| #
580bdb30
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| 07-Jun-2019 |
Barry Smith <bsmith@mcs.anl.gov> |
Add PetscArraycmp(), PetscArraycpy(), PetscArrayzero(), PetscArraymove(), update code to use new forms
Replace a couple multi-mallocs with a single malloc
Replace backwards loops in MatSetValues_*()
Add PetscArraycmp(), PetscArraycpy(), PetscArrayzero(), PetscArraymove(), update code to use new forms
Replace a couple multi-mallocs with a single malloc
Replace backwards loops in MatSetValues_*() with PetscArraymove()
Commit-type: style-fix, feature
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| #
44ef3d73
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| 15-Jun-2019 |
Barry Smith <bsmith@mcs.anl.gov> |
The -help message for PetscOptionInt(), PetscOptionsReal() etc now includes the newly set value as well as the previous value
Example:
./toy -help -tao_catol 100 now produces
-tao_catol <0. : 100.
The -help message for PetscOptionInt(), PetscOptionsReal() etc now includes the newly set value as well as the previous value
Example:
./toy -help -tao_catol 100 now produces
-tao_catol <0. : 100.>: Stop if constraints violations within (TaoSetConstraintTolerances)
Commit-type: feature
Reported-by: Robert Nr Nourgaliev <nourgaliev1@llnl.gov>
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| #
613bfe33
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| 02-Jun-2019 |
BarryFSmith <bsmith@mcs.anl.gov> |
Merged in barry/update-collective-on (pull request #1744)
Update the use of Collective on in the manual pages to reflect the new style
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| #
d083f849
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| 01-Jun-2019 |
Barry Smith <bsmith@mcs.anl.gov> |
Update the use of Collective on in the manual pages to reflect the new style
Commit-type: style-fix, documentation
Thanks-to: Patrick Sanan <patrick.sanan@gmail.com>
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| #
ef135d0e
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| 01-Jun-2019 |
Satish Balay <balay@mcs.anl.gov> |
Merge remote-tracking branch 'origin/psanan/docs-remove-manconcepts' [PR #1733]
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| #
9b3528b0
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| 01-Jun-2019 |
Lisandro Dalcin <dalcinl@gmail.com> |
Merged in dalcinl/with-batch (pull request #1721)
WithBatch: More compile-time checks
Approved-by: Jed Brown <jed@59a2.org>
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| #
0f5d826a
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| 30-May-2019 |
Patrick Sanan <patrick.sanan@gmail.com> |
Man pages: remove Concepts: fields
These fields were previously stripped from the man pages by logic removed in
21a59cba2737d49dc2f0bd12c08db0d2a3f3f209
Remove these fields from all man pages (but
Man pages: remove Concepts: fields
These fields were previously stripped from the man pages by logic removed in
21a59cba2737d49dc2f0bd12c08db0d2a3f3f209
Remove these fields from all man pages (but not from examples).
This is accomplished with GNU sed (gsed on OS X), with the following commands.
*Warning* that this type of command can corrupt a .git directory,
so be cautious in reusing or modifying these commands. They first look
for and delete matching lines with a following line consisting of only whitespace,
and then delete any remaining matching lines.
