Merge branch 'maint'

Merge branch 'scott/ci-artifacts-update' into 'maint'

Improvements to artifacts

See merge request petsc/petsc!2310

Improvements to artifacts

Following the gitlab ref page on artifacts, this is an attempt to
upload the test log files and the gcov tarbal from `make gcov`
Includes update of gcov.py to use optparse

Improvements to artifacts

Following the gitlab ref page on artifacts, this is an attempt to
upload the test log files and the gcov tarbal from `make gcov`
Includes update of gcov.py to use optparse and eliminate os.environ for
getting petsc_dir and petcs_arch.
Also include {configure,make}.log to artifacts.

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Merge branch 'master' into 'master'

Add --download-hpddm

See merge request petsc/petsc!1994

--download-hpddm for PCHPDDM and KSPHPDDM

Merge branch 'scott/test-improve' into 'master'

Various improvements to test harness

See merge request petsc/petsc!2024

Various improvements

1. Test logging now separates tap output and just the error output.
What is streamed is now controlled with the -o flag to the shell
scripts which now has two options curr

Various improvements

1. Test logging now separates tap output and just the error output.
What is streamed is now controlled with the -o flag to the shell
scripts which now has two options currently: 'interactive' and
'err_only'. The V=0 flag and OUTPUT=1 flags to gmakefile.test
turn on the err_only option
The OUTPUT=1 is default for gitlab

2. gmakegentest.py has a (-c,--check-output) option which does nothing
but check if the output files specified by tests are in the output
directories, and return a non-zero error code if they are not there
check_output target is in outer makefile and add `make check_output` to
stage zero tests to prevent running stage 2 and 3 with missing output
files

3. report_tests.py was not giving the correct command to invoke just the
files that failed. This is because it was coded assuming a
particular naming scheme for the tests: an assumption that was both
incorrect, and led to an ill-posed problem for fixing: If a test
label has underscores, it was not easy to fix. The solution was to
change to telling users to globsearch. In fixing, globsearch had to
be generalized to allow for multiple patterns: e.g.,
make -f gmakefile test globsearch='dm_impls_plex_tutorials-ex5_* ts_tutorials-ex11_*'

4. Bug fix for subtests with loop variables
(Reported Jakub Kruzik <jakub.kruzik@vsb.cz> on 6/26/19)

5. This does a minor fix in this utility script which prints out datafiles.

Commit-type: testing-fix, feature

Out check_output rule to outer makefile

Commit-type: feature
Reported-by: gitlab-ci

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Update makefile

Merge branch 'barry/2019-09-01/feature-streams-openmp' [PR #1939]

* barry/2019-09-01/feature-streams-openmp:
Improve streams benchmark usage, now both MPI and OpenMP produce similar output and both

Merge branch 'barry/2019-09-01/feature-streams-openmp' [PR #1939]

* barry/2019-09-01/feature-streams-openmp:
Improve streams benchmark usage, now both MPI and OpenMP produce similar output and both can use process.py

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Improve streams benchmark usage, now both MPI and OpenMP produce similar output and both can use process.py

Added make rules openmpstreams, openmpstreams and changed streams and stream to mpistreams

Improve streams benchmark usage, now both MPI and OpenMP produce similar output and both can use process.py

Added make rules openmpstreams, openmpstreams and changed streams and stream to mpistreams and mpistream

Commit-type: feature, benchmarking

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Merged in barry/with-package-fc-moab-fix (pull request #1788)

Add -with-{hdf5,moab}-fc={true,false} add HDF5 test to make test, fix MOAB handling of zlib

Merged in barry/rm-cmake-legacy (pull request #1714)

Remove legacy and cmake compile systems

Approved-by: BarryFSmith <bsmith@mcs.anl.gov>

check: update hdf5 test to 'clean' before and after the test.
Also switch 'make ex47' 'make ex47.PETSc' to suppress compile log

Add -with-{hdf5,moab}-fc={true,false} add HDF5 test to make test, fix MOAB handling of zlib

Merged in stefano_zampini/update-hypre (pull request #1696)

Update HYPRE to 2.16.0

Approved-by: BarryFSmith <bsmith@mcs.anl.gov>

HYPRE: support when hypre is compiled with --enable-complex

Some of the operations are buggy in HYPRE (i.e. RAP, MatMatMults).
At least, now we compile against a complex hypre
Disable some hypre tes

HYPRE: support when hypre is compiled with --enable-complex

Some of the operations are buggy in HYPRE (i.e. RAP, MatMatMults).
At least, now we compile against a complex hypre
Disable some hypre tests in complex numbers and add a couple of configurations for the nightlies
Also, disabled MatGetRow tests because the previous test was buggy

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Merge branch 'barry/rm-cmake-legacy' of bitbucket.org:petsc/petsc into barry/rm-cmake-legacy

makefile: remove "exercises" target

The exercises target doesn't appear to be functional (or used),
so remove it.

Also remove "pageform.txt" from the "clean-legacy" rule, since this seems to be
the

makefile: remove "exercises" target

The exercises target doesn't appear to be functional (or used),
so remove it.

Also remove "pageform.txt" from the "clean-legacy" rule, since this seems to be
the only place it would be generated.

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revert change with 'shared_install' target and rename to 'print_mesg_after_build'

Merge remote-tracking branch 'origin/psanan/docs-remove-manconcepts' [PR #1733]

Remove legacy and cmake compile systems

- Remove legacy and cmake compile systems from makefiles and config
- Clean out various dead code from makefile and lib/petsc/conf/rules
- Update lib/petsc/co

Remove legacy and cmake compile systems

- Remove legacy and cmake compile systems from makefiles and config
- Clean out various dead code from makefile and lib/petsc/conf/rules
- Update lib/petsc/conf/test to build all examples, not just those beginning with ex, update examples makefiles to remove now unneeded rules
- Deprecated make gnumake, replaced with make libs

Note: retained clean-legacy since it is used by clean in rules

Commit-type: style-fix, feature
Thanks-to: Jed Brown <jed@jedbrown.org> and Satish Balay <balay@mcs.anl.gov>

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Docs: remove manconcepts logic and meta-documentation

Remove creation and processing of manconcepts file (which wasn't used
for anything- see also 0521a30550e7a1a9bc1cab016a3944a14dfd8c82)

This le

Docs: remove manconcepts logic and meta-documentation

Remove creation and processing of manconcepts file (which wasn't used
for anything- see also 0521a30550e7a1a9bc1cab016a3944a14dfd8c82)

This leaves "Concepts:" fields in the man pages, where they were
previously stripped out.

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Merged in jed/makefile.user (pull request #1683)

Add Makefile.user, which uses pkg-config

Approved-by: BarryFSmith <bsmith@mcs.anl.gov>
Approved-by: Satish Balay <balay@mcs.anl.gov>

add test_usermakefile

Merged in jczhang/feature-abi-check (pull request #1675)

Compare ABI/API of two petsc versions

Approved-by: BarryFSmith <bsmith@mcs.anl.gov>