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199a4585
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| 14-Mar-2018 |
Lisandro Dalcin <dalcinl@gmail.com> |
Merged in dalcinl/fix-dmplex-vecview (pull request #884)
DMPlex: Fix VecView
Approved-by: Karl Rupp <me@karlrupp.net>
Approved-by: BarryFSmith <bsmith@mcs.anl.gov>
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| #
e9cb465c
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| 01-Mar-2018 |
Matthew G. Knepley <knepley@gmail.com> |
Plex: Fixes for ASCII viewer
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| #
aeadca18
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| 26-Feb-2018 |
Toby Isaac <tisaac@cc.gatech.edu> |
DMPlex: rename newly created label
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4a3e9fdb
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| 21-Feb-2018 |
Toby Isaac <tisaac@cc.gatech.edu> |
DMPlexSNES: caching of new geometry constructs
The old paradigm cached one geometry object for all cells or all faces,
an approach that doesn't take into account that different quadratures
may requi
DMPlexSNES: caching of new geometry constructs
The old paradigm cached one geometry object for all cells or all faces,
an approach that doesn't take into account that different quadratures
may require different geometry objects. Now the geometry object
is composed with the index set over which the geometry ranges, and the composition
string include the object id of the quadrature. To take advantage of
this caching, we have to be careful not to reconstruct index sets on the
fly when they are known a priori. In particular, the hybrid bounds
have been encapsulated as a label, which makes them accessible as ISs.
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| #
684b87d9
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| 06-Mar-2018 |
Lisandro Dalcin <dalcinl@gmail.com> |
DMPlex: Fix VecView
* Fix VTK viewer requiring exclusive ownership of the vector.
* Add fast path for HDF5 with global vectors and essential BCs.
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c8dd51e9
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| 05-Mar-2018 |
Barry Smith <bsmith@mcs.anl.gov> |
Revert "Bug in viewing multiple vectors with VecView_Plex_Local_Draw() each overwrote the previous"
This reverts commit 29c95491dc1710544f73d25ac98dc64225f2d7e1.
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632d4749
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| 05-Mar-2018 |
Barry Smith <bsmith@mcs.anl.gov> |
Revert "Follow fix for commit 29c95491dc1710544f73d25ac98dc64225f2d7e1 since object is already referenced now"
This reverts commit 7762cb5a66803d54d0f43ea8d2d5b956639305c8.
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6783bb9d
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| 05-Mar-2018 |
Karl Rupp <me@karlrupp.net> |
Merge branch 'pr871/acroucher/acroucher/dmplex-hdf5-vecview/master'
* pr871/acroucher/acroucher/dmplex-hdf5-vecview/master:
Two fixes to prevent HDF5 DMPlex VecView crashing when one process has no
Merge branch 'pr871/acroucher/acroucher/dmplex-hdf5-vecview/master'
* pr871/acroucher/acroucher/dmplex-hdf5-vecview/master:
Two fixes to prevent HDF5 DMPlex VecView crashing when one process has no cells.
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| #
57ff148e
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| 04-Mar-2018 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'barry/refactor-petscstrncat'
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a126751e
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| 03-Mar-2018 |
Barry Smith <bsmith@mcs.anl.gov> |
Change PetscStrncat() to PetscStrlcat() to match BSD API where l represents total length
Update many uses of PetscStrcpy() and PetscStrcat() to the safer PetscStrncpy() and PetscStrlcat()
Commit-ty
Change PetscStrncat() to PetscStrlcat() to match BSD API where l represents total length
Update many uses of PetscStrcpy() and PetscStrcat() to the safer PetscStrncpy() and PetscStrlcat()
Commit-type: style-fix, feature
Thanks-to: Jed Brown
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7762cb5a
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| 03-Mar-2018 |
Barry Smith <bsmith@mcs.anl.gov> |
Follow fix for commit 29c95491dc1710544f73d25ac98dc64225f2d7e1 since object is already referenced now
when passed in do not need to reference it again.