find src -type f -not -path "*/examples/*" -not -name "*.html" -not -name "*.bib" -exec gsed -i '/Concepts:/ {N; /\n\s*$/d}' {} +
find src -type f -not -path "*/examples/*" -not -name "*.html" -not -name "*.bib" -exec gsed -i '/Concepts:/d' {} +
find include -type f -not -path "*/examples/*" -not -name "*.html" -not -name "*.bib" -exec gsed -i '/Concepts:/ {N; /\n\s*$/d}' {} +
find include -type f -not -path "*/examples/*" -not -name "*.html" -not -name "*.bib" -exec gsed -i '/Concepts:/d' {} +
Hints on the sed command obtained from: https://unix.stackexchange.com/questions/100754/how-to-delete-a-specific-line-and-the-following-blank-line-using-gnu-sed
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| #
15a5570d
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| 29-May-2019 |
Lisandro Dalcin <dalcinl@gmail.com> |
Sys: Include and use limits.h
* Remove configure check for C89 limits.h
* #define PETSC_BITS_PER_BYTE CHAR_BIT
* #define PETSC_IS_COLORING_MAX {UCHAR|USHRT}_MAX
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| #
7a003026
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| 26-May-2019 |
Jed Brown <jed@59a2.org> |
Merged in jed/sizeof (pull request #1706)
Migrate sizeof-related definitions to run-time/non-batch as appropriate
Approved-by: Lisandro Dalcin <dalcinl@gmail.com>
Approved-by: BarryFSmith <bsmith@m
Merged in jed/sizeof (pull request #1706)
Migrate sizeof-related definitions to run-time/non-batch as appropriate
Approved-by: Lisandro Dalcin <dalcinl@gmail.com>
Approved-by: BarryFSmith <bsmith@mcs.anl.gov>
Approved-by: Jed Brown <jed@59a2.org>
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| #
e316c87f
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| 23-May-2019 |
Jed Brown <jed@jedbrown.org> |
MPIU_SIZE_T: define at run-time
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| #
7cdaf61d
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| 23-May-2019 |
Jed Brown <jed@jedbrown.org> |
MPIU_FORTRANADDR: define at run-time
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| #
847f55b8
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| 24-May-2019 |
Lisandro Dalcin <dalcinl@gmail.com> |
Merged in dalcinl/endian (pull request #1698)
Runtime endianness detection
Approved-by: Jed Brown <jed@59a2.org>
Approved-by: BarryFSmith <bsmith@mcs.anl.gov>
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| #
30815ce0
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| 23-May-2019 |
Lisandro Dalcin <dalcinl@gmail.com> |
Add PetscBinaryBigEndian() for runtime detection of endianness
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| #
391e3792
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| 22-May-2019 |
BarryFSmith <bsmith@mcs.anl.gov> |
Merged in barry/check-bad-urls (pull request #1685)
Barry/check bad urls
Approved-by: Patrick Sanan <patrick.sanan@gmail.com>
Approved-by: Junchao Zhang <junchao.zhang@gmail.com>
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| #
a8d69d7b
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| 19-May-2019 |
Barry Smith <bsmith@mcs.anl.gov> |
Fixed out-dated URLS using make checkbadURLS REPLACE=1
One manual fix of https://en.wikipedia.org/wiki/Buckingham_π_theorem since the automatic tool dropped the first _ for some reason
Manual fix of
Fixed out-dated URLS using make checkbadURLS REPLACE=1
One manual fix of https://en.wikipedia.org/wiki/Buckingham_π_theorem since the automatic tool dropped the first _ for some reason
Manual fix of //faq.html since the automatic tool incorrectly replaced /faq.html to //faq.html in some locations
These are largely updates of http to https but have a variety of other website location changes
Once this branch is in master individual developers can run make checkbadURLS and fix URLs related to their projects manually
Commit-type: bug-fix, documentation
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| #
268263ee
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| 18-May-2019 |
Hong Zhang <hongzhang@anl.gov> |
Merged in hongzh/improve-tstrajectory-folder (pull request #1673)
Generate unique folder names for TSTrajectory
Approved-by: BarryFSmith <bsmith@mcs.anl.gov>
Approved-by: Emil Constantinescu <emcon
Merged in hongzh/improve-tstrajectory-folder (pull request #1673)
Generate unique folder names for TSTrajectory
Approved-by: BarryFSmith <bsmith@mcs.anl.gov>
Approved-by: Emil Constantinescu <emconsta@mcs.anl.gov>
Approved-by: Stefano Zampini <stefano.zampini@gmail.com>
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| #
24ac310b
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| 18-May-2019 |
BarryFSmith <bsmith@mcs.anl.gov> |
Merged in barry/log-memory (pull request #1677)
Introduce logging of memory usage to the PETSc event logging infrastructure.
