DMPLEX: remove flush of VTK viewer

Merge branch 'jrwrigh/plex_sfc_21bit_index' into 'main'

plex sfc: Expand ZCode encoding to 21 bits per index

See merge request petsc/petsc!7899

Merge branch 'knepley/feature-plex-plot' into 'main'

Plex+Viewer: PETSCVIEWERPYTHON and PyVista support for DMPLEX

See merge request petsc/petsc!7884

Plex+Viewer: Added Python and PyVista viewers
- Enable viewer filename interface for Python viewer
- Add -viewer_python_filename to set the output filename
- Add -dm_plex_transform_active_values to e

Plex+Viewer: Added Python and PyVista viewers
- Enable viewer filename interface for Python viewer
- Add -viewer_python_filename to set the output filename
- Add -dm_plex_transform_active_values to explicitly set values in the label
- Add -dm_plex_option_phases to control sequencing of setup from the command line

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Merge branch 'knepley/fix-plex-hdf5-fields' into 'main'

Plex+HDF5: Restore previous behavior for version 1.1.0 output

See merge request petsc/petsc!7934

Plex+HDF5: Restore previous behavior for version 1.1.0 output
- CHREST needs segmented fields on meshes with different cell types

plex sfc: Add log event for box mesh creation

Merge branch 'knepley/feature-plex-hdf5-opt' into 'main'

IS+HDF5: Add run-length compression to IS I/O

See merge request petsc/petsc!7862

IS+HDF5: Add run-length compression for arithmetic progressions to IS I/O
- Add DMPlexGetDepthStratumGlobalSize()
- Add name and compression info to HDF5ReadCtx
- Add compression argument to PetscVie

IS+HDF5: Add run-length compression for arithmetic progressions to IS I/O
- Add DMPlexGetDepthStratumGlobalSize()
- Add name and compression info to HDF5ReadCtx
- Add compression argument to PetscViewerHDF5ReadSizes_Private() and PetscViewerHDF5Load_Internal()
- Gather compressed info to all procs when loading
- Set name for local coordinates
- Add logging
- Add -is_view_compress to turn off compression
- Add -dm_plex_view_coordinate_section to just output coordinates
- Add -dm_plex_view_labels to turn off label output
- Support loading coordinates without section

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Merge branch 'jolivet/clang-format-19' into 'main'

clang-format-19

See merge request petsc/petsc!7644

Remove unneeded parentheses

Merge branch 'jrwrigh/cgns_parallel_io' into 'main'

CGNS: Add parallel Plex building, VecLoad, and more

See merge request petsc/petsc!7826

Merge branch 'barry/2024-09-18/fix-some-clang-tidy' into 'main'

Fix some code issues exposed by make clang-tidy

See merge request petsc/petsc!7845

Fix some code issues exposed by make clang-tidy

cgns: Add parallel Plex read, VecLoad, etc.

- Parallel Plex building with `-dm_plex_cgns_parallel`
- Parallel solution reading via `VecLoad()`
- Added `PetscViewerCGNSOpen()`
- Added `PetscViewerCGN

cgns: Add parallel Plex read, VecLoad, etc.

- Parallel Plex building with `-dm_plex_cgns_parallel`
- Parallel solution reading via `VecLoad()`
- Added `PetscViewerCGNSOpen()`
- Added `PetscViewerCGNSGetSolution{Time,Name}()`,
`PetscViewerCGNSSetSolutionIndex()`

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Merge branch 'stefanozampini/fix-plex-hdf5' into 'main'

Fix plex hdf5

See merge request petsc/petsc!7860

VecView_Plex_Local_HDF5_Internal: only one field type per vector

It makes no sense to visualize high-order stuff otherwise

Merge branch 'barry/2024-09-02/rebased-fix-conversion-warnings' into 'main'

Compiler finds (and forbid) casts from higher precision integers to lower

See merge request petsc/petsc!7806

Fix MPIU_* routines to always return MPI error codes and thus be usable with PetscCallMPI()

Introduce MPIU_Count to be used when MPI_Count is not available

Change from deprecated PETSC_MAX/MIN_INT to PETSC_INT_MAX/MIN

Commit-type: i.e. error-checking, optimization, bug-fix, portability-fix, testing-fix, style-fix, feature, documentation, example
Funded

Change from deprecated PETSC_MAX/MIN_INT to PETSC_INT_MAX/MIN

Commit-type: i.e. error-checking, optimization, bug-fix, portability-fix, testing-fix, style-fix, feature, documentation, example
Funded-by:
Project:
Time: hours
Reported-by:
Thanks-to:
Development Tools: Vim, Emacs, Eclipse

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Add to CI compilers flags '-Wconversion', '-Wno-sign-conversion', '-Wno-float-conversion', '-Wno-implicit-float-conversion']

Also fix the code to repository to compile cleanly with these flags in th

Add to CI compilers flags '-Wconversion', '-Wno-sign-conversion', '-Wno-float-conversion', '-Wno-implicit-float-conversion']

Also fix the code to repository to compile cleanly with these flags in the CI

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Viwering PetscSection displays dof as dim in the ASCII files, fix to dof

Merge branch 'knepley/feature-1d-affine-map' into 'main'

Fixes for submesh handling

See merge request petsc/petsc!7823

DM+DS: Create FE with degree bounds
- Add degree bounds to DMCopyFields(), DMCopyDS(), PetscDSCopy(), and PetscDSSelectDiscretizations()
- Add PetscFELimitDegree()

Merge branch 'barry/2024-09-08/rm-empty-comments' into 'main'

Remove empty comments from the source, that is /* */

See merge request petsc/petsc!7815