHandler.o): in function `(anonymous namespace)::get_frontend_a\
ddrinfo(char const*, char const*)':
(.text+0xb2d): warning: Using 'getaddrinfo' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking


/usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/bin/ld: warning: alignment 8 of symbol `ARCHITECTURE' in main/user_params.o is smaller than 32 in /opt/cray/pe/pmi/5.0.16/lib64/libpmi.a(_pmi_top\
ology_discovery.o)

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Merge branch 'hongzh/fix-autodiff-maint' into 'master'

Fix autodiff errors due to locked vec

See merge request petsc/petsc!2810

chaco: update to version without namespace conflict with adolc [wrt divide()]

Merge branch 'balay/updatePackageFlags' into 'master'

configure: add updatePackageCFlags(), updatePackageFFlags(),...

See merge request petsc/petsc!3202

configure: self.setCompilers.pushLanguage() -> self.pushLanguage()

configure: add updatePackageCFlags(), updatePackageFFlags(), updatePackageCxxFlags() to manage xcode/clang-12, gfortran-10, Nag requirements

xcode/clang-12 is defaulting to -Werror=implicit-function

configure: add updatePackageCFlags(), updatePackageFFlags(), updatePackageCxxFlags() to manage xcode/clang-12, gfortran-10, Nag requirements

xcode/clang-12 is defaulting to -Werror=implicit-function-declaration, so use -Wno-implicit-function-declaration with externalpackages

reorganize gfortran-10 [-fallow-argument-mismatch], Nag ['-mismatch','-dusty','-dcfuns'] requirements

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