| #
ca3142fd
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| 26-Sep-2014 |
Mark Adams <mfadams@lbl.gov> |
Merge branch 'master' of bitbucket.org:petsc/petsc into mark/ex49-bs
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| #
7bc9226c
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| 19-Sep-2014 |
Barry Smith <bsmith@mcs.anl.gov> |
dmda access to dim not replaced with dm access in MATLAB Engine code
Reported-by: Jose Roman <jroman@dsic.upv.es>
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| #
de2092bf
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| 10-Sep-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMDA: Remove use of PetscCellGeometry in DMDAProjectFunctionLocal()
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| #
dafab42b
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| 22-Aug-2014 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/feature-dm-dimension-handling'
* knepley/feature-dm-dimension-handling:
DM: Fixed DMDASetDim() in examples
Plex: Fix for isoparametric geometry
Plex: Complex fix
TS ex1
Merge branch 'knepley/feature-dm-dimension-handling'
* knepley/feature-dm-dimension-handling:
DM: Fixed DMDASetDim() in examples
Plex: Fix for isoparametric geometry
Plex: Complex fix
TS ex11: Fixed calls to DMSetCoordinateSection()
DM: FIxed DMClone() to copy dimension
Plex+DA: Now cell geometry routine can take a PetscFE in order to evaluate at quadrature points - We evaluate isoparametrically at the quadrature points - Changed DMDAComputeCellGeometry() --> DMDAComputeCellGeometryFEM() - Changed DMPlexComputeCellGeometry() --> DMPlexComputeCellGeometryFEM() - Added DMPlexComputeCellGeometryAffineFEM()
DM: Added a embedding dimension, different from the topological dimension - This can now be set in DMSetCoordinateSection(), or it can be automatically determined
Plex: Fix output for ex4
DM: Added DMGetDimPoints() - This replicates DMPlex/DAGetDepthStratum(), but uses the dimension which people have said is more intuitive
DM: Move dimension up into DM - Both DA and Plex had this and I think it makes sense
Conflicts:
src/dm/impls/plex/plexcreate.c
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| #
8e0841e0
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| 31-Jul-2014 |
Matthew G. Knepley <knepley@gmail.com> |
Plex+DA: Now cell geometry routine can take a PetscFE in order to evaluate at quadrature points
- We evaluate isoparametrically at the quadrature points
- Changed DMDAComputeCellGeometry() --> DMDACo
Plex+DA: Now cell geometry routine can take a PetscFE in order to evaluate at quadrature points
- We evaluate isoparametrically at the quadrature points
- Changed DMDAComputeCellGeometry() --> DMDAComputeCellGeometryFEM()
- Changed DMPlexComputeCellGeometry() --> DMPlexComputeCellGeometryFEM()
- Added DMPlexComputeCellGeometryAffineFEM()
show more ...
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| #
46e270d4
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| 31-Jul-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DM: Added a embedding dimension, different from the topological dimension
- This can now be set in DMSetCoordinateSection(), or it can be automatically determined
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| #
c73cfb54
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| 31-Jul-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DM: Move dimension up into DM
- Both DA and Plex had this and I think it makes sense
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| #
7d31a15c
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| 10-Jun-2014 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'master' of bitbucket.org:petsc/petsc
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| #
9f892594
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| 09-Jun-2014 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/feature-problem-class'
* knepley/feature-problem-class: (40 commits)
PetscDS: Renamed from PetscProblem
ftn-types: fix compilers errors with PetscSection [remove duplicate
Merge branch 'knepley/feature-problem-class'
* knepley/feature-problem-class: (40 commits)
PetscDS: Renamed from PetscProblem
ftn-types: fix compilers errors with PetscSection [remove duplicate code from petscvec*.h90]
PetscSection: Fix Fortran datatypes support
DMPlex: Added quads to cell refiner transform support
DMPlex ex3: Updated to Problem interface
DMDA: Fixed FE projection functions
PetscSection: Fixes for Fortran stubs
DMPlex+TS+Doc: Function docs
PetscSection: Fortran bindings
DMPlex+HDF5: Had revered handedness of transformed periodic coordinates
DMPlex+HDF5: Preserve aspect ratio with remapping of periodic coordinates
DMPlex: Added missing declarations
Sys+DMDT: Added PetscValidFunction()
DMPlex: Fix for DMPlexProjectField()
DMPlex+HDF5: Selectively output fields for viz - Fields with NULL name are ignored
PetscSection: Allow NULL names
DMPlex: Fixes for DMPlexProjectField()
PetscProblem: Added scalar integral (objective function) - Added PetscProblemGet/SetObjective() - Used in PetscFEIntegrate() - Reworked PetscProblemEnlarge_Static()
DM+DT: Adding Fortran bindings
PetscViewer: Added HDF_VIZ format to names
...