Commit-type: bug-fix
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92955057
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| 03-Mar-2018 |
Barry Smith <bsmith@mcs.anl.gov> |
Follow fix for commit 29c95491dc1710544f73d25ac98dc64225f2d7e1 since object is already referenced now
when passed in do not need to reference it again.
Commit-type: bug-fix
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f94b4a02
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| 01-Mar-2018 |
Blaise Bourdin <bourdin@lsu.edu> |
DM: make subDM inherit the GlobaltoNatural flag and SF
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3e70f1d9
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| 28-Feb-2018 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'maint'
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29c95491
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| 28-Feb-2018 |
Barry Smith <bsmith@mcs.anl.gov> |
Bug in viewing multiple vectors with VecView_Plex_Local_Draw() each overwrote the previous
Commit-type: bug-fix
Reported-by: Danyang Su <danyang.su@gmail.com>
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a99a26bc
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| 22-Feb-2018 |
Adrian Croucher <a.croucher@auckland.ac.nz> |
Ensure field type is consistent across all processes
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| #
f19dbd58
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| 15-Feb-2018 |
Toby Isaac <tisaac@cc.gatech.edu> |
Added DMGetCoordinateField()
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| #
49d377d8
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| 02-Jan-2018 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'barry/test-harness-snes-examples-tutorials' into barry/all-new-test-harness-branches
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7cd3fc30
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| 02-Jan-2018 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'barry/tao-to-new-test-harness' into barry/all-new-test-harness-branches
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4faa7a62
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| 02-Jan-2018 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'barry/move-to-new-test-harness' into barry/all-new-test-harness-branches
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9b58da5a
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| 02-Jan-2018 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'barry/vec-to-test-harness' into barry/all-new-test-harness-branches
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35e5de05
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| 02-Jan-2018 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'jed/tests-cxx-linker' into barry/more-to-new-test-harness
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358f824e
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| 26-Dec-2017 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'dalcinl/fix-single-warnings'
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db67cc71
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| 20-Dec-2017 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'pr1/haplav/fix-DMPlexGetCellFields/master'
* pr1/haplav/fix-DMPlexGetCellFields/master:
Plex ex25: Fix leaks
small ex25 fixes based on PR review
fix DMPlexRestoreCellFields for c
Merge branch 'pr1/haplav/fix-DMPlexGetCellFields/master'
* pr1/haplav/fix-DMPlexGetCellFields/master:
Plex ex25: Fix leaks
small ex25 fixes based on PR review
fix DMPlexRestoreCellFields for cStart=cEnd
fix DMCreateDefaultSection_Plex for 0 fields
DMPlex test 25 created
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50967f52
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| 18-Dec-2017 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/feature-plex-exodus-update'
* knepley/feature-plex-exodus-update: (22 commits)
this test requires exodus to be built with pnetcdf
Plex ex26: Fix leak and bad merge
Plex+E
Merge branch 'knepley/feature-plex-exodus-update'
* knepley/feature-plex-exodus-update: (22 commits)
this test requires exodus to be built with pnetcdf
Plex ex26: Fix leak and bad merge
Plex+ExodusII: Make all ExodusII calls into PetscStackCall
test: use newer cmake version for exodus
pnetcdf: correctly use flibs
exodus: update pnetcdf dependency - and make netcdf optional on pnetcdf And update exodus tests to use --download-pnetcdf
c89: fix
dmplex/exodus: fix build errors with exodus disabled
Plex: Guard ExodusII use
Plex ex26: Test 18 now working
Plex+ExodusII: Fixed hex27 bug
Plex ex26: Check in meshes
Plex ex26: Update to check ExodusII input and output
Plex+ExodusII: Added ExodusII viewer functions
Plex: For NtoG, we need to zero the output entries
Plex: After creating GtoN map, set useNatural for parallel DM
Plex: DMPlexVecRestoreClosure() now sets the input array to NULL
Plex+Doc: Improve documentation of Closure functions
BuildSystem: Bump ExodusII version
BuildSystem: added pnetcdf required for parallel access to non netcdf4/hdf5 exodus files
...
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