| #
86fd59d5
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| 02-Apr-2014 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/fix-dm-vec-blocksize'
* knepley/fix-dm-vec-blocksize:
DMPlex: Fix variable init
DMPlex: Fix coordinate blocksize in uniform refinement
Vec: Fix blocksize determination wi
Merge branch 'knepley/fix-dm-vec-blocksize'
* knepley/fix-dm-vec-blocksize:
DMPlex: Fix variable init
DMPlex: Fix coordinate blocksize in uniform refinement
Vec: Fix blocksize determination with VecGetSubVector()
DM: Handle empty vectors correctly for blocksize determination
show more ...
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| #
a1b00d24
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| 01-Apr-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Force a serial load in DMLoad_HDF5(), after which we call DMPlexDistribute()
- Eventually we would load into a naive partition
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| #
1d803361
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| 31-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
Merge remote-tracking branch 'origin/knepley/fix-dm-vec-blocksize' into knepley/feature-plex-hdf5-parallel-load
* origin/knepley/fix-dm-vec-blocksize:
DMPlex: Fix variable init
DMPlex: Fix coord
Merge remote-tracking branch 'origin/knepley/fix-dm-vec-blocksize' into knepley/feature-plex-hdf5-parallel-load
* origin/knepley/fix-dm-vec-blocksize:
DMPlex: Fix variable init
DMPlex: Fix coordinate blocksize in uniform refinement
Vec: Fix blocksize determination with VecGetSubVector()
DM: Handle empty vectors correctly for blocksize determination
show more ...
|
| #
93a5981a
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| 31-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Cells in the boundary marker should not be interpreted as constraints
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| #
8c85052e
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| 31-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Fix variable init
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| #
3351dd3d
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| 30-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: DMPlexInsertBoundaryValues() --> DMPlexInsertBoundaryValuesFEM(), and added an FVM version
- The FVM version depends on precalculated geometry which needs to be pulled into the library
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| #
156e0bae
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| 30-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/feature-plex-hdf5'
* knepley/feature-plex-hdf5:
DMPlex: Fixed #ifdef for HDF5
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| #
7e42fee7
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| 30-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Fixed #ifdef for HDF5
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| #
b0288186
|
| 30-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/feature-plex-hdf5'
* knepley/feature-plex-hdf5: (63 commits)
DMPlex ex2: Added an example that checks a mesh
DMPlex: #ifdef support functions for HDF5
TS: Fix output sequ
Merge branch 'knepley/feature-plex-hdf5'
* knepley/feature-plex-hdf5: (63 commits)
DMPlex ex2: Added an example that checks a mesh
DMPlex: #ifdef support functions for HDF5
TS: Fix output sequence
DMPlex: Check for HDF5 attributes before writing them
DMPlex: Label with timestep number since we do not have times
Viewer+HDF5: Added PetscViewerHDF5HasAttribute()
TS: Set output sequence for timesteps
DMPlex: Handle output sequences - Added static to some functions
DM: Add idea of an output sequence - Added DMGet/SetOutputSequenceNumber() - Added doc for outputDM
REVERT TS: Timestep gets set into DMTS
DMPlex: Fix up HDF5 segregation
DMPlex: Replace MAXPATHLEN with PETSC_MAX_PATH_LEN
DMPlex: Fix HDF5 timestep handling
DMPlex: Set correct block size on HDF5 field vectors
TS: Timestep gets set into DMTS
DMTS: Added timestep
DMPlex: Fix output of fields - Corrected name - Fixed vector type
DMPlex: Return errors from HDF5 function
DMPlex+Viewer: Now output separate fields for viz - Added the PETSC_VIEWER_HDF5_VIZ format for creating viz fields - Added field type determination
Sys+HDF5: Added PetscDataType string and HDF5 support for it
...
