Merge branch 'knepley/feature-viewer-partial-read'

* knepley/feature-viewer-partial-read:
Viewer: Fixed initialization
TS: Updated example to new interface
Plex: Fix compiler warning
Viewer:

Merge branch 'knepley/feature-viewer-partial-read'

* knepley/feature-viewer-partial-read:
Viewer: Fixed initialization
TS: Updated example to new interface
Plex: Fix compiler warning
Viewer: Now ViewerRead() takes an extra argument to return the number of items read - An error is thrown for insufficient data unless the extra argument is non-NULL
Viewer: Fixes for new Read interface - Fixed example - Fixed Fortran 90 binding - Fixed type
Builder: Allow a local dictionary for run parameters
Viewer: PetscViewerRead() should return the number of items actually read - This also applies to all its implementations

show more ...

Viewer: Now ViewerRead() takes an extra argument to return the number of items read
- An error is thrown for insufficient data unless the extra argument is non-NULL

Viewer: Fixes for new Read interface
- Fixed example
- Fixed Fortran 90 binding
- Fixed type

Merge branch 'master' into tisaac/dmforest

If we're going to start developing on this again, the recent changes to the
location of configuration files will make it annoying to switch to and from
thi

Merge branch 'master' into tisaac/dmforest

If we're going to start developing on this again, the recent changes to the
location of configuration files will make it annoying to switch to and from
this branch. Matt's and my fixes in DMPlex will also be relevant.

* master: (1557 commits)
MatLoad_MPIDense() always allocated array space even if it was previously provided
Clarified lumping options for PCFieldSplitSchurPreType SELFP.
fixed up PetscInfo in GAMG
TSErrorWeightedNorm[2|Infinity]: API changes
MatLoad_SeqDense() always allocated new space for the data even if the user already provided it
Fixed DMCompositeGetAccessArray() to support readonly vectors
Fix obviously-wrong aspects of documentation on SNESVINEWTONRSLS and SNESVINEWTONSSLS.
fixed example to compile - demonstrates a bug
var name 'len' was F90 key word
For user provided Jacobian functions they should always assembly into the second matrix, the one from which the preconditioner is built because the first may be used as matrix-free with -snes_mf_operator
Suggest --with-64-bit-indices if users mistakenly use --with-64bit-indices
Fix configure logging of integer size.
missing underscore in #define of vecgetarrayread translation of fortran stub for VECGETARRAYREAD
updated test output files to reflect differences introduced previously in PCView output
-ksp_type preonly does not support -ksp_monitor_short so remove from test line to prevent extranious warning output
missing CHKERRQ; and ugly double declaration of ierr
Plex ex3: For want of a semicolon, the kingdom was lost
MatSetValuesMPISBAIJ will now print correct global indices when error generated due to new nonzero location
completed basic use of MatSetValuesBlocked_SeqBAIJ_Inlined() by MatSetValuesBlocked_MPIBAIJ() to allow proper global indices being printed when error generated by new nonzero locations.
Added inline version of MatSetValuesBlocked_SeqBAIJ() to be used by MatSetValuesBlocked_MPIBAIJ() to print error message for nonzero block with global indices
...

show more ...

Viewer: PetscViewerRead() should return the number of items actually read
- This also applies to all its implementations

Merge branch 'master' into shri/ts-is-for-differential-variables

Conflicts:
include/petsc-private/tsimpl.h
src/ts/impls/eimex/eimex.c
src/ts/interface/ts.c

Merge branch 'master' into jed/chem
Note merging a branch with good stuff in it for a year and a half is insane!

Conflicts:
src/ts/examples/tutorials/makefile
src/ts/interface/ts.c

fix: compile warning

ftp://ftp.mcs.anl.gov/pub/petsc/nightlylogs/archive/2015/03/02/filtered-make_master_arch-freebsd-pkgs-opt_wii.log
/home/balay/petsc.clone/src/dm/impls/plex/plexfluent.c:54: warn

fix: compile warning

ftp://ftp.mcs.anl.gov/pub/petsc/nightlylogs/archive/2015/03/02/filtered-make_master_arch-freebsd-pkgs-opt_wii.log
/home/balay/petsc.clone/src/dm/impls/plex/plexfluent.c:54: warning: 'fdes' may be used uninitialized in this function

show more ...

Merge branch 'master' into barry/clean-gamg

Need updates to KSPCHEBYSHEV since I will be adding to them

Merge branch 'mlange/feature-plex-fluent'

* mlange/feature-plex-fluent:
Plex+Fluent: Fixed cast
Plex+Fluent: Fixed PetscBool handling
Plex ex1: Add Fluent reader tests for binary and pseudo-mi

Merge branch 'mlange/feature-plex-fluent'

* mlange/feature-plex-fluent:
Plex+Fluent: Fixed cast
Plex+Fluent: Fixed PetscBool handling
Plex ex1: Add Fluent reader tests for binary and pseudo-mixed sections
Plex-Fluent: Use a single-level meet to mark interior faces
Plex-Fluent: Face-type 5 also requires dynamic derivation of data size
Plex-Fluent: Add custom Fortran wrapper for DMPlexCreateFluentFromFile
Plex ex1: Add sequential and parallel tests for Fluent .cas reader
Plex-Fluent: Add support for binary sections in Fluent reader
Plex-Fluent: Mark faces with provided zoneIDs
Plex-Fluent: Dynamically derive data size for "mixed" sections
Plex-Fluent: Add coordinates to the generated Plex
Plex-Fluent: Build Plex topology from face connectivity
Plex-Fluent: Add skeleton reader for ANSYS Fluent mesh files

show more ...

Plex+Fluent: Fixed cast

Plex+Fluent: Fixed PetscBool handling

Plex-Fluent: Use a single-level meet to mark interior faces

Plex-Fluent: Face-type 5 also requires dynamic derivation of data size

Plex-Fluent: Add support for binary sections in Fluent reader

Adds a utility function for bulk reading section data. Since
PetscBinaryRead() errors when reading past EOF we always use an
ascii reade

Plex-Fluent: Add support for binary sections in Fluent reader

Adds a utility function for bulk reading section data. Since
PetscBinaryRead() errors when reading past EOF we always use an
ascii reader to detect sections. Then, when we encounter a binary
data section, we extract the underlying file descriptor and use
PetscBinaryRead() directly.

Plex-Fluent: Add _ReadValues utility

show more ...

Plex-Fluent: Mark faces with provided zoneIDs

Plex-Fluent: Dynamically derive data size for "mixed" sections

Fluent provides header types for mixed topology sections. Some mesh
generators abuse this by always declaring a mixed topology. In this

Plex-Fluent: Dynamically derive data size for "mixed" sections

Fluent provides header types for mixed topology sections. Some mesh
generators abuse this by always declaring a mixed topology. In this case
we need to parse the size of each facet entry set and defer memory
allocation until we see the first entry of each section.

show more ...

Plex-Fluent: Add coordinates to the generated Plex

Plex-Fluent: Build Plex topology from face connectivity

Fluent mesh files provide the connectivity of faces with vertices
and cells in the face section. We untangle this to generate the
more traditi

Plex-Fluent: Build Plex topology from face connectivity

Fluent mesh files provide the connectivity of faces with vertices
and cells in the face section. We untangle this to generate the
more traditional cell-vertex list to build the Plex topology.

show more ...

Plex-Fluent: Add skeleton reader for ANSYS Fluent mesh files

The reader currently only parses section headers and stores meta-data in
a custom struct.