Merged in barry/update-collective-on (pull request #1744)

Update the use of Collective on in the manual pages to reflect the new style

Merged in knepley/fix-subdm-multiple-ds (pull request #1701)

Knepley/fix subdm multiple ds

Update the use of Collective on in the manual pages to reflect the new style

Commit-type: style-fix, documentation
Thanks-to: Patrick Sanan <patrick.sanan@gmail.com>

Merged in psanan/man-pages-remove-keywords (pull request #1717)

Man pages: Remove .keywords fields

Approved-by: BarryFSmith <bsmith@mcs.anl.gov>

Man pages: remove .keywords: fields

This field is recognized by doctext from Sowing (http://wgropp.cs.illinois.edu/projects/software/sowing/doctext/node20.htm#Node20),
but it doesn't seem to be unif

Man pages: remove .keywords: fields

This field is recognized by doctext from Sowing (http://wgropp.cs.illinois.edu/projects/software/sowing/doctext/node20.htm#Node20),
but it doesn't seem to be uniformly used or maintained.

Thus, remove all .keywords: fields, and a following blank line, if present.

This is accomplished with GNU sed (gsed on OS X), with the following commands.
*Warning* that this type of command can corrupt a .git directory,
so be cautious in reusing or modifying these commands. They first look
for and delete matching lines with a following line consisting of only whitespace,
and then delete any remaining matching lines.

find src/ -type f -exec gsed -i '/keywords:/ {N; /\n\s*$/d}' {} +
find src/ -type f -exec gsed -i '/keywords:/d' {} +
find include/ -type f -exec gsed -i '/keywords:/ {N; /\n\s*$/d}' {} +
find include/ -type f -exec gsed -i '/keywords:/d' {} +

Hints on the sed command obtained from: https://unix.stackexchange.com/questions/100754/how-to-delete-a-specific-line-and-the-following-blank-line-using-gnu-sed

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DM: Add field table to hybrid DS

Merged in Patrick-Sanan/dmc-edited-online-with-bitbucket-1558528830874 (pull request #1694)

DM docs: remove DMHasFunction from man page .seealso fields

Approved-by: Satish Balay <balay@mcs.anl.gov>

Merged in barry/check-bad-urls (pull request #1685)

Barry/check bad urls

Approved-by: Patrick Sanan <patrick.sanan@gmail.com>
Approved-by: Junchao Zhang <junchao.zhang@gmail.com>

DM docs: remove DMHasFunction from man page .seealso fields

Fixed out-dated URLS using make checkbadURLS REPLACE=1

One manual fix of https://en.wikipedia.org/wiki/Buckingham_π_theorem since the automatic tool dropped the first _ for some reason
Manual fix of

Fixed out-dated URLS using make checkbadURLS REPLACE=1

One manual fix of https://en.wikipedia.org/wiki/Buckingham_π_theorem since the automatic tool dropped the first _ for some reason
Manual fix of //faq.html since the automatic tool incorrectly replaced /faq.html to //faq.html in some locations

These are largely updates of http to https but have a variety of other website location changes

Once this branch is in master individual developers can run make checkbadURLS and fix URLs related to their projects manually

Commit-type: bug-fix, documentation

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Merged in psanan/dmc-edited-online-with-bitbucket-1557922334695 (pull request #1669)

DMGetDimPoints man page: output parameters format fix

Approved-by: Satish Balay <balay@mcs.anl.gov>

DMGetDimPoints man page: output parameters format fix

Merged in knepley/feature-dm-global-basis (pull request #1582)

Knepley/feature dm global basis

Approved-by: BarryFSmith <bsmith@mcs.anl.gov>

Doc+Plex: Added notes on function use
- Added collective doc

DM: Add ability to specify different global and local bases
- The global basis is for solving and applying BC
- The local basis is for assembly
- We transform bases in DMLocalToGlobal() and DMGlobalT

DM: Add ability to specify different global and local bases
- The global basis is for solving and applying BC
- The local basis is for assembly
- We transform bases in DMLocalToGlobal() and DMGlobalToLocal()
- Added a default implementation which does a rotation
- Transform functions used in BC and exact solutions, which we assume operate in the global basis
- Transform functions used in projection, which we assume operate in the global basis
- Transform Jacobian values to the global basis before insertion
- Transform coordinates to global basis when calling out projection, BC, and exact solution functions
- Copy transforms when forming a hierarchy
- Added many tiny LA things (Eigen is no longer a good dependency)

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Merged in knepley/feature-plex-subds (pull request #1554)

Knepley/feature plex subds

Approved-by: BarryFSmith <bsmith@mcs.anl.gov>

DM: Don't let this little IS get caught up in the dragnet of -is_view

DM: Add translation between DM field numbers and DS field numbers
- Changed interface for DMGet/SetRegionDS(), DMGetRegionNumDS()

Merge branch 'maint'

Merged in psanan/dm-compatibility-fixes/maint (pull request #1530)

Minor bug fix for DMGetCompatibility_Stag(), plus docs and tests

Approved-by: BarryFSmith <bsmith@mcs.anl.gov>

Docs: DMGetCompatibility man page typo fixes

Merge branch 'master' of bitbucket.org:petsc/petsc

Merged in knepley/feature-plex-parallel-periodic-viz (pull request #1432)

Knepley/feature plex parallel periodic viz

Merged in knepley/feature-move-adj-to-dm (pull request #1424)

Knepley/feature move adj to dm

Merged in knepley/must-copy-discretization-to-cloned-coord-1552325636028 (pull request #1433)

Must copy discretization to cloned coordinate DM