makefile: fix target "alltests"

Issue introduced in 9ea8719054b272143158b9475e4a9af6b9c47dc0
[make treats make variables and shell variables differently]

[balay@pj01 petsc]$ make alltests
gmake[4]:

makefile: fix target "alltests"

Issue introduced in 9ea8719054b272143158b9475e4a9af6b9c47dc0
[make treats make variables and shell variables differently]

[balay@pj01 petsc]$ make alltests
gmake[4]: PETSC_ARCH=arch-linux-c-debug: No such file or directory
gmake[4]: *** No rule to make target 'PETSC_ARCH=arch-linux-c-debug'.
gmake[4]: Failed to remake makefile 'PETSC_ARCH=arch-linux-c-debug'.
gmake[4]: *** No rule to make target 'test'.

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petscnagupgrade: version of main and related branches should be 'rc0' of the upcoming release.

Merge branch 'barry/2022-03-03/petscmpiexec-check-outofdate' into 'main'

Have petscmpiexec warn if the current executable is out of date

See merge request petsc/petsc!4921

Merge branch 'jczhang/feature-add-kokkos-doc' into 'main'

Add manuals for PETSc/Kokkos APIs and fully implement DMDAVecGetKokkosOffsetView()

See merge request petsc/petsc!4864

petscmpiexec: bash -> sh

petscmpiexec warn if Emacs or Vim has unsafed file edits in source of executable

Could add support for other editors/IDLs

Commit-type: error-checking, feature
/spend 10m

Vec: add manual for VecKokkos

Have petscmpiexec warn if the current executable is out of date

Commit-type: feature
/spend 15m
Reported-by: Jed Brown <jed@jedbrown.org>

allow vermin to be run from anywhere as well

make test from anywhere in the source tree, and expand relative paths in searches

DMPlexCreateTPSMesh: triply-periodic surface meshing

Mesh the surface of the Schwarz P surface with an arbitrary number of
refinements. Thanks to Nikita Simonian and Matthias Messner for
bringing t

DMPlexCreateTPSMesh: triply-periodic surface meshing

Mesh the surface of the Schwarz P surface with an arbitrary number of
refinements. Thanks to Nikita Simonian and Matthias Messner for
bringing these surfaces to my attention and for meshing discussion.

This commit squashes a line of development started in April 2020, with
some merges and conflict resolution with bug fixes and features needed
from upstream.

Add DMPlexCreateGyroidMesh(): will be folded into DMPlexCreateTPSMesh()

https://en.wikipedia.org/wiki/Gyroid

DMPlexCreateTPSMesh: add Face Sets and better output checking

DMPlexCreateTPSMesh: add edge sets for gyroid

DMPlexCreateTPSMesh: fix precision issues

DMPlexCreateTPSMesh: support extrusion to 3D mesh (broken because Face Sets are missing)

DMSetCoordinatesLocal: allow NULL to clear any prior coordinates

DMPlex: add -dm_plex_shape [schwarz_p|gyroid]

Skip distribution before extrusion due to parallel bug #1114.

Co-authored-by: Toby Isaac <tisaac@cc.gatech.edu>

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Enforce PetscCheck() and PetscAssert() usage via checkbadSource

Cook up trivial demo of use of MatSetPreallocationCOO() with finite elements

Clarify MatSetPreallocationCOO() usage in manual page

Kokkos part of example provided by Jed Brown

Commit-type: docs, e

Cook up trivial demo of use of MatSetPreallocationCOO() with finite elements

Clarify MatSetPreallocationCOO() usage in manual page

Kokkos part of example provided by Jed Brown

Commit-type: docs, example
/spend 3h
Reported-by: Fande Kong <fdkong.jd@gmail.com>
Thanks-to: Jed Brown <jed@jedbrown.org>
Thanks-to: Junchao Zhang <jczhang@mcs.anl.gov>

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Add support for --oversubscribe to petscmpiexec

deprecate PETSC_STATIC_INLINE

several checkbadSource fixes:

- SETERRQ() without defined error code check should not flag 'SETERRQ()'
- Space before ) should not flag macros
- should not flag SETERRQ(__VA_ARGS__) as not containin

several checkbadSource fixes:

- SETERRQ() without defined error code check should not flag 'SETERRQ()'
- Space before ) should not flag macros
- should not flag SETERRQ(__VA_ARGS__) as not containing a valid error code

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MatSetPreallocationCOO: use PetscCount for length argument

This is necessary to support assembly even when the vector size and
number of nonzeros is well below 2B. For example, with a scalar problem

MatSetPreallocationCOO: use PetscCount for length argument

This is necessary to support assembly even when the vector size and
number of nonzeros is well below 2B. For example, with a scalar problem
on Q_1 hexes, you have 8*8=64 entries per element and thus hit 2B around
33M elements. This change allows such problems to be solved without
promoting to 64-bit indices everywhere (a storage and bandwidth cost).

PetscCount is a new signed type equivalent to ptrdiff_t, meant for array
indices and sizes that may overflow int32_t even when solving a problem
whose dimension fits in int32_t.

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PetscSizeT: make type available in C for consistency with Fortran

Merge remote-tracking branch 'origin/release'

makefile: put CUDAC's dir in the beginning of PATH

remove petscdefined rule from checkbadSource as it is gives false positives with new macros and is superseded anyways by the poison checks

Merge remote-tracking branch 'origin/release'