Documentation: remove spurious characters

Merge remote-tracking branch 'origin/jczhang/fix-kokkos-test'

Fix some config issues wrt Kokkos

See merge request petsc/petsc!4056

Merge remote-tracking branch 'origin/balay/add-valgrind.h'

valgrind.h: add to petsc repo

See merge request petsc/petsc!4094

Config: delete Kokkos tests with names ex*k

checkBadSource: fix ierr=

checkbadSource: no newline at end of file

valgrind.h: add to petsc at include/private/valgrind

Merge remote-tracking branch 'origin/release'

rebuildtar: do not update/untar docs at the old website

Merge remote-tracking branch 'origin/release'

builddist: '.' vs 'source' appears to require bash

and petsc4py makefile has bash code

tarball: exclude .doctrees

getexlist: fix incorrect 'downcase' usage. This causes the following error:

getexlist in: /home/glci/builds/6tPtAx36/0/petsc/petsc/src/sys/classes/viewer/tutorials
Could not open /home/glci/builds/6

getexlist: fix incorrect 'downcase' usage. This causes the following error:

getexlist in: /home/glci/builds/6tPtAx36/0/petsc/petsc/src/sys/classes/viewer/tutorials
Could not open /home/glci/builds/6tptax36/0/petsc/petsc/doc/_build_classic/docs/manualpages/concepts/viewers.html

Notice '6tPtAx36' vs '6tptax36'

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Merge remote-tracking branch 'origin/release'

createpatch: update download/index.rst

fix doc build in release tarball

MatSetValuesDevice: Cleanup and simplify code, including example

User reported crash of example code. Kernel was passed an ierr that lived in CPU memory

MatSetValuesDevice: do not include private h

MatSetValuesDevice: Cleanup and simplify code, including example

User reported crash of example code. Kernel was passed an ierr that lived in CPU memory

MatSetValuesDevice: do not include private headers from public headers

Feature: MatSetValuesDevice determines automatically from the context (where it is included from) if it is being used from C, CUDA, or Kokkos, PETSC_DEVICE_FUNC_DEC no longer needs to be set before including petscaijdevice.h

Feature: MatSetValuesDevice() now ignores all values outside the global column range.

PetscSplitCSRDataStructure is now a pointer, not a struct, like most PETSc objects, please leave it that way.

Fix all uses of CTABLE that were related to the original MatSetValuesDevice()

Have atomicAdd use Kokkos atomic-add with CPU build when building with Kokkos.

Cuda should now work with --download-openmpi, this is done by updating updateCompilers() to rerun portions of packages/cuda.py after the compilers are reset to use MPI wrappers. This is needed because the resetting of the compilers removes all the compiler flags and packages/cuda.py sets certain values into these flags that was previously lost.

Add MPICXX_INCLUDES, MPICXX_LIBS to fix compile targets for Kokkos examples

'make check' now runs properly for Kokkos test of src/snes/ex3k, fixed bug in the makefile wrt MPI_IS_MPIUNI check

Testing makefile rules: add ex*cu binaries to clean rule

Reported-by: Sam Fagbemi <samkorede24@gmail.com>
Thanks-to: Stefano Zampini <stefano.zampini@gmail.com>
Thanks-to: Mark Adams <mfadams@lbl.gov>

/spend 16h

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Merge branch 'barry/2021-06-08/fix-setterrq-chkerrq' into 'main'

Removed CHKERRQ() that come immediately after SETERRQ(), add test to...

See merge request petsc/petsc!4069

Add sowing doctext -Wargdesc argument to error on missing argument descriptions

Save sowing doctext output to file so it can be checked after all manualpages
are built

Update sowing URl to retreive

Add sowing doctext -Wargdesc argument to error on missing argument descriptions

Save sowing doctext output to file so it can be checked after all manualpages
are built

Update sowing URl to retreive Sowing with additional error checking

Still to do is compare the name of the manual page with the name of the function

Commit-type: error-checking, docs
/spend 35m

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Removed CHKERRQ() that come immediately after SETERRQ(), add test to checkbadSource() to find such constructs

Commit-type: bug-fix, error-checking
\spend 10m
Reported-by: Lisandro Dalcin <dalcinl@gm

Removed CHKERRQ() that come immediately after SETERRQ(), add test to checkbadSource() to find such constructs

Commit-type: bug-fix, error-checking
\spend 10m
Reported-by: Lisandro Dalcin <dalcinl@gmail.com>

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make checkbadSource: avoid error message when used from SLEPc

checkbadSource: remove temporary files if not needed

Update badsource rules

- Zero or more spaces are not allowed for more returning types
- zero spaces not allowed for for|if|while

Merge remote-tracking branch 'origin/release'

checkbadSource now errors on self.gitcommit = branch in packages/xxx.py