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81c2c0ad
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| 29-Jul-2015 |
Hong Zhang <hzhang@mcs.anl.gov> |
Merge branch 'master' of bitbucket.org:petsc/petsc
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| #
a504addb
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| 29-Jul-2015 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'maint'
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| #
224748a4
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| 28-Jul-2015 |
Barry Smith <bsmith@mcs.anl.gov> |
update manual page for DMView
Reported-by: Dave May <dave.mayhem23@gmail.com>
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| #
10e4d9b0
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| 28-Jul-2015 |
Hong Zhang <hzhang@mcs.anl.gov> |
Merge branch 'master' of bitbucket.org:petsc/petsc
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| #
3e8c22cd
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| 22-Jul-2015 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'master' into knepley/feature-snes-deflation
* master: (206 commits)
Bib: Added ref
fix the output file for the ts example ex20adj
Bugfix: setting post-step function in ztsf.c
f
Merge branch 'master' into knepley/feature-snes-deflation
* master: (206 commits)
Bib: Added ref
fix the output file for the ts example ex20adj
Bugfix: setting post-step function in ztsf.c
fix makefile format error with 'all-legacy'
doc: handle missing dev.html in a release tarball
doc: add in petscistypes.h to doc sourcefile list
Increase patchlevel to 3.6.1
update some example output files
Doc+Vec: Fixed VecSetValuesBlocked() Reported by: Shao-Ching Huang <huangsc@gmail.com>
clarify that PETSc's "thread safe" code only works with OpenMP
allow adjoint integration over split time intervals
DT: Goddman it. Why are people stepping on my commits
Bib: Added ref
fix the bug in the endpoint version of discrete adjoint theta and correct the affected example outputs
SNES: Added SNESQN types to Fortran Reported-by: Chris Bradley <c.bradley@auckland.ac.nz>
fix: buggy change in 33da457b864643cfcac2768e47197c286471a5a4
updated petscthreads.html with information on thread per object model
fix for ex56
removed the dead links to threads.html
send petsc repository messages to Karl no longer from his mcs address
...
Conflicts:
config/builder.py
src/dm/impls/plex/examples/tests/ex3.c
src/dm/impls/plex/examples/tests/makefile
src/dm/impls/plex/makefile
show more ...
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| #
123dfe75
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| 22-Jul-2015 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'master' into knepley/feature-plex-point-location
* master: (202 commits)
Bib: Added ref
fix makefile format error with 'all-legacy'
Increase patchlevel to 3.6.1
update some exa
Merge branch 'master' into knepley/feature-plex-point-location
* master: (202 commits)
Bib: Added ref
fix makefile format error with 'all-legacy'
Increase patchlevel to 3.6.1
update some example output files
Doc+Vec: Fixed VecSetValuesBlocked() Reported by: Shao-Ching Huang <huangsc@gmail.com>
clarify that PETSc's "thread safe" code only works with OpenMP
allow adjoint integration over split time intervals
DT: Goddman it. Why are people stepping on my commits
Bib: Added ref
fix the bug in the endpoint version of discrete adjoint theta and correct the affected example outputs
SNES: Added SNESQN types to Fortran Reported-by: Chris Bradley <c.bradley@auckland.ac.nz>
fix: buggy change in 33da457b864643cfcac2768e47197c286471a5a4
updated petscthreads.html with information on thread per object model
fix for ex56
removed the dead links to threads.html
send petsc repository messages to Karl no longer from his mcs address
Plex: Fix for all the hidebound morons living with c89. Good luck doing computational science in the 80s!
DT: Fix tanh-sinh - Removed wrong var
SNES: Added SNESQN types to Fortran Reported-by: Chris Bradley <c.bradley@auckland.ac.nz>
Bib: More refs
...
Conflicts:
config/builder.py
show more ...
