Merge branch 'jose/release/docstring' into 'release'

Docstring fixes

See merge request petsc/petsc!7425

Docstring fixes

Merge branch 'jrwrigh/multiple_isoperiodic' into 'main'

Plex Isoperiodic: Allow multiple periodic directions

See merge request petsc/petsc!7305

Plex Isoperiodic: Update coordinate for multiple face_sfs

This could probably be made more efficient by consolidating the multiple
`affine` and `affine_to_local` into a single `VecScatter*` routine.

Plex Isoperiodic: Update coordinate for multiple face_sfs

This could probably be made more efficient by consolidating the multiple
`affine` and `affine_to_local` into a single `VecScatter*` routine. But
I'm not sure how exactly to do that and do not believe the performance
penalty here should be significant.

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Merge branch 'barry/2024-03-13/docs-dmcreatedomaindecompositionandfriendsandrelations' into 'main'

Improve clarity and correctness of DMCreateDomainDecomposition() and related routines manual pages

Merge branch 'barry/2024-03-13/docs-dmcreatedomaindecompositionandfriendsandrelations' into 'main'

Improve clarity and correctness of DMCreateDomainDecomposition() and related routines manual pages

See merge request petsc/petsc!7364

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Improve clarity and correctness of DMCreateDomainDecomposition() and related routines manual pages

Merge branch 'tisaac/fix-p4est-global-coordinates' into 'main'

DMForest: add failing test supplied by Berend van Wachem

See merge request petsc/petsc!7028

Merge branch 'stefanozampini/firedrake-1' into 'main'

Updates for Firedrake: first batch

See merge request petsc/petsc!7358

DMSet{Local|Global]Section: need to recreate the sectionSF

DMLocalToGlobalHook_Constraints: only access constraints if mode is ADD_VALUES

Merge branch 'jolivet/clang-format-18' into 'main'

clang-format version 18

See merge request petsc/petsc!6902

CI: update to clang-format-18

Remove carriage return in Petsc(Assert|Check)()

git grep -l -E "Petsc(Assert|Check)\(.*\\\n\"[,)]" | xargs sed -r -i'' 's#Petsc(Assert|Check)\((.*)\\n"([,)])#Petsc\1\(\2\"\3#g'

Suggested-by: Stefan

Remove carriage return in Petsc(Assert|Check)()

git grep -l -E "Petsc(Assert|Check)\(.*\\\n\"[,)]" | xargs sed -r -i'' 's#Petsc(Assert|Check)\((.*)\\n"([,)])#Petsc\1\(\2\"\3#g'

Suggested-by: Stefano Zampini

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Remove multiple parentheses and extra semicolon

git grep -l -E "\(\([a-zA-Z0-9_]+\)\(\*[a-zA-Z0-9_]+\)[, )]" | xargs sed -r -i'' 's#\(\(([a-zA-Z0-9_]+)\)\(\*([a-zA-Z0-9_]+)\)([, )])#\(\(\1\)\*\2\3#g

Remove multiple parentheses and extra semicolon

git grep -l -E "\(\([a-zA-Z0-9_]+\)\(\*[a-zA-Z0-9_]+\)[, )]" | xargs sed -r -i'' 's#\(\(([a-zA-Z0-9_]+)\)\(\*([a-zA-Z0-9_]+)\)([, )])#\(\(\1\)\*\2\3#g'
git grep -l -E "Petsc(.)*\(\(\*[a-zA-Z0-9_]*\)," | xargs sed -r -i'' 's#Petsc([a-zA-Z0-9_]*)\(\(\*([a-zA-Z0-9_]*)\), #Petsc\1(*\2, #g'
git grep -l -E "([\!\&\~\*\(]|\)\)|\([^,\*\(]+\**\))\(([a-zA-Z0-9_]+((\.|->)[a-zA-Z0-9_]+|\[[a-zA-Z0-9_ \%\+\*\-]+\])+)\)" | xargs sed -r -i'' 's#([\!\&\~\*\(]|\)\)|\([^,\*\(]+\**\))\(([a-zA-Z0-9_]+((\.|->)[a-zA-Z0-9_]+|\[[a-zA-Z0-9_ \%\+\*\-]+\])+)\)#\1\2#g'

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checkbadSource: rules for PetscFunctionBegin and derivatives

Merge branch 'stefanozampini/clear-dm-vectors' into 'main'

DM: DMSet{Local|Global}Section must clear the internal vectors

See merge request petsc/petsc!7314

DM: DMSet{Local|Global}Section must clear internal vectors and sectionSF

Reported-by: <yuanxi@advancesoft.jp>

Merge branch 'knepley/fix-plex-io-section-perm' into 'main'

Plex: Flexible creation of section permutations

See merge request petsc/petsc!7258

Plex: Allow global section to ignore the local section permutation on output

DM: Clone must copy seciton reordering info

Plex: Flexible creation of section permutations
- Add createsectionpermutation to DM ops
- Change DMPlexReorderDefaultFlag to DMReorderDefaultFlag
- Move DMReorderDefaultFlag to the correct header

A

Plex: Flexible creation of section permutations
- Add createsectionpermutation to DM ops
- Change DMPlexReorderDefaultFlag to DMReorderDefaultFlag
- Move DMReorderDefaultFlag to the correct header

Apply 1 suggestion(s) to 1 file(s)

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Merge branch 'stefanozampini/snes-ex11' into 'main'

New simplified SNES + PLEX example

See merge request petsc/petsc!7235

DMPLEX: handle material parameters in subdomain callbacks

Add DMClearAuxiliaryVec

Merge branch 'jolivet/petsctrytypemethod' into 'main'

Use Petsc[Use|Try]TypeMethod when possible

See merge request petsc/petsc!7213

DM: protect type callbacks with PetscUseTypeMethod