Fixed out-dated URLS using make checkbadURLS REPLACE=1

One manual fix of https://en.wikipedia.org/wiki/Buckingham_π_theorem since the automatic tool dropped the first _ for some reason
Manual fix of

Fixed out-dated URLS using make checkbadURLS REPLACE=1

One manual fix of https://en.wikipedia.org/wiki/Buckingham_π_theorem since the automatic tool dropped the first _ for some reason
Manual fix of //faq.html since the automatic tool incorrectly replaced /faq.html to //faq.html in some locations

These are largely updates of http to https but have a variety of other website location changes

Once this branch is in master individual developers can run make checkbadURLS and fix URLs related to their projects manually

Commit-type: bug-fix, documentation

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configure: fix pkg-config for C++

There is never a C++ attribute, so the extra info cxxcompiler and
cxxflags_extra were not written.

Merge branch 'master' of bitbucket.org:petsc/petsc

Merged in barry/update-deprecate-functions (pull request #1654)

Change PETSC_DEPRECATED to PETSC_DEPRECATED_FUNCTION and PETSC_DEPRECATED_TYPEDEF for code clarity

Change PETSC_DEPRECATED to PETSC_DEPRECATED_FUNCTION and PETSC_DEPRECATED_TYPEDEF for code clarity

and to make the macros match the ones for ENUM and MACRO. Add version information for almost all de

Change PETSC_DEPRECATED to PETSC_DEPRECATED_FUNCTION and PETSC_DEPRECATED_TYPEDEF for code clarity

and to make the macros match the ones for ENUM and MACRO. Add version information for almost all deprecations
in a single consistent format. Remove a couple of unneeded deprecated functions that could be inlined.

Commit-type: style-fix

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Merged in barry/fix-naming-cg-methods (pull request #1650)

Fixed inconsistent naming with CG methods for TR

Approved-by: Matthew Knepley <knepley@gmail.com>

Fixed inconsistent naming with CG methods for TR

Some of the KSPXXX macros for xxx had an inconsisten KSPCGXXX that was not in the string xxx name
The KSPCGXXX was used for KSPCreate_CGXXX() but the

Fixed inconsistent naming with CG methods for TR

Some of the KSPXXX macros for xxx had an inconsisten KSPCGXXX that was not in the string xxx name
The KSPCGXXX was used for KSPCreate_CGXXX() but the other method functions were missing the CG, for example, KSPSolve_XXX()
(these meant using tags to find functions was cumbersome due to the special cases)
Missing Fortran macro

Removed the extraneous CG from the macros and the function usage; now all macros and functions have consistent PETSc style usage
that match the string names
Added deprecation messages for out-dated use
Added new configure check for PETSC_DEPRECATED_MACRO

I decided to remove the CG from the KSPCGXXX instead of adding a cg to the string name because 1) it was not possible to deprecate
the string names at compile time, we would have to have runtime warnings. 2) the string names are shorter, 3) the stcg already
had a cg (at the end and not the beginning) and that would have to be removed or we'd have the absurd cgstcg. If starting from
sratch today not worrying about legacy I would have all the string names begin with cg consistently (and naturally the KSPXXX would
have them as well), but for legacy reasons we have the current naming which is not ideal because it does not clearly
indicate which methods are CG methods. (We have this problem with other subclasses in PETSc also).

Commit-type: style-fix

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Merge remote-tracking branch 'origin/maint'

configure: use __attribute() notation consistently

Reported-by: Patrick Sanan <patrick.sanan@gmail.com>

Merge branch 'maint'

Merged in jed/depricate-KSP_DIVERGED_PCSETUP_FAILED/maint (pull request #1528)

ksp: correctly DEPRECATE KSP_DIVERGED_PCSETUP_FAILED change in c0decd05c6

Approved-by: BarryFSmith <bsmith@mcs.anl.gov>

configure: check for and use PETSC_DEPRECATED_ENUM

older gcc, pgi, intel compilers don't support it

icc gives a warning - so add this to filterCompileOutput()

Merged in balay/with-package-script (pull request #1445)

configure add option --with-package-scripts. Also update nargs.py as required

Approved-by: Karl Rupp <me@karlrupp.net>

configure: re-implement overloaded -download-xxx=/directory option as -with-package-scripts=<pyscripts>

The prior feature was added in 6dd73af6134 ab079e5dc84

Tested with:
./configure --with-packag

configure: re-implement overloaded -download-xxx=/directory option as -with-package-scripts=<pyscripts>

The prior feature was added in 6dd73af6134 ab079e5dc84

Tested with:
./configure --with-package-scripts=/home/balay/tmp/foobar/test-sundials.py:/home/balay/tmp/test-metis.py --help |egrep "(test-sundials|test-metis)"

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Merge branch 'master' into jpusztay/feature-swarm-symplectic-example

Merge branch 'master' into knepley/feature-snes-patch

Not sure if this has done the right thing because there are no tests
yet. Also, the fortran stubs break (it doesn't know what to do with
SNESCo

Merge branch 'master' into knepley/feature-snes-patch

Not sure if this has done the right thing because there are no tests
yet. Also, the fortran stubs break (it doesn't know what to do with
SNESCompositeType), and I don't know how to fix it.

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Merged petsc/petsc into master

Merged petsc/petsc into master

Merge branch 'pr1210/francesco_ballarin/python3-string/master' [PR #1210]

* pr1210/francesco_ballarin/python3-string/master:
Stop using string module for string manipulations, for compatibility with

Merge branch 'pr1210/francesco_ballarin/python3-string/master' [PR #1210]

* pr1210/francesco_ballarin/python3-string/master:
Stop using string module for string manipulations, for compatibility with python3
Uses
obj.replace(…)
rather than
import string
string.replace(obj, ...)

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Remove if statement, as suggest in comments to PR 1210

Stop using string module for string manipulations, for compatibility with python3

Merge branch 'master' into jpusztay/feature-swarm-symplectic-example

Merge branch 'master' into jpustay/feature-swarm-example

Merged petsc/petsc into master

Merge branch 'master' into arcowie-rem/feature-error-logging

* master: (393 commits)
Bib: Update reference
Mat: Doc fix
Bib: Updated ref
PetscDS: Doc fixes
PC+LU: Do not try to refactor an

Merge branch 'master' into arcowie-rem/feature-error-logging

* master: (393 commits)
Bib: Update reference
Mat: Doc fix
Bib: Updated ref
PetscDS: Doc fixes
PC+LU: Do not try to refactor an already factored matrix
Mat: Small fix for checking and docs
Mat: Added MatSetFactorType() - Needed it when making a shell matrix look factored
PetscDS: Added PetscDSUpdateBoundary() - Lets the user change the boundary condition
single precision produces different convergence history
p4est: has a dependency on zlib - so handle it correctly
Add -mat_mffd_complex to use the Lyness complex number trick to compute J_u * v instead of differencing.
Replace VecWAXPY by VecAXPY if needed
Revert "Replace VecWAXPY by VecAXPY if needed"
Replace VecWAXPY by VecAXPY if needed
MatHermitianTransposeGetMat and MatCreateVecs
ex19: Updated test filter to avoid false positives.
DM: Improved Global-To-Natural docs Suggested-by: Josh L <ysjosh.lo@gmail.com>
Do not build shared openblas when doing static build
Upgrade OpenBLAS to 0.3.3
test: add alt output file for changes in OSX-10.14 and Xcode-10.0 [perhaps related to ML]
...

Conflicts:
src/vec/is/utils/vsectionis.c

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