Merge branch 'jacobf/2023-08-09/linter-detect-static-function-candidates' into 'main'

Linter detect possible static functions

See merge request petsc/petsc!6796

Delete unused code

Merge branch 'jacobf/2023-08-08/lint-apply-dm' into 'main'

Manual DM Linter Fixes

See merge request petsc/petsc!6792

Manual linter fixes: dm

Merge branch 'main-patch-4a63' into 'main'

Improved comment in plex.c

See merge request petsc/petsc!6785

Update file plex.c

Merge branch 'tisaac/feature-log-handler' into 'main'

Deglobalize logging into PetscLogHandler and PetscLogState

See merge request petsc/petsc!6709

Profiling: Switch logging over to the new PetscLogHandler infrastructure

- Move data structures only needed by the default logger now (Action,
Object) to logdefault.c

- Create petsclogdeprecated.

Profiling: Switch logging over to the new PetscLogHandler infrastructure

- Move data structures only needed by the default logger now (Action,
Object) to logdefault.c

- Create petsclogdeprecated.h and petsc/private/logimpldeprecated.h
for publicly visible symbols that are now deprecated. Yes,
lots of symbols in petsc/private/logimpl.h were not only visible
but had docstrings.

- The macros PetscLogEventBegin(), PetscLogEventEnd(),
PetscLogEventSync(), PetscLogObjectCreate(), and
PetscLogObjectDestroy() now looks through the log handlers
in PetscLogHandlers, sees if they have they appropriate
callbacks (Exposed in PetscLogHandlerHot), and calls them.
Up to 4 log handlers can run simultaneously.

- All queries about the registered things now go through
petsc_log_state.

- Output functions dispatch to the appropriate PetscLogHandler

- There is no need for xmllogevent.c, xmlviewer.c, eventlog.c,
classlog.c, and stagelog.c anymore. Some orphaned functions
(PetscLogSetThreshold(), PetscLogEventSetDof(),
PetscLogEventSetError(), PetscASend(), PetscARecv(), PetscAReduce())

- PetscFEOpenCLLogResidual() did some intrusive things related
to the old logging infrastruture: the private header
for the default log handler is now imported into feopencl.c
so that it can do equivalent things with the new infrastructure.

- PetscLogPauseCurrentEvent_Internal() is replaced with
PetscLogEventsPause()

Deprecated symbols include:

- All functions related to PetscStageLog and the resizable array structs
that it contained.

- The legacy EventBegin()/EventEnd() callbacks.

- PetscLogAllBegin(), which actually reported less information than
PetscLogDefaultBegin() because it was not kept up-to-date with
regards to GPU profiling.

show more ...

Profiling: Improve !defined(PETSC_USE_LOG) #defines

- If we cast macro arguments to void, we can avoid unused errors that have
forced lots of conditionally included code like this:

```c
#if def

Profiling: Improve !defined(PETSC_USE_LOG) #defines

- If we cast macro arguments to void, we can avoid unused errors that have
forced lots of conditionally included code like this:

```c
#if defined(PETSC_USE_LOG)
PetscLogEvent event;
#endif
```

- Having global counters like petsc_TotalFlops externed event
if !PetscDefined(USE_LOG) helps to remove a lot of needless
`#ifdef`s around code that can instead be placed in
`if (PetscDefined(USE_LOG)) {}` blocks.

show more ...

Merge branch 'tisaac/feature-type-generic-petsc-valid-pointer' into 'main'

Implement a type generic PetscValidPointer

See merge request petsc/petsc!6693

Rename PetscValidPointer -> PetscAssertPointer

Deploy new PetscValidPointer, remove PetscValidXXXPointer

Merge branch 'stefanozampini/plex' into 'main'

small fixes from asan undefined behaviour

See merge request petsc/petsc!6722

DMPLEX: fixes for address sanitizer

Merge branch 'jacobf/2023-06-30/enable-doc-lint' into 'main'

Enable docs linting

See merge request petsc/petsc!6667

Lint apply: dm

Merge branch 'jolivet/fix-warnings' into 'main'

Fix warnings

See merge request petsc/petsc!6649

Fix warnings

Merge branch 'stefanozampini/dmplexinterp' into 'main'

speed up DMPlexInterpolate

See merge request petsc/petsc!6563

Plex: Fix DMPlexGetHeightStratum() for ephemeral meshes

Plex: Small fix

Plex: Replace DMPlexGetGhostCellStratum() with DMPlexGetCellTypeStratum()
- Also fix DMPlexTransform version

DMPlexGetTransitiveClosure: implement fastpath

DMPlex: add DMPlexUninterp event

This operation is often expensive (even dominating total cost) so needs
to be profiled.

DMPlex: add fastpath to set/get celltype