Merge branch 'jacobf/2022-01-05/c99' into 'main'

Feature: C99 and C++11

See merge request petsc/petsc!4700

rename PetscAssert() -> PetscCheck() and PetscAssertDebug() -> PetscAssert()

add PetscAssert() and PetscAssertFalse()

Merge branch 'ksagiyam/dmplex_path_change' into 'main'

Ksagiyam/dmplex path change

Closes #956 and #896

See merge request petsc/petsc!4441

plexhdf5: Introduce storage versioning and version 2.0.0;

* introduce DMPlexStorageVersion x.y.z
* if no version specified in file => 1.0.0
[original version before the project - that in petsc rel

plexhdf5: Introduce storage versioning and version 2.0.0;

* introduce DMPlexStorageVersion x.y.z
* if no version specified in file => 1.0.0
[original version before the project - that in petsc release 3.16.0]
* check version in both file and option -dm_plex_view_hdf5_storage_version
* version 2.0.0 changes paths to topology, labels, coordinates
* support both versions 1.0.0 and 2.0.0 for writing
* use sizeof in PetscSNPrintf() calls

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plex: DMPlex needs to be named before calling DM{View, Load}()

DMPlexCreateFromFile() takes mesh name as argument

Merge branch 'jolivet/fix-some-missing-chkerr' into 'main'

Some missing CHKERR[Q|MPI]

See merge request petsc/petsc!4190

Some missing CHKERR[Q|MPI]

Merge branch 'jolivet/fix-incorrect-chkerrq' into 'master'

CHKERRQ() -> CHKERRMPI()

See merge request petsc/petsc!3637

CHKERRQ() -> CHKERRMPI()

Merge branch 'ksagiyam/plex_hdf5_tests' into 'master'

plex hdf5: replicate plex/tutorials/ex5 in petsc4py

See merge request petsc/petsc!3445

plex_hdf5: add framework to test load on N / save on M

Merge branch 'haplav/plex-xdmf-tutorial' into 'master'

plex xdmf tutorial

See merge request petsc/petsc!3398

add new plex/tutorials/ex5.c

Merge branch 'knepley/fix-plex-ex-partitioner' into 'master'

Knepley/fix plex ex partitioner

See merge request petsc/petsc!3256

Plex ex5: Fix partitioner

Merge branch 'barry/2020-08-16/fix-source-formatting' into 'master'

Turn on checkbadSource test to generate an error when found; fix all source code that causes errors

See merge request petsc/petsc

Merge branch 'barry/2020-08-16/fix-source-formatting' into 'master'

Turn on checkbadSource test to generate an error when found; fix all source code that causes errors

See merge request petsc/petsc!3064

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Turn on checkbadSource test to generate an error when found; fix all source code that causes errors

Commit-type: portability-fix, testing-fix, style-fix, feature, maintainability
/spend 1.5h

Merge remote-tracking branch 'origin/barry/2020-05-30/trivial-sizeof-fixes'

Updated the use of sizeof() when possible instead of using hardwired sizes for...

See merge request petsc/petsc!2827

Updated the use of sizeof() when possible instead of using hardwired sizes for functions whose string arguments
need sizes. In particular done for PetscOptionsGetString(), PetscOptionsString(), and a

Updated the use of sizeof() when possible instead of using hardwired sizes for functions whose string arguments
need sizes. In particular done for PetscOptionsGetString(), PetscOptionsString(), and a few other utilities

Commit-type: style-fix

Development Tools: Vim, Emacs, Eclipse

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Merge branch 'jed/promote-examples-tests-tutorials' [petsc/petsc!2610]

* jed/promote-examples-tests-tutorials:
Promote examples/{tests,tutorials}/ to {tests,tutorials}/

Promote examples/{tests,tutorials}/ to {tests,tutorials}/

This shortens paths and improves consistency between test target names
and paths to the source and output files. Most of the work was
compl

Promote examples/{tests,tutorials}/ to {tests,tutorials}/

This shortens paths and improves consistency between test target names
and paths to the source and output files. Most of the work was
completed by this script, followed by mild cleanup of nonconforming
cases.

for makefile in `git ls-files 'src/*makefile'`; do
if rg -q 'DIRS.*\bexamples\b' $makefile; then
base=$(dirname $makefile)
dirs=$(cd $base/examples && ls -d tests tutorials 2>/dev/null | xargs echo)
perl -pi -e "s#^(DIRS.*)\bexamples\b#\1${dirs}#" $makefile
git rm $base/examples/makefile
for t in $dirs; do
git mv $base/examples/$t $base/
perl -pi -e "s#^(LOCDIR[[:space:]]*=).*#\1 $base/$t/#" $base/$t
done
fi
done

git grep -l -E -z 'examples/(tutorials|tests)' | xargs -0 perl -pi -e 's#examples/(tutorials|tests)#\1#g'
git checkout @ \
src/docs/website/documentation/changes/ \
src/benchmarks/results/

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