Conflicts:
config/BuildSystem/config/packages/__init__.py
src/ts/interface/ts.c
show more ...
|
| #
160341eb
|
| 30-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: #ifdef support functions for HDF5
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| #
32720fa8
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| 30-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Now DMCreateSection() calls DMPlexLabelAddCells()
- This is necessary for FEM boundary conditions, but we do not want it for FVM so we need some control divergence here soon
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| #
211e18df
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| 30-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/feature-plex-hdf5' into knepley/feature-plex-bc
* knepley/feature-plex-hdf5: (61 commits)
TS: Fix output sequence
DMPlex: Check for HDF5 attributes before writing them
DM
Merge branch 'knepley/feature-plex-hdf5' into knepley/feature-plex-bc
* knepley/feature-plex-hdf5: (61 commits)
TS: Fix output sequence
DMPlex: Check for HDF5 attributes before writing them
DMPlex: Label with timestep number since we do not have times
Viewer+HDF5: Added PetscViewerHDF5HasAttribute()
TS: Set output sequence for timesteps
DMPlex: Handle output sequences - Added static to some functions
DM: Add idea of an output sequence - Added DMGet/SetOutputSequenceNumber() - Added doc for outputDM
REVERT TS: Timestep gets set into DMTS
DMPlex: Fix up HDF5 segregation
DMPlex: Replace MAXPATHLEN with PETSC_MAX_PATH_LEN
DMPlex: Fix HDF5 timestep handling
DMPlex: Set correct block size on HDF5 field vectors
TS: Timestep gets set into DMTS
DMTS: Added timestep
DMPlex: Fix output of fields - Corrected name - Fixed vector type
DMPlex: Return errors from HDF5 function
DMPlex+Viewer: Now output separate fields for viz - Added the PETSC_VIEWER_HDF5_VIZ format for creating viz fields - Added field type determination
Sys+HDF5: Added PetscDataType string and HDF5 support for it
IS: Fix compiler warning
IS: Forgot to protect HDF5
...
Conflicts:
config/BuildSystem/config/packages/__init__.py
src/ts/interface/ts.c
show more ...
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| #
0164434f
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| 30-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/feature-section-reorder'
* knepley/feature-section-reorder:
DMPlex: Fixed F90 binding for DMPlexCreateSection()
DMPlex exf90: Forgot Fortran change
DMPlex: Added permutat
Merge branch 'knepley/feature-section-reorder'
* knepley/feature-section-reorder:
DMPlex: Fixed F90 binding for DMPlexCreateSection()
DMPlex exf90: Forgot Fortran change
DMPlex: Added permutation argument to DMPlexCreateSection() - Need it because it calls PetscSectionSetUp()
PetscSection: Added an optional permutation for the chart - Removed the unnecessary atlasLayout - This permutation will allow people to segregate ghost unknowns at the end of their numbering, and also to get around the stratification of point numbering in Plex
show more ...
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| #
b19d005e
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| 30-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/feature-section-reorder' into knepley/feature-plex-bc
* knepley/feature-section-reorder:
DMPlex: Fixed F90 binding for DMPlexCreateSection()
DMPlex exf90: Forgot Fortran ch
Merge branch 'knepley/feature-section-reorder' into knepley/feature-plex-bc
* knepley/feature-section-reorder:
DMPlex: Fixed F90 binding for DMPlexCreateSection()
DMPlex exf90: Forgot Fortran change
DMPlex: Added permutation argument to DMPlexCreateSection() - Need it because it calls PetscSectionSetUp()
PetscSection: Added an optional permutation for the chart - Removed the unnecessary atlasLayout - This permutation will allow people to segregate ghost unknowns at the end of their numbering, and also to get around the stratification of point numbering in Plex
show more ...
|
| #
361cb455
|
| 29-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Check for HDF5 attributes before writing them
|
| #
d2573dda
|
| 29-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Label with timestep number since we do not have times
|
| #
b5862548
|
| 29-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Handle output sequences
- Added static to some functions
|
| #
b136c2c9
|
| 29-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Fix up HDF5 segregation
|
| #
efef14af
|
| 28-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Replace MAXPATHLEN with PETSC_MAX_PATH_LEN
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| #
4271a5b7
|
| 28-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Fix HDF5 timestep handling
|
| #
dce6b827
|
| 28-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Set correct block size on HDF5 field vectors
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| #
e00f9ccc
|
| 28-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Fix output of fields
- Corrected name
- Fixed vector type
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| #
287b6d67
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| 28-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Return errors from HDF5 function
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| #
ffe0aed0
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| 28-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex+Viewer: Now output separate fields for viz
- Added the PETSC_VIEWER_HDF5_VIZ format for creating viz fields
- Added field type determination
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| #
f8f126e8
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| 27-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Added permutation argument to DMPlexCreateSection()
- Need it because it calls PetscSectionSetUp()
|