Merge branch 'jacobf/2022-02-23/variadic-chkerr' into 'main'

Variadic CHKERRQ()

See merge request petsc/petsc!4889

The great renaming:

- CHKERRQ() -> PetscCall()
- CHKERRV() -> PetscCallVoid()
- CHKERRMPI() -> PetscCallMPI()
- CHKERRABORT() -> PetscCallAbort()
- CHKERRCONTINUE() -> PetscCallContinue()
- CHKERRXX

The great renaming:

- CHKERRQ() -> PetscCall()
- CHKERRV() -> PetscCallVoid()
- CHKERRMPI() -> PetscCallMPI()
- CHKERRABORT() -> PetscCallAbort()
- CHKERRCONTINUE() -> PetscCallContinue()
- CHKERRXX() -> PetscCallThrow()
- CHKERRCXX() -> PetscCallCXX()
- CHKERRCUDA() -> PetscCallCUDA()
- CHKERRCUBLAS() -> PetscCallCUBLAS()
- CHKERRCUSPARSE() -> PetscCallCUSPARSE()
- CHKERRCUSOLVER() -> PetscCallCUSOLVER()
- CHKERRCUFFT() -> PetscCallCUFFT()
- CHKERRCURAND() -> PetscCallCURAND()
- CHKERRHIP() -> PetscCallHIP()
- CHKERRHIPBLAS() -> PetscCallHIPBLAS()
- CHKERRHIPSOLVER() -> PetscCallHIPSOLVER()
- CHKERRQ_CEED() -> PetscCallCEED()
- CHKERR_FORTRAN_VOID_FUNCTION() -> PetscCallFortranVoidFunction()
- CHKERRMKL() -> PetscCallMKL()
- CHKERRMMG() -> PetscCallMMG()
- CHKERRMMG_NONSTANDARD() -> PetscCallMMG_NONSTANDARD()
- CHKERRCGNS() -> PetscCallCGNS()
- CHKERRPTSCOTCH() -> PetscCallPTSCOTCH()
- CHKERRSTR() -> PetscCallSTR()
- CHKERRTC() -> PetscCallTC()

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rewrote the PetscLL macros as functions to let the linter understand them. Also helps
reduce the staggering amount of code duplication in Mat

chkerr and friends wrapped

Merge branch 'barry/2021-05-16/fix-double-lines' into 'main'

Fix typos in source

See merge request petsc/petsc!3984

Remove all double blank lines from source

Commit-type: petsc-style
/2h

Merge branch 'dalcinl/options-yaml' into 'master'

Enhancements to YAML options

See merge request petsc/petsc!3629

YAML: Inserting all files/strings seen in other files and command line

PetscOptions: Add public #define PETSC_MAX_OPTION_NAME

Merge branch 'dalcinl/options-yaml' into 'master'

Enancements to YAML options

See merge request petsc/petsc!3618

Enhancements to YAML options

* Pass PetscOptions object to PetscOptionsInsertFileYAML().

* PetscOptionsInsert{File|String}YAML() are now always available and
will fail at runtime if PETSc was not

Enhancements to YAML options

* Pass PetscOptions object to PetscOptionsInsertFileYAML().

* PetscOptionsInsert{File|String}YAML() are now always available and
will fail at runtime if PETSc was not configured with YAML.

* Mapping keys starting with '$$' are considered dummy and not inserted.
These keys can be used with `!include` tags and for the definition of
YAML anchors to be expanded later with the merge key '<<'.

* Sequences of one-mappings insert an option with the list of keys.
For example, the following YAML options

```yaml
map:
- key0: abc
- key1: xyz
- key2: 123
```

insert the following options

```
-map key0,key1,key2
-map_key0 abc
-map_key1 xyz
-map_key2 123
```

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Merge branch 'barry/2020-08-16/fix-source-formatting' into 'master'

Turn on checkbadSource test to generate an error when found; fix all source code that causes errors

See merge request petsc/petsc

Merge branch 'barry/2020-08-16/fix-source-formatting' into 'master'

Turn on checkbadSource test to generate an error when found; fix all source code that causes errors

See merge request petsc/petsc!3064

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Turn on checkbadSource test to generate an error when found; fix all source code that causes errors

Commit-type: portability-fix, testing-fix, style-fix, feature, maintainability
/spend 1.5h

Merge branch 'haplav/improve-options-monitor' into 'master'

improve options monitor

See merge request petsc/petsc!2912

-options_monitor and -options_monitor_cancel have immediate effect.

* No need to call for PetscOptionsSetFromOptions
* PetscOptionsMonitorDefault now uses plain PetscPrintf if NULL context (viewer)

-options_monitor and -options_monitor_cancel have immediate effect.

* No need to call for PetscOptionsSetFromOptions
* PetscOptionsMonitorDefault now uses plain PetscPrintf if NULL context (viewer) is passed
* so we can avoid creating a viewer early in PetscInitialize
* -options_monitor_cancel cancels just hard-wired monitors
* Remove PetscOptionsSetFromOptions
* Remove PetscOptionsMonitorCancel
* Introduce concept of options with absolute precedence
* -options_monitor,-options_monitor_cancel,-h,-help,-skip_petscrc,-options_file_yaml,-options_string_yaml
* PetscOptionsInsert: improve -skip_petscrc handling
* Call PetscOptionsInsertArgs just once per PetscOptionsInsert
* Improve related manpages

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Merge branch 'tisaac/feature-yaml-string' into 'master'

Added PetscOptionsInsertStringYAML and -options_string_yaml

See merge request petsc/petsc!2791

Added PetscOptionsInsertStringYAML and -options_string_yaml

In order to test this new feature, I had to add the ability to parse strings
with newlines in the 'args:' of tests.

Merge remote-tracking branch 'origin/haplav/petscoptionsbegin-title-obligatory'

PetscOptionsBegin: Title argument made obligatory

to avoid (null) headers in -help output.

Additionally
* PetscOptionsBegin() inarg validation
* fix a few examples which break this
* fix TaoMatGetS

PetscOptionsBegin: Title argument made obligatory

to avoid (null) headers in -help output.

Additionally
* PetscOptionsBegin() inarg validation
* fix a few examples which break this
* fix TaoMatGetSubMat() to use PetscObjectOptionsBegin() instead of PetscOptionsBegin()
* fix weird position of PetscOptionsEnd() in TAO examples

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Merge branch 'stefanozampini/petscpartitioner-target-weights' into 'master'

Fix PetscPartitioner and add support for target partition weights

See merge request petsc/petsc!2333

Add PetscOptionsDeprecateNoObject

this is to deprecate options like this
PetscOptionsGetBool(NULL,NULL,"....)

Merge branch 'barry/feature-boundedint'

Merge branch 'maint'

Remove use of _ and __ in front of PETSc include guards. Reason: C99 Reserved Identifiers

Commit-type: portability-fix

Added PetscOptionsBoundInt(), error if value below bound, and PetscOptionsRangeInt(), error if out of range

Replaced a small amount of the usage in the source code. Easy, slightly boring process to

Added PetscOptionsBoundInt(), error if value below bound, and PetscOptionsRangeInt(), error if out of range

Replaced a small amount of the usage in the source code. Easy, slightly boring process to replace the rest

Commit-type: error checking

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