| #
c73cfb54
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| 31-Jul-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DM: Move dimension up into DM
- Both DA and Plex had this and I think it makes sense
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| #
501695b7
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| 31-Jul-2014 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'maint'
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| #
df3898ee
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| 31-Jul-2014 |
Barry Smith <bsmith@mcs.anl.gov> |
with with -> with the the -> the
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| #
c83e3748
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| 25-Jun-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DM: Removed code to uncompose nullspace/pmat
- This was to prevent reference cycles, which happen with MatNullSpace using DM Vecs, but its fragile
- My current solution is to strip out DM from Vecs i
DM: Removed code to uncompose nullspace/pmat
- This was to prevent reference cycles, which happen with MatNullSpace using DM Vecs, but its fragile
- My current solution is to strip out DM from Vecs in a MatNullSpace, but that sucks too. Need a better solution
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| #
4aeb217f
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| 15-Jun-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DM: Fix bad cast
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| #
315c6686
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| 13-Jun-2014 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/feature-quad-fas'
* knepley/feature-quad-fas:
DMPlex: Proper preallocation for interpolators
DMPlex: Added events for interpolator and injector construction - Fixed event n
Merge branch 'knepley/feature-quad-fas'
* knepley/feature-quad-fas:
DMPlex: Proper preallocation for interpolators
DMPlex: Added events for interpolator and injector construction - Fixed event names
DM: Added sequence value for each number - Added DMOutputSequenceLoad() - Changed DMGet/SetOutputSequenceNumber() signature
Sys: Made a simple two-int hash - Someone should remove that other IJ crap
PetscDS: Renamed from PetscProblem
DMPlex: Fixed allocation
DMPlex: Support for injection from more complicated discretizations - Added DMPlexMatGetClosureIndicesRefined() - Added DMPlexComputeInjectorFEM() - Fixed check
PetscFE: Use in-cell test specific to cell shape
DMPlex: Added CellRefinerInCellTest_Internal()
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| #
cdb7a50d
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| 11-Jun-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DM: Added sequence value for each number
- Added DMOutputSequenceLoad()
- Changed DMGet/SetOutputSequenceNumber() signature
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| #
7d31a15c
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| 10-Jun-2014 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'master' of bitbucket.org:petsc/petsc
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| #
9f892594
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| 09-Jun-2014 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/feature-problem-class'
* knepley/feature-problem-class: (40 commits)
PetscDS: Renamed from PetscProblem
ftn-types: fix compilers errors with PetscSection [remove duplicate
Merge branch 'knepley/feature-problem-class'
* knepley/feature-problem-class: (40 commits)
PetscDS: Renamed from PetscProblem
ftn-types: fix compilers errors with PetscSection [remove duplicate code from petscvec*.h90]
PetscSection: Fix Fortran datatypes support
DMPlex: Added quads to cell refiner transform support
DMPlex ex3: Updated to Problem interface
DMDA: Fixed FE projection functions
PetscSection: Fixes for Fortran stubs
DMPlex+TS+Doc: Function docs
PetscSection: Fortran bindings
DMPlex+HDF5: Had revered handedness of transformed periodic coordinates
DMPlex+HDF5: Preserve aspect ratio with remapping of periodic coordinates
DMPlex: Added missing declarations
Sys+DMDT: Added PetscValidFunction()
DMPlex: Fix for DMPlexProjectField()
DMPlex+HDF5: Selectively output fields for viz - Fields with NULL name are ignored
PetscSection: Allow NULL names
DMPlex: Fixes for DMPlexProjectField()
PetscProblem: Added scalar integral (objective function) - Added PetscProblemGet/SetObjective() - Used in PetscFEIntegrate() - Reworked PetscProblemEnlarge_Static()
DM+DT: Adding Fortran bindings
PetscViewer: Added HDF_VIZ format to names
...
