Remove braces from one-liners w/o PetscCall()

Merge branch 'jolivet/fix-style-one-liners' into 'main'

Remove braces from one-liners

See merge request petsc/petsc!5557

Remove braces from one-liners

Merge branch 'barry/2022-08-21/clang-format-source' into 'main'

format repository with clang-format

See merge request petsc/petsc!5541

clang-format: convert PETSc sources to comply with clang-format

Merge branch 'barry/2022-08-13/fix-man-include' into 'main'

Fix up manual pages in include/ including adding tick marks

See merge request petsc/petsc!5528

Fix up manual pages in include/ including adding tick marks

Commit-type: documentation
/spend 4h

Merge branch 'ahamilton/fix-DMClone_Network' into 'main'

Fix DMClone_Network

See merge request petsc/petsc!5362

Changed DMClone_Network to only clone the topological part of the network. Adjusted DMDestroy_Network to compensate. Before this DMClone was broken, and essentially just giving you a shared pointer.

Changed DMClone_Network to only clone the topological part of the network. Adjusted DMDestroy_Network to compensate. Before this DMClone was broken, and essentially just giving you a shared pointer. You could use the clone to mess with the values of the components of the original for example. This is a step in getting DMClone to behave similarly for DMNetwork as other DMs.

Added DMNetworkFinalizeComponents() to setup the internal data structures for the components and dofs on a network. Necessary to work with cloned networks

Added basic example to test cloning of a network

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Merge branch 'gbetrie/fix-dmnetworkcomponentsetup-updated' into 'main'

Fix bug in DMNetWorkComponentSetUp() that did incorrect deep copy of the component data

See merge request petsc/petsc!5425

Merge branch 'gbetrie/dmnetwork-add-profile' into 'main'

Add profiling events for memory intensive routines

See merge request petsc/petsc!5097

Add profiling events for memory intensive routines

Fix bug in DMNetWorkComponentSetUp() that did incorrect deep copy of the componnt data

It can now free all the original component data immediately after copying it since the bug is removed

Merge branch 'barry/2022-06-13/make-one-line-if-call' into 'main'

Change if () { PetscCall() } three liner to one liner

See merge request petsc/petsc!5344

Change if () { PetscCall() } three liner and friends to one liners

for i in `git ls-files | grep "\.[ch]$"` ; do sed 's?\$?ZZZ?g' $i | tr '\n' '$' | sed 's?\([ ]*\)if (\([-;,.\*+=a-z0-9A-Z_>]*\)) {\

Change if () { PetscCall() } three liner and friends to one liners

for i in `git ls-files | grep "\.[ch]$"` ; do sed 's?\$?ZZZ?g' $i | tr '\n' '$' | sed 's?\([ ]*\)if (\([-;,.\*+=a-z0-9A-Z_>]*\)) {\$[ ]*PetscCall(\([- ._+=a-z0-9A-Z>*,()]*);\)\$[ ]*}\$?\1if (\2) PetscCall(\3$?g' | tr '$' '\n' | sed 's?ZZZ?$?g' > $i.joe ; mv $i.joe $i ; done

for i in `git ls-files | grep "\.[hc]$"` ; do sed 's?\$?ZZZ?g' $i | tr '\n' '$' | sed 's?\([ }else]*\)if (\([-;,.\*+=a-z0-9A-Z_>]*\)) {\$[ ]*PetscCall(\([- ._+=a-z0-9A-Z>*,()]*);\)\$\([ ]*\)} \([- ._+=a-z0-9A-Z>*,()]*);\)\$?\1if (\2) PetscCall(\3$\4\5$?g' | tr '$' '\n' | sed 's?ZZZ?$?g' > $i.joe ; mv $i.joe $i ; done

Yes, really ugly but Barry still cannot master awk

Commit-type: housekeeping

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Merge branch 'ahamilton/feature-ImproveIndexCreationForDMNetworkLayoutSetup' into 'main'

Modify DMNetworkLayoutSetup to use MPI_Scan instead of MPI_Allgather

See merge request petsc/petsc!5348

Modified DMNetoworkLayoutSetup to use MPI_Scan instead of MPI_Allgather for computing global edge indices.

Merge remote-tracking branch 'origin/release'

Merge branch 'ahamilton/fix-DMNetworkLayout' into 'release'

Fixed Tiny Bug in DMNetworkLayoutSetUp

See merge request petsc/petsc!5341

Fixed Small bug in DMNetworkLayoutSetup. Technically this didn't actually affect anything as every header had the same default maxcomps of 1, but better to fix.

Merge remote-tracking branch 'origin/release'

Merge branch 'jose/codespell-fixes' into 'release'

A few codespell fixes

See merge request petsc/petsc!5259

A few codespell fixes

Merge remote-tracking branch 'origin/release'

Merge branch 'barry/2022-05-04/tiny-doc-dmnetwork' into 'release'

Small but important doc for DMNetwork

See merge request petsc/petsc!5219