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| #
29f8b4da
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| 09-Jun-2014 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/feature-problem-class' into knepley/feature-quad-fas
* knepley/feature-problem-class:
PetscDS: Renamed from PetscProblem
ftn-types: fix compilers errors with PetscSection [
Merge branch 'knepley/feature-problem-class' into knepley/feature-quad-fas
* knepley/feature-problem-class:
PetscDS: Renamed from PetscProblem
ftn-types: fix compilers errors with PetscSection [remove duplicate code from petscvec*.h90]
show more ...
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| #
d56a2bef
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| 09-Jun-2014 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/feature-problem-class' into knepley/fix-fe-gpu
* knepley/feature-problem-class:
PetscDS: Renamed from PetscProblem
ftn-types: fix compilers errors with PetscSection [remove
Merge branch 'knepley/feature-problem-class' into knepley/fix-fe-gpu
* knepley/feature-problem-class:
PetscDS: Renamed from PetscProblem
ftn-types: fix compilers errors with PetscSection [remove duplicate code from petscvec*.h90]
PetscSection: Fix Fortran datatypes support
DMPlex: Added quads to cell refiner transform support
DMPlex ex3: Updated to Problem interface
DMDA: Fixed FE projection functions
show more ...
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| #
2764a2aa
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| 09-Jun-2014 |
Matthew G. Knepley <knepley@gmail.com> |
PetscDS: Renamed from PetscProblem
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| #
0c010903
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| 07-Jun-2014 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/feature-problem-class' into knepley/feature-quad-fas
* knepley/feature-problem-class: (38 commits)
PetscSection: Fix Fortran datatypes support
DMPlex: Added quads to cell r
Merge branch 'knepley/feature-problem-class' into knepley/feature-quad-fas
* knepley/feature-problem-class: (38 commits)
PetscSection: Fix Fortran datatypes support
DMPlex: Added quads to cell refiner transform support
DMPlex ex3: Updated to Problem interface
DMDA: Fixed FE projection functions
PetscSection: Fixes for Fortran stubs
DMPlex+TS+Doc: Function docs
PetscSection: Fortran bindings
DMPlex+HDF5: Had revered handedness of transformed periodic coordinates
DMPlex+HDF5: Preserve aspect ratio with remapping of periodic coordinates
DMPlex: Added missing declarations
Sys+DMDT: Added PetscValidFunction()
DMPlex: Fix for DMPlexProjectField()
DMPlex+HDF5: Selectively output fields for viz - Fields with NULL name are ignored
PetscSection: Allow NULL names
DMPlex: Fixes for DMPlexProjectField()
PetscProblem: Added scalar integral (objective function) - Added PetscProblemGet/SetObjective() - Used in PetscFEIntegrate() - Reworked PetscProblemEnlarge_Static()
DM+DT: Adding Fortran bindings
PetscViewer: Added HDF_VIZ format to names
PetscFE+OpenCL: Make more respectable elasticity
PetscFE+OpenCL: Add flag for printing kernel
...
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| #
b7a4d31f
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| 06-Jun-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMDA: Fixed FE projection functions
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| #
b015001c
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| 28-May-2014 |
Peter Brune <brune@mcs.anl.gov> |
Merge branch 'master' into prbrune/snes-fascontinuation
* master: (855 commits)
fix for moab example had wrong blocksize of mapping
docs:remove src/docs/doxygen/manual [per Barry's instructions]
Merge branch 'master' into prbrune/snes-fascontinuation
* master: (855 commits)
fix for moab example had wrong blocksize of mapping
docs:remove src/docs/doxygen/manual [per Barry's instructions]
gfortran: remove 132 char limit from f90 free-form
SNES: Set up matrix-free *after* copying the user Jacobian to snes->pc
DMPlex-Gmsh: Use trueNumCells when building the coordinate section
Sys: Got guard logic reversed
Sys: The #define guard for PetscMalloc*() must match the one for PetscFree*()
PetscFV: I hate fucking complex
removed ltog scatter from DMDA since functionality can be obtained with gtol scatter and less memory
fix test of DMLocalToGlobalBegin/End and add actual test cases
improve object memory logging for DA, ISLocalToGlobal and ISBLOCK
lower high water mark of constructing parallel scatter by allocating only as much room in svalues as needed
owner in VecScatter construction is the rank, therefor can use PetscMPIInt to hold it do not PetscInt
another reuse of allocated array in 2d/3d DMDA create
improved high water mark of DMDASetups by implementing and using PETSC_USE_POINTER for ISCreateBlock()
PetscFV: Another complex fix
DMPlex+TS: Fixing types
ISIdentity() was wrong for block IS! Indices are NOT scaled by bs
PetscFV: Straighten out complex types
TS ex11: Fix casts and remove unused variable
...
