Merge remote-tracking branch 'origin/release'

Merge branch 'barry/2022-05-09/fix-petsc-options-test' into 'release'

Should not force the use of PETSC_OPTIONS when gmakegentest.py is run to be...

See merge request petsc/petsc!5240

Should not force the use of PETSC_OPTIONS when gmakegentest.py is run to be the value used when the actual tests are run

Only the value of PETSC_TEST_OPTIONS is kept

Commit-type: bug-fix
/spend 10m

Should not force the use of PETSC_OPTIONS when gmakegentest.py is run to be the value used when the actual tests are run

Only the value of PETSC_TEST_OPTIONS is kept

Commit-type: bug-fix
/spend 10m
Reported-by: Stefano Zampini <stefano.zampini@gmail.com>

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Merge branch 'balay/disable-python2' into 'main'

Balay/disable python2

See merge request petsc/petsc!5131

disable python2 support - now python3.4+ is required
- update CI tests to use python3
- continue to use python2 on MacOS CI [due to python3 issues on 10.15.7]

Merge branch 'jczhang/feature-add-micro-benchmarks' into 'main'

Add some GPU microbenchmarks and also support *.hip.cpp tests

See merge request petsc/petsc!4954

Make: support *.hip.cpp tests

Merge branch 'barry/2021-09-24/add-raja-support' into 'main'

Add --download-raja support

See merge request petsc/petsc!4503

Add --download-raja support

Add some code from RAJA source for checking that PETSc is correctly linking to raja with and without CUDA

Commit-type: feature
\spend 3h

Merge remote-tracking branch 'origin/release'

Merge branch 'barry/2021-06-09/petsc-test-options' into 'release'

Organized the PETSC_OPTIONS used in .gitlab-ci.yml to be provided by the appropriate package

See merge request petsc/petsc!4075

Organized the PETSC_OPTIONS used in .gitlab-ci.yml to be provided by the appropriate package

This allows users running the tests to have the same behavior as the public CI

Commit-type: CI, configur

Organized the PETSC_OPTIONS used in .gitlab-ci.yml to be provided by the appropriate package

This allows users running the tests to have the same behavior as the public CI

Commit-type: CI, configure, error-checking
\spend 1h
Thanks-to: Jed Brown <jed@jedbrown.org>

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Merge branch 'jolivet/fix-defined-define' into 'main'

requires: define -> requires: defined

Closes #984

See merge request petsc/petsc!4265

requires: define -> requires: defined

Merge remote-tracking branch 'origin/balay/add-valgrind.h'

valgrind.h: add to petsc repo

See merge request petsc/petsc!4094

testsuite: set and use PETSCTEST_VALGRIND flag - when the test suite is run with valgrind

Merge branch 'barry/2020-06-30/gcov-use-gmake-filelist' into 'master'

Barry/2020 06 30/gcov use gmake filelist

See merge request petsc/petsc!2939

Fixes and improvements to gcov mechamism

* do not use --coverage on external files, just wastes time
* Use list of files generated by gmakegentest.py for gcov files instead of walking the directory

Fixes and improvements to gcov mechamism

* do not use --coverage on external files, just wastes time
* Use list of files generated by gmakegentest.py for gcov files instead of walking the directory
* Have gcov.py generate unique directories so different builds or phases of builds won't overwrite each other
* fix failure with old version of make
* fix more UnicodeDecodeError: 'utf-8' codec can't decode byte 0x88 in position 7892: invalid start byte errors

* Uses new approach for tracking tested lines and lines of source code (much more accurate than old code)
* now works for ifdef lines that appear in only some builds
* makes table and html files for source file changes since master branch
* makes seperate table for C source and C fortran stub source
* fix up pipeline-analyze job to generate and upload appropriate artifacts

Commit-type: feature
/spend 20h

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Merge branch 'barry/2020-07-16/kokkos' into 'master'

Barry/2020 07 16/kokkos Installe Kokkos, example using Kokkos, testing infrastructure for Kokkos

See merge request petsc/petsc!2984

Add Kokkos test example, testing infrastructure and to CI

Move updates to gmake system for double suffix from adams/feature-dmplex-snes-landau-kokkos-barry

Commit-type: feature
Funded-by: ECP
/spen

Add Kokkos test example, testing infrastructure and to CI

Move updates to gmake system for double suffix from adams/feature-dmplex-snes-landau-kokkos-barry

Commit-type: feature
Funded-by: ECP
/spend 15h30m

Thanks-to: Junchao Zhang <junchao.zhang@gmail.com>

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Merge branch 'scott/config-hip' into 'master'

HIP and SYCL configuration

See merge request petsc/petsc!2973

Enable HIP and SYCL configuration

This adds support for HIP and SYCL configuration.

HIP is both a compiler (hipcc) and a package to be searched for
(hipblas, hipsparse) similar to CUDA.
Language:

Enable HIP and SYCL configuration

This adds support for HIP and SYCL configuration.

HIP is both a compiler (hipcc) and a package to be searched for
(hipblas, hipsparse) similar to CUDA.
Language: HIP; Compiler: HIPCC (even though it is C++)

SYCL is currently implemented for searching only the dpcpp compiler.
Because Intel's oneAPI is very similar to MKL, Blas/Lapack is handled by
those packages.
Language: SYCL; Compiler: SYCLCXX

Although it is a C++ compiler, both hipcc and dpcpp are very slow.
Currently using the .hip.cpp and .sycl.cxx extensions although more work
will be needed for testings. See the kokkos work.

This includes preliminary changes for pipeline testing
The HIP_PLATFORM is an environment variable that chooses the backend.
So one configuration file, but the platform is specified in
.gitlab-ci.yml.

This includes beta versions of configuration files for what could be used on
Frontier. This is both the HIP version and CUDA versions for enabling
comparisons.

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Merge remote-tracking branch 'origin/maint'

Merge branch 'scott/test-small-fixes' into 'maint'

Few fixes for test harness

See merge request petsc/petsc!2807

Multiple fixes to test system

Allow setting duplicated loop variables in subtests
Fix stray line in gmakegentest.py and the problem with redundant variables in loop variables.
Also fixes some output

Multiple fixes to test system

Allow setting duplicated loop variables in subtests
Fix stray line in gmakegentest.py and the problem with redundant variables in loop variables.
Also fixes some output_file checks by moving them to getCmds
Reported by: Pierre Jolivet

Fixes default test labeling: Tests with no fields (default tests) were
getting not getting the '_1' added to the label the way other tests were.
Fixes Issue #625
Reported by: Vaclav Hapla

Add diff_args to list of accepted keywords: This passes arguments
petscdiff. Includes documentation for new option
Fixes Issue #616
Reported by: Stefano Zampini

Have build requires propogate to all tests
Requested by: Stefano Zampini

Unset env's in petscdiff to avoid Window's 32-bit problems with xargs.

Fixes for ksp/ksp/tutorials/ex11.c (deflation)
The other fixes exposed some problems with the way this test was
written so clean it up.

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