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| #
e3ed9ee7
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| 29-Apr-2019 |
Barry Smith <bsmith@mcs.anl.gov> |
Introduce logging of memory usage to the PETSc event logging infrastructure.
The logging can be turned on and viewed with the options -log_view -log_view_memory
The logging requires the use of the
Introduce logging of memory usage to the PETSc event logging infrastructure.
The logging can be turned on and viewed with the options -log_view -log_view_memory
The logging requires the use of the PETSc malloc so may slow the runs slightly but since it is not
doing error checking of the memory it should not slow down the computations significently.
Four pieces of information about memory are logged and display in four additional columns in the table.
They are documented in the output above the table. Each column provides a particular "view" of the
memory usage in the event and they complement each other.
This should make it much easier for developers focusing on memory usage in their implementations
to understand the usage in the code, where the memory is being utilized, how it scales with problem size and number of processes etc.
Commit-type: feature
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| #
b72fa766
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| 16-May-2019 |
Lisandro Dalcin <dalcinl@gmail.com> |
Merged in dalcinl/fix-io-gmsh (pull request #1660)
Binary I/O And Gmsh DMPlex Reader
Approved-by: Matthew Knepley <knepley@gmail.com>
Approved-by: BarryFSmith <bsmith@mcs.anl.gov>
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| #
8a10d460
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| 13-May-2019 |
Hong Zhang <hongzhang@anl.gov> |
Generate unique folder names for TSTrajectory
- Added PetscMkdtemp()
- Removed -ts_trajectory_dirname in tests
- The changes are also applied to trajmemory.c
Funded-by:
Project: FASTMATH adjoint
Ti
Generate unique folder names for TSTrajectory
- Added PetscMkdtemp()
- Removed -ts_trajectory_dirname in tests
- The changes are also applied to trajmemory.c
Funded-by:
Project: FASTMATH adjoint
Time: 6.5 hours
Reported-by:
Thanks-to:
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| #
9860990e
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| 03-May-2019 |
Lisandro Dalcin <dalcinl@gmail.com> |
Binary I/O: Various fixes and enhancements
* Change PetscBinary[Synchronized]Read() to allow for reading
items up to EOF without erroring
* Fix PetscViewerBinaryRead() to properly return the numbe
Binary I/O: Various fixes and enhancements
* Change PetscBinary[Synchronized]Read() to allow for reading
items up to EOF without erroring
* Fix PetscViewerBinaryRead() to properly return the number of items read
* Fix PetscViewerRead() to prevent infinite loops at EOF
* Various fixes for PetscDataType PETSC_COMPLEX
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| #
7306556b
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| 25-Mar-2019 |
Matthew Knepley <knepley@gmail.com> |
Merged in basvanthof/feature-log-xml-reduction (pull request #1453)
Sys: Extension to the XML logging system
Approved-by: BarryFSmith <bsmith@mcs.anl.gov>
|
| #
36763ca0
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| 18-Mar-2019 |
Bas van 't Hof <bas.vanthof@vortech.nl> |
Sys: Extension to the XML logging system
- Now output of the average of the values (time, flops, messages, message size) over the ranks
- Also report the rank in which the maximum and minimum values
Sys: Extension to the XML logging system
- Now output of the average of the values (time, flops, messages, message size) over the ranks
- Also report the rank in which the maximum and minimum values were found.
- Added MPI_2DOUBLE_PRECISION for MAX/MINLOC reduction
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| #
8000f006
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| 15-Mar-2019 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'master' of bitbucket.org:petsc/petsc
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| #
553225e2
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| 14-Mar-2019 |
Satish Balay <balay@mcs.anl.gov> |
Merge remote-tracking branch 'origin/jczhang/vecscat-in-sf' [PR #1396]
|