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| #
92c494f3
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| 23-May-2014 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'master' into barry/saws-options
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| #
95ecbf38
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| 18-May-2014 |
Stefano Zampini <stefano.zampini@gmail.com> |
Merge branch 'master' into stefano_zampini/pcbddc-multilevel-improvement
Conflicts:
src/docs/website/documentation/changes/dev.html
src/ksp/ksp/examples/tutorials/ex59.c
src/ksp/pc/impls/bddc/bdd
Merge branch 'master' into stefano_zampini/pcbddc-multilevel-improvement
Conflicts:
src/docs/website/documentation/changes/dev.html
src/ksp/ksp/examples/tutorials/ex59.c
src/ksp/pc/impls/bddc/bddcprivate.c
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| #
b2533dd1
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| 22-Mar-2014 |
Vijay Mahadevan <vijay.m@gmail.com> |
Fixing merge conflicts in dmregall.
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| #
204681ed
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| 19-Mar-2014 |
Vijay Mahadevan <vijay.m@gmail.com> |
Merged petsc/petsc into master
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| #
9c925a2c
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| 18-Mar-2014 |
Shri <abhyshr@mcs.anl.gov> |
Merge branch 'master' into shri/ts-events
Conflicts:
src/ts/interface/ts.c
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| #
5f6acfaf
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| 18-Mar-2014 |
Shri <abhyshr@mcs.anl.gov> |
Merge branch 'master' into shri/feature-dm-circuit
Conflicts:
src/dm/impls/makefile
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| #
653d05a8
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| 18-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/fix-fem-multifield'
* knepley/fix-fem-multifield:
DMDT: Fixed Fortran PetscQuadrature definition
DMPlex ex3: Added Q2 tests - Made DA tests only 2x2 - Changed output format
Merge branch 'knepley/fix-fem-multifield'
* knepley/fix-fem-multifield:
DMDT: Fixed Fortran PetscQuadrature definition
DMPlex ex3: Added Q2 tests - Made DA tests only 2x2 - Changed output format - Quad tests now actually work
DMDA: Added DMDAComputeL2GradientDiff()
PetscSpace: Fixed polynomial derivative evaluation for quads
DMDA: Fix closure operations in 2D
DMPlex: Interpolation cleanup - Remove unused PetscSpace - Fix uninitialized variable
PetscFE: Fix PetscBool handling
SNES ex62: Updated output
DMPlex ex3: Use PetscFECreateDefault() and correct tensor tests
PetscFE: Fix PetscFECreateDefault() - The space should default to tensor on a non-simplex - The quadrature should be tensor Gauss on a non-simplex
DT: Added PetscDTGaussTensorQuadrature()
DT: Added citation for Gloub+Welsch method
PetscSection: Now global section can also be viewed
DMPlex: Allow NULL function for ProjectFunction()
PetscDualSpace: Added doc for PetscDualSpaceApply() - Cherry-picked from df2d8bb
PetscFE: Fixed PetscFECreateDefault() - Setup FE - Minimum quad order - Destroy quad after setting
PetscFE: PetscFECreateDefault() now takes a number of components and a reference cell type - Cherry-picked from a255314
PetscFE: Added PetscFECreateDefault() - Cherry-picked from 8919f5a
PetscFE: Allow lowest order cell Lagrange dual basis functions
DMPlex: Fix preallocation with cell variables - I had an incorrect loop optimization
Conflicts:
src/dm/impls/plex/plexpreallocate.c
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| #
1d763ceb
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| 17-Mar-2014 |
Peter Brune <brune@mcs.anl.gov> |
Merge branch 'master' into prbrune/matcoloring-greedy
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| #
23d86601
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| 15-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMDA: Added DMDAComputeL2GradientDiff()
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| #
2646d903
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| 12-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'master' into knepley/fix-fem-multifield
* master:
tests: move ex151 out of complex tests to avoid compile errors on windows
DM: Fixed pointer comparison
Microsoft C++ compiler ne
Merge branch 'master' into knepley/fix-fem-multifield
* master:
tests: move ex151 out of complex tests to avoid compile errors on windows
DM: Fixed pointer comparison
Microsoft C++ compiler needs extra care with complex numbers and casting
DMPlex: C++ has fucking namespaces, use them assholes
Field has 3 components therefor need to initialize three components, Microsoft C compiler demands it
DMPlex ex3: Added interpolation test - Only works for 2D simplices - Shows the restriction only gets constants right - Other small cleanup
DMPlex ex3: Change to interpolated meshes by default
DMPlex: Fix interpolation of multicomponent fields
DM: Fix reference counting in DMSetField()
DMPlex: Fix interpolation scaling
DMPlex: Fix allocation in DMPlexMatSetClosureRefined()
DMDA: Fixed signature of DMDACreateSection()
When configuring with MPIUni remove any MPI includes in the $PETSC_DIR/PETSC_ARCH/include directory that may have been put there by earlier ./configure runs.
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