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| #
29f8b4da
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| 09-Jun-2014 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/feature-problem-class' into knepley/feature-quad-fas
* knepley/feature-problem-class:
PetscDS: Renamed from PetscProblem
ftn-types: fix compilers errors with PetscSection [
Merge branch 'knepley/feature-problem-class' into knepley/feature-quad-fas
* knepley/feature-problem-class:
PetscDS: Renamed from PetscProblem
ftn-types: fix compilers errors with PetscSection [remove duplicate code from petscvec*.h90]
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| #
d56a2bef
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| 09-Jun-2014 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/feature-problem-class' into knepley/fix-fe-gpu
* knepley/feature-problem-class:
PetscDS: Renamed from PetscProblem
ftn-types: fix compilers errors with PetscSection [remove
Merge branch 'knepley/feature-problem-class' into knepley/fix-fe-gpu
* knepley/feature-problem-class:
PetscDS: Renamed from PetscProblem
ftn-types: fix compilers errors with PetscSection [remove duplicate code from petscvec*.h90]
PetscSection: Fix Fortran datatypes support
DMPlex: Added quads to cell refiner transform support
DMPlex ex3: Updated to Problem interface
DMDA: Fixed FE projection functions
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| #
2764a2aa
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| 09-Jun-2014 |
Matthew G. Knepley <knepley@gmail.com> |
PetscDS: Renamed from PetscProblem
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| #
0c010903
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| 07-Jun-2014 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/feature-problem-class' into knepley/feature-quad-fas
* knepley/feature-problem-class: (38 commits)
PetscSection: Fix Fortran datatypes support
DMPlex: Added quads to cell r
Merge branch 'knepley/feature-problem-class' into knepley/feature-quad-fas
* knepley/feature-problem-class: (38 commits)
PetscSection: Fix Fortran datatypes support
DMPlex: Added quads to cell refiner transform support
DMPlex ex3: Updated to Problem interface
DMDA: Fixed FE projection functions
PetscSection: Fixes for Fortran stubs
DMPlex+TS+Doc: Function docs
PetscSection: Fortran bindings
DMPlex+HDF5: Had revered handedness of transformed periodic coordinates
DMPlex+HDF5: Preserve aspect ratio with remapping of periodic coordinates
DMPlex: Added missing declarations
Sys+DMDT: Added PetscValidFunction()
DMPlex: Fix for DMPlexProjectField()
DMPlex+HDF5: Selectively output fields for viz - Fields with NULL name are ignored
PetscSection: Allow NULL names
DMPlex: Fixes for DMPlexProjectField()
PetscProblem: Added scalar integral (objective function) - Added PetscProblemGet/SetObjective() - Used in PetscFEIntegrate() - Reworked PetscProblemEnlarge_Static()
DM+DT: Adding Fortran bindings
PetscViewer: Added HDF_VIZ format to names
PetscFE+OpenCL: Make more respectable elasticity
PetscFE+OpenCL: Add flag for printing kernel
...
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| #
dfd65c77
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| 05-Jun-2014 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/feature-problem-class' into knepley/fix-fe-gpu
* knepley/feature-problem-class: (34 commits)
PetscSection: Fixes for Fortran stubs
DMPlex+TS+Doc: Function docs
PetscSecti
Merge branch 'knepley/feature-problem-class' into knepley/fix-fe-gpu
* knepley/feature-problem-class: (34 commits)
PetscSection: Fixes for Fortran stubs
DMPlex+TS+Doc: Function docs
PetscSection: Fortran bindings
DMPlex+HDF5: Had revered handedness of transformed periodic coordinates
DMPlex+HDF5: Preserve aspect ratio with remapping of periodic coordinates
DMPlex: Added missing declarations
Sys+DMDT: Added PetscValidFunction()
DMPlex: Fix for DMPlexProjectField()
DMPlex+HDF5: Selectively output fields for viz - Fields with NULL name are ignored
PetscSection: Allow NULL names
DMPlex: Fixes for DMPlexProjectField()
PetscProblem: Added scalar integral (objective function) - Added PetscProblemGet/SetObjective() - Used in PetscFEIntegrate() - Reworked PetscProblemEnlarge_Static()
DM+DT: Adding Fortran bindings
PetscViewer: Added HDF_VIZ format to names
PetscFE+OpenCL: Make more respectable elasticity
PetscFE+OpenCL: Add flag for printing kernel
DMPlex: Fixes to DMPlexProjectField()
PetscFE: Fix work arrays
PetscFE+OpenCL: Fix interface updates
DMDT: Fix complex problems
...
