PetscEListFind() and PetscEnumFind()

New functions for searching elists and enums

PetscFileModes: add string enumeration for PetscFileMode

Merge branch 'master' of bitbucket.org:petsc/petsc

Merged petsc/petsc into rmills/petsc master

Merge branch 'barry/rm-xxxregisterdynamic' into jed/ts-eimex

PetscObjectComposeFunctionDynamic() and TSRegisterDynamic() were
replaced by PetscObjectComposeFunction() and TSRegister(), both of which

Merge branch 'barry/rm-xxxregisterdynamic' into jed/ts-eimex

PetscObjectComposeFunctionDynamic() and TSRegisterDynamic() were
replaced by PetscObjectComposeFunction() and TSRegister(), both of which
drop the string name argument.

* barry/rm-xxxregisterdynamic: (82 commits)
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Conflicts:
src/ts/interface/tsregall.c

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removed string version of function name for XXXRegister(), PetscFunctionListAdd() and PetscObjectComposeFunction()

removed path and MPI_Comm arguments from PetscFunctionListFind/Add()

removed path argument to XXXInitializePackage() and XXXRegister()

removed XXXRegisterDynamic() but kept the APIs for everything else underneath the same
phase I of the update to handling registering function pointers

segbuffer: g++ does not like casting int*restrict* to void*, void** okay

segbuffer: add PetscSegBufferGetInts() to encourage use of PETSC_RESTRICT

segbuffer: create wrapper structure

The old structure exposed the linked list property of the implementation.
Now we have a simple wrapper structure so that implementation detail is
not leaked. This

segbuffer: create wrapper structure

The old structure exposed the linked list property of the implementation.
Now we have a simple wrapper structure so that implementation detail is
not leaked. This will also make it possible to implement some thread-safe
operations.

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segbuffer: add PetscSegBufferGetSize() and PetscSegBufferUnuse()

* PetscSegBufferGetSize: the total size is usually needed for other purposes,
but it's known by the segbuffer so we may as well mak

segbuffer: add PetscSegBufferGetSize() and PetscSegBufferUnuse()

* PetscSegBufferGetSize: the total size is usually needed for other purposes,
but it's known by the segbuffer so we may as well make it available in case
the caller isn't counting themselves.

* PetscSegBufferUnuse: if the caller is trying to amortize access, they might
get more space than they actually need. This allows them to return that space.

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Merge branch 'barry/fix-petsctime'

Changed PetscTime(), PetscTimeSubtract(), PetscTimeAdd() to inline functions from macros
removed PetscGetTime()

Merge branch 'barry/ams' into master

* commit 'eb4227cfdd169cc03749ba3ef12d3932f2f322bf': (24 commits)
forgotten files
basic snooping on PetscStack is now working
split AMSJavascript.py into A

Merge branch 'barry/ams' into master

* commit 'eb4227cfdd169cc03749ba3ef12d3932f2f322bf': (24 commits)
forgotten files
basic snooping on PetscStack is now working
split AMSJavascript.py into AMS.py for AMS javascript and AMSSnoopObjects.py for example showing published objects
fix bug in previous commit
added error returns for JSON-RPC AMS calls
don't let web accessor change length of array setting to publisher
Pass arrays of values back from webserver to AMS publisher
fix for last commit, missing errorcode and wrong variable name
KSPLogResidualHistory and SNESLogConvergenceHistory need to lock for AMS and have error checking when called
shutdown webserver if you started it on PetscFinalize(), what about when crash, should still shut it down
Added support for starting server automatically by application code messed around finding a bug in AMS
got value back from webclient to application
goddman script Jed sent me doesn;t work, it loses changes
split webserver into standalone problem that is not part of running PETSc application had to do this since impossible for AMS publisher and accessor to be in same application better to just totally redo AMS! But that is to large a project
moved webserver code to its own directory and file
added callback for changable fields in pyjs representation of AMS memories
add AMS viewer for PC, server can only run without any memory debugging
changed AMS publishing to use the Viewer model added simple AMS viewer for mat,ksp,snes,ts added --ksp/snes/ts_view_pre for starting the viewer before the solve (ugly but useful for AMS) added PetscStackCalls around AMS function calls when appropriate (note do not want these in webserver because do not webserver stopping just because AMS server is down
more work on moving AMS model to viewer
Fix for SNESSetConvergenceHistory() when input a is null
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Merge branch 'master' into barry/ams

Conflicts:
include/petscviewer.h
src/sys/classes/viewer/interface/viewreg.c
src/sys/threadcomm/interface/threadcomm.c

basic snooping on PetscStack is now working

Merged in jed/plex-scalable-partition-closure (pull request #11)

DMPlexCreatePartitionClosure: replace quadratic algorithm

Merge branch 'jed/plex-scalable-partition-closure' of bitbucket.org:petsc/petsc into knepley/plex

PetscSegBuffer: add extraction to existing buffer and in-place

* PetscSegBufferExtractAlloc: allocates new memory (old behavior)

* PetscSegBufferExtractTo: use provided buffer

* PetscSegBufferExtr

PetscSegBuffer: add extraction to existing buffer and in-place

* PetscSegBufferExtractAlloc: allocates new memory (old behavior)

* PetscSegBufferExtractTo: use provided buffer

* PetscSegBufferExtractInPlace: pack into space that will be used by
next call to PetscSegBufferGet().

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PetscSegBuffer: make segmented buffer from PetscBuildTwoSided reusable

Segmented buffers are used to incrementally build lists without knowing
the size up-front. The addresses of insertion locations

PetscSegBuffer: make segmented buffer from PetscBuildTwoSided reusable

Segmented buffers are used to incrementally build lists without knowing
the size up-front. The addresses of insertion locations are stable,
unlike with re-allocate and copy mechanisms.

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Merge branch 'master' into jed/ts-eimex

Sync to include Git conversion, PETSC_EXTERN, and minor API changes.

Conflicts:
src/ts/interface/tsregall.c

add AMS viewer for PC, server can only run without any memory debugging

changed AMS publishing to use the Viewer model
added simple AMS viewer for mat,ksp,snes,ts
added --ksp/snes/ts_view_pre for starting the viewer before the solve (ugly but useful for AMS)
added PetscS

changed AMS publishing to use the Viewer model
added simple AMS viewer for mat,ksp,snes,ts
added --ksp/snes/ts_view_pre for starting the viewer before the solve (ugly but useful for AMS)
added PetscStackCalls around AMS function calls when appropriate (note do not want these in webserver because do not webserver stopping just because AMS server is down

show more ...