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| #
cea54e9d
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| 22-Jul-2015 |
Patrick Farrell <patrick.farrell@maths.ox.ac.uk> |
Profile DMCreateInterpolation (nontrivial cost for nonnested meshes)
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0b0615df
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| 21-Jul-2015 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'mesgarnejad/feature-plex-globaltonatural'
* mesgarnejad/feature-plex-globaltonatural:
Plex ex15: This requires HDF5
Plex ex15: Fixed variable type
Plex: Fixed variable init
Ple
Merge branch 'mesgarnejad/feature-plex-globaltonatural'
* mesgarnejad/feature-plex-globaltonatural:
Plex ex15: This requires HDF5
Plex ex15: Fixed variable type
Plex: Fixed variable init
Plex ex15: Added test for reading and writing HDF5 in native format
Vec: Straighten out defines for VECOP
DM: Reminder to handle g2n in DMCreateSubDM()
Plex ex15: One test of g2n working
Plex: Fixed global to natural mapping creation
Plex: When creating g2n map, must use parallel DM
PetscSF: Corrected bug in PetscSFCreateInverseSF() for sparse leaves - Have to index over entire leaf space
PetscSection: PetscSectionCreateGlobalSection() now allows the user to keep local offsets - This is useful is all you want is to filter out the constrained points
Plex: Create the global to natural mapping during distribution if the flag is set
Plex: Added viewing in native format using the global to natural mapping
Plex: Added global to natural ordering support - The natural ordering is the one you have before distribution - Added DMPlexCreateGlobalToNaturalSF() - Added DMPlexGlobalToNaturalBegin/End() - Added DMPlexNaturaToGloballBegin/End()
SF: Added PetscSFCreateEmbeddedLeafSF() - This name sucks, but it subsets on leaves instead of roots
DM: Added an SF for the global to local mapping and a flag to enable its construction - Added DMGet/SetUseNatural() - Should hook this up to DMDA
SF: Added Fortran binding for SFView()
DM: Automatic Fortran binding should work for DMCreateSubDM()
SF: Added PetscSFCompose()
SF: Added PetscSFCreateFromZero()
show more ...
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9f063b17
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| 20-Jul-2015 |
Hong Zhang <hzhang@mcs.anl.gov> |
Merge branch 'master' of bitbucket.org:petsc/petsc
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d9805387
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| 16-Jul-2015 |
Matthew G. Knepley <knepley@gmail.com> |
Doc+DM: Make clear that VecSetDM() is not the same as DMCreateGlobalVector()
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15b58121
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| 11-Jul-2015 |
Matthew G. Knepley <knepley@gmail.com> |
PetscSection: PetscSectionCreateGlobalSection() now allows the user to keep local offsets
- This is useful is all you want is to filter out the constrained points
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47a35634
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| 13-Jun-2015 |
Patrick Farrell <patrick.farrell@maths.ox.ac.uk> |
Events for DMCoarsen and DMLocatePoints
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| #
0ba5da2d
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| 05-Jun-2015 |
Fande Kong <fdkong.jd@gmail.com> |
Merge remote-tracking branch 'petsc/master' into matpartitioning-hierach
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| #
62ec5fd8
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| 05-Jun-2015 |
Fande Kong <fdkong.jd@gmail.com> |
Merge remote-tracking branch 'petsc/master' into mat-increaseoverlap
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| #
8e4ac7ea
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| 02-Jun-2015 |
Matthew G. Knepley <knepley@gmail.com> |
DM: Added an SF for the global to local mapping and a flag to enable its construction
- Added DMGet/SetUseNatural()
- Should hook this up to DMDA
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| #
564cec59
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| 02-Jun-2015 |
Matthew G. Knepley <knepley@gmail.com> |
DM: Automatic Fortran binding should work for DMCreateSubDM()
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| #
f99d2097
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| 29-May-2015 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'master' into knepley/feature-snes-deflation
* master: (32 commits)
MatGetSubmatrix() could hang when some processes thought the entire matrix as being selected and others did not.
Merge branch 'master' into knepley/feature-snes-deflation
* master: (32 commits)
MatGetSubmatrix() could hang when some processes thought the entire matrix as being selected and others did not.
PetscOptionsStringToScalar() and hence PetscOptionsScalarArray() did not work correctly for complex numbers with negative imaginary part
Have SNESCOMPOSITE honour -snes_max_fail for the number of inner solver failures it will tolerate.