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| #
4907a4d7
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| 03-Jun-2014 |
Vijay Mahadevan <vijay.m@gmail.com> |
Merged upstream/master to feature-dmmoab
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| #
299992b9
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| 03-Jun-2014 |
Vijay Mahadevan <vijay.m@gmail.com> |
Merge remote-tracking branch 'upstream/master'
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| #
c1929be8
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| 03-Jun-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DM+DT: Adding Fortran bindings
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| #
b015001c
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| 28-May-2014 |
Peter Brune <brune@mcs.anl.gov> |
Merge branch 'master' into prbrune/snes-fascontinuation
* master: (855 commits)
fix for moab example had wrong blocksize of mapping
docs:remove src/docs/doxygen/manual [per Barry's instructions]
Merge branch 'master' into prbrune/snes-fascontinuation
* master: (855 commits)
fix for moab example had wrong blocksize of mapping
docs:remove src/docs/doxygen/manual [per Barry's instructions]
gfortran: remove 132 char limit from f90 free-form
SNES: Set up matrix-free *after* copying the user Jacobian to snes->pc
DMPlex-Gmsh: Use trueNumCells when building the coordinate section
Sys: Got guard logic reversed
Sys: The #define guard for PetscMalloc*() must match the one for PetscFree*()
PetscFV: I hate fucking complex
removed ltog scatter from DMDA since functionality can be obtained with gtol scatter and less memory
fix test of DMLocalToGlobalBegin/End and add actual test cases
improve object memory logging for DA, ISLocalToGlobal and ISBLOCK
lower high water mark of constructing parallel scatter by allocating only as much room in svalues as needed
owner in VecScatter construction is the rank, therefor can use PetscMPIInt to hold it do not PetscInt
another reuse of allocated array in 2d/3d DMDA create
improved high water mark of DMDASetups by implementing and using PETSC_USE_POINTER for ISCreateBlock()
PetscFV: Another complex fix
DMPlex+TS: Fixing types
ISIdentity() was wrong for block IS! Indices are NOT scaled by bs
PetscFV: Straighten out complex types
TS ex11: Fix casts and remove unused variable
...
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| #
235fbf56
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| 28-May-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DM: Fix incorrect check
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| #
0f21e855
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| 28-May-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DM: Replace field mechanism with a PetscProblem
- Right now, this is still just a collection of PetscObjects, but it is supposed to turn into a Discretization abstraction
- Now that we have PetscProb
DM: Replace field mechanism with a PetscProblem
- Right now, this is still just a collection of PetscObjects, but it is supposed to turn into a Discretization abstraction
- Now that we have PetscProblem we can likely handle nullspaces, etc. in a more principled way
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| #
fed2a9ca
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| 28-May-2014 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/fix-fe-multifield'
* knepley/fix-fe-multifield:
DMPlex ex4: Changed numbering for hybrid edges
DMPlex ex3: Interpolation now working for Discontinuous Lagrange
PetscDualS
Merge branch 'knepley/fix-fe-multifield'
* knepley/fix-fe-multifield:
DMPlex ex4: Changed numbering for hybrid edges
DMPlex ex3: Interpolation now working for Discontinuous Lagrange
PetscDualSpace: Fixed index error in Lagrange creation
PetscFE: Fixed PetscFERefine() - The refined dual space was not properly duplicated - Added PetscDualSpaceDuplicate()
DMPlex ex1: Updated test output
DM: Added check for erroneous input when creating default SF
PetscFE: Fixed allocation bug
PetscBag: Added PetscBagGetNames()
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| #
4244436b
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| 27-May-2014 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'jed/dmda-memusage'
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| #
fc31e74d
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| 27-May-2014 |
Barry Smith <bsmith@mcs.anl.gov> |
removed some leftover localtoglobalmappingblock code
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| #
92c494f3
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| 23-May-2014 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'master' into barry/saws-options
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| #
021e0df4
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| 23-May-2014 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'jed/dmda-memusage'
|