PetscViewerHDF5GetGroup: always return absolute path.

Replace PetscViewerHDF5GetAbsolutePath_Internal().
The original implementation is now PetscViewerHDF5GetGroup_Internal()

Merge branch 'haplav/remove-petscviewerhdf5pushgrouprelative' into 'main'

Revert "HDF5: Added PetscViewerHDF5PushGroupRelative()"

See merge request petsc/petsc!5643

Revert "HDF5: Added PetscViewerHDF5PushGroupRelative()"

This reverts commit 1ad4d0e4ff49104e786e3c7e6a975bc001096561.

See !5454

Merge branch 'barry/2022-08-21/clang-format-source' into 'main'

format repository with clang-format

See merge request petsc/petsc!5541

clang-format: convert PETSc sources to comply with clang-format

Merge branch 'knepley/feature-viewer-hdf5-group' into 'main'

HDF5: Added PetscViewerHDF5PushGroupRelative()

See merge request petsc/petsc!5454

HDF5: Added PetscViewerHDF5PushGroupRelative()

Merge branch 'jacobf/2022-02-23/variadic-chkerr' into 'main'

Variadic CHKERRQ()

See merge request petsc/petsc!4889

The great renaming:

- CHKERRQ() -> PetscCall()
- CHKERRV() -> PetscCallVoid()
- CHKERRMPI() -> PetscCallMPI()
- CHKERRABORT() -> PetscCallAbort()
- CHKERRCONTINUE() -> PetscCallContinue()
- CHKERRXX

The great renaming:

- CHKERRQ() -> PetscCall()
- CHKERRV() -> PetscCallVoid()
- CHKERRMPI() -> PetscCallMPI()
- CHKERRABORT() -> PetscCallAbort()
- CHKERRCONTINUE() -> PetscCallContinue()
- CHKERRXX() -> PetscCallThrow()
- CHKERRCXX() -> PetscCallCXX()
- CHKERRCUDA() -> PetscCallCUDA()
- CHKERRCUBLAS() -> PetscCallCUBLAS()
- CHKERRCUSPARSE() -> PetscCallCUSPARSE()
- CHKERRCUSOLVER() -> PetscCallCUSOLVER()
- CHKERRCUFFT() -> PetscCallCUFFT()
- CHKERRCURAND() -> PetscCallCURAND()
- CHKERRHIP() -> PetscCallHIP()
- CHKERRHIPBLAS() -> PetscCallHIPBLAS()
- CHKERRHIPSOLVER() -> PetscCallHIPSOLVER()
- CHKERRQ_CEED() -> PetscCallCEED()
- CHKERR_FORTRAN_VOID_FUNCTION() -> PetscCallFortranVoidFunction()
- CHKERRMKL() -> PetscCallMKL()
- CHKERRMMG() -> PetscCallMMG()
- CHKERRMMG_NONSTANDARD() -> PetscCallMMG_NONSTANDARD()
- CHKERRCGNS() -> PetscCallCGNS()
- CHKERRPTSCOTCH() -> PetscCallPTSCOTCH()
- CHKERRSTR() -> PetscCallSTR()
- CHKERRTC() -> PetscCallTC()

show more ...

chkerr and friends wrapped

Merge branch 'jacobf/2022-01-05/c99' into 'main'

Feature: C99 and C++11

See merge request petsc/petsc!4700

rename PetscAssert() -> PetscCheck() and PetscAssertDebug() -> PetscAssert()

deprecate PETSC_STATIC_INLINE

apply PetscAssertFalse() -> PetscAssert() transformation to headers

add PetscAssert() and PetscAssertFalse()

Merge branch 'knepley/fix-hdf5-timestepping' into 'main'

Viewer+HDF5: Added a default timestepping flag for backwards compatibility

See merge request petsc/petsc!4483

Viewer+HDF5: Added a default timestepping flag for backwards compatibility - Add a default timestepping flag - Added PetscViewerHDF5SetDefaultTimestepping() and PetscViewerHDF5GetDefaultTimestepping(

Viewer+HDF5: Added a default timestepping flag for backwards compatibility - Add a default timestepping flag - Added PetscViewerHDF5SetDefaultTimestepping() and PetscViewerHDF5GetDefaultTimestepping() - Added -viewer_hdf5_default_timestepping

show more ...

Merge branch 'haplav/refactor-hdf5-timesteps' into 'main'

HDF5: Improve timestepping.

Closes #425

See merge request petsc/petsc!3881

HDF5: Improve timestepping.

* add PetscViewerHDF5{Push,Pop,Is}Timestepping to control timestepping mode
* write timestepping attribute for datasets and check it on reading
* fail gracefully if tryin

HDF5: Improve timestepping.

* add PetscViewerHDF5{Push,Pop,Is}Timestepping to control timestepping mode
* write timestepping attribute for datasets and check it on reading
* fail gracefully if trying to read non-timestepped dataset in timestepping mode and vice-versa (fix #425)
* rewrite src/vec/vec/tutorials/ex19.c to improve coverage for timestepping testing

show more ...

Merge branch 'haplav/fix-hdf5-read-attribute-default-value' into 'main'

PetscViewerHDF5ReadAttribute: make defaultValue arg const

See merge request petsc/petsc!3890

PetscViewerHDF5ReadAttribute: make defaultValue arg const

Merge branch 'haplav/feature-hdf5-read-attribute-default-value' into 'main'

PetscViewerHDF5ReadAttribute: Add defaultValue arg.

See merge request petsc/petsc!3877

PetscViewerHDF5ReadAttribute: Add defaultValue arg.

vec/tests/ex48.c:
* add testAttributesDefaultValue() to ex48
* comm be inarg of test functions; fix missing CHKERRQ

vec/tests/ex55.c:
* remove re

PetscViewerHDF5ReadAttribute: Add defaultValue arg.

vec/tests/ex48.c:
* add testAttributesDefaultValue() to ex48
* comm be inarg of test functions; fix missing CHKERRQ

vec/tests/ex55.c:
* remove redundant group push

show more ...

Merge branch 'haplav/hdf5-remove-dead-header' into 'main'

remove dead declaration of PetscViewerHDF5WriteSDS()

See merge request petsc/petsc!3874

remove dead declaration of PetscViewerHDF5WriteSDS()