fiat: add fallback url
added Stefano and Lisandro to PETSc authors list updated PETSc version number to 3.6 and year of publication to 2015 in the users manuals
deeper cleanup of matrix when the type is reset
need to call KSPSetFromOptions() after KSPSetOperators() so that command line null space is attached to correct matrix updated example output for null space not attached to KSP
Doc: Acknowledge Patrick
bugs in example that should never have gotten into next bug in code calling VecGetArray() on read only vector
doc: seperate -> separate
configure: help - prevent from printing duplcate sections - all PACAKGENAMEs should be CAPS
remove C99 code from example update output from example
updated list of PETSc enum objects that bfort will treat as native for generating Fortran stubs
-help would print the various -xxx_type values on multiple lines making a | grep -ksp_type (for example) not list all the possible options
fix memory leak as reported by the nightly tests
print help message for PetscOptionsGetViewer() the message is rather long
removed dead code about PETSc web server
removed unneeded custom XXXViewFromOptions() functions and updated to use PetscObject as second argument calling sequence
changed second argument of PetscObjectViewFromOptions() to PetscObject and all routines that use this routine
bugfix as reported by PETSc blame digest (next) 2015-05-25
...
show more ...
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| #
a9de7100
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| 29-May-2015 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'master' of bitbucket.org:petsc/petsc
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| #
2b13432e
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| 29-May-2015 |
Hong Zhang <hzhang@mcs.anl.gov> |
Merge branch 'master' of bitbucket.org:petsc/petsc
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| #
e507be0b
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| 29-May-2015 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/fix-dm-default-section-null'
* knepley/fix-dm-default-section-null:
DM: Allow the default section to be set to NULL
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| #
1dc95e22
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| 28-May-2015 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'barry/fix-petscobjectviewfromoptions'
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| #
685405a1
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| 26-May-2015 |
Barry Smith <bsmith@mcs.anl.gov> |
changed second argument of PetscObjectViewFromOptions() to PetscObject and all routines that use this routine
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| #
b4927efa
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| 26-May-2015 |
Fande Kong <fdkong.jd@gmail.com> |
Merged petsc/petsc into master
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| #
71acca78
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| 21-May-2015 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/feature-plex-bc'
* knepley/feature-plex-bc:
TS: Take out unnecessary declaration
XDMF: Allow missing time dimension
MatSchur: Better check for missing D matrix
TAO ex1:
Merge branch 'knepley/feature-plex-bc'
* knepley/feature-plex-bc:
TS: Take out unnecessary declaration
XDMF: Allow missing time dimension
MatSchur: Better check for missing D matrix
TAO ex1: Updated to new Plex interface
Plex: Fixed bug for FV BCs in DMCreateSection_Plex()
Plex+TS: FIxed DMPlexTSCheckFromOptions()
Plex: Changed the signature of pointwise input functions - Now the spatial dimension and number of fields is passed in
Plex: Fixed bugs with DMPlexCreateSection() - F90 declaration - Do not constrain more than the dog
DM: Can view the global section using -global_section_view
Plex: Now DMPlexCreateSection() also takes the constrained components
Plex: Now BC take constrained field components as well - Changed DMPlexAdd/GetBoundary() - Can use -bc_<name>_comp <nums> to override
Plex: Now -dm_plex_separate_marker works correctly in DMPlexCreateSquareBoundary()
DMLabel: Added DMLabelInsertIS()
SNES: Added DMSNESCheckFromOptions() - Should simplify examples
show more ...
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| #
bc4733e7
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| 20-May-2015 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/feature-plex-bc' into knepley/solkx
* knepley/feature-plex-bc:
TS: Take out unnecessary declaration
XDMF: Allow missing time dimension
MatSchur: Better check for missing
Merge branch 'knepley/feature-plex-bc' into knepley/solkx
* knepley/feature-plex-bc:
TS: Take out unnecessary declaration
XDMF: Allow missing time dimension
MatSchur: Better check for missing D matrix
TAO ex1: Updated to new Plex interface
Plex: Fixed bug for FV BCs in DMCreateSection_Plex()
Plex+TS: FIxed DMPlexTSCheckFromOptions()
Plex: Changed the signature of pointwise input functions - Now the spatial dimension and number of fields is passed in
Plex: Fixed bugs with DMPlexCreateSection() - F90 declaration - Do not constrain more than the dog
DM: Can view the global section using -global_section_view
Plex: Now DMPlexCreateSection() also takes the constrained components
Plex: Now BC take constrained field components as well - Changed DMPlexAdd/GetBoundary() - Can use -bc_<name>_comp <nums> to override
Plex: Now -dm_plex_separate_marker works correctly in DMPlexCreateSquareBoundary()
DMLabel: Added DMLabelInsertIS()
SNES: Added DMSNESCheckFromOptions() - Should simplify examples
show more ...
|