| #
852f401d
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| 24-Apr-2017 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'master' into knepley/feature-plex-torus
* master: (174 commits)
Bib: Another ref
Increase patchlevel to 3.7.6
Explicitly listing the LTO library causes difficulties on MacOS so a
Merge branch 'master' into knepley/feature-plex-torus
* master: (174 commits)
Bib: Another ref
Increase patchlevel to 3.7.6
Explicitly listing the LTO library causes difficulties on MacOS so avoid it
TSBDF: Update changes/dev.html
Added Fortran TaoType and TaoLineSearchType definitions
Add Fortran TaoType and TaoLineSearchType definitions
setblocksize for iscol_sub
TSBDF: Use standard TS API and options to control adaptivity
Bib: More refs and a correction
SNESTest: Bug-fix in SNESTest when threshold printing option is turned on.
fix warning and valgrind complains reported by the nightly tests
Section+Doc: Small doc fix
pflotran: switch to using the new upstream git repo
DMPlex: Error if attempt to partition a distributed graph with Chaco
fix complex build error
fix complex build
PetscError() did not properly copy over the specific error message when error type was PETSC_ERROR_INITIAL
TSAdapt: Refactor handling of the always_accept flag
Additional clarification for MatMeshToCellGraph() manual page
optimize MatCreateSubMatrix_MPIAIJ() by merging check of sameXXXDist() into one MPI_AllReduce
...
Conflicts:
config/BuildSystem/config/packages/med.py
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| #
31c15585
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| 19-Apr-2017 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'dalcinl/fix-bdf-adapt' into barry/update-petscfileretrieve
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| #
deb97f3f
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| 19-Apr-2017 |
Stefano Zampini <stefano.zampini@gmail.com> |
PCBDDC: fix reusage of solvers
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| #
9c3dff32
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| 18-Apr-2017 |
Stefano Zampini <stefano.zampini@gmail.com> |
PCBDDC: fix logic in reusing solver
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| #
a12b9eaf
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| 18-Apr-2017 |
Toby Isaac <tisaac@uchicago.edu> |
Merge branch 'tisaac/feature-plex-deterministic-viewing' into tisaac/feature-plex-tests-new
* tisaac/feature-plex-deterministic-viewing:
DMLabel: sort strata after distributing
PetscError() did
Merge branch 'tisaac/feature-plex-deterministic-viewing' into tisaac/feature-plex-tests-new
* tisaac/feature-plex-deterministic-viewing:
DMLabel: sort strata after distributing
PetscError() did not properly copy over the specific error message when error type was PETSC_ERROR_INITIAL
Additional clarification for MatMeshToCellGraph() manual page
med: --with-hdf5, not --with-hdf5-dir
DMPlex_GMSH: revert to not inverting triangles
sys tests ex13f: fix type mismatch in composition test
PCBDDC: use a sparse rhs when the solver is MUMPS
Sys ex13: Added test for object composition in Fortran
Sys: Added Fortran binding for object composition
MatMUMPS: added support for sparse right-hand sides in sequential
show more ...
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| #
32fe705c
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| 17-Apr-2017 |
Stefano Zampini <stefano.zampini@gmail.com> |
Merge branch 'stefano_zampini/feature-allow-bddc-monolithic' into stefano_zampini/feature-fetidp-ex69
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| #
c6da366e
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| 13-Apr-2017 |
Stefano Zampini <stefano.zampini@gmail.com> |
PCBDDC: fix bug with l2l
We cannot assume vins is a subvector of v. Using VecScatter is a more general solution
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| #
99989559
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| 11-Apr-2017 |
Stefano Zampini <stefano.zampini@gmail.com> |
Merge remote-tracking branch 'origin/stefano_zampini/feature-sparserhs'
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| #
0b41d6cd
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| 09-Apr-2017 |
Stefano Zampini <stefano.zampini@gmail.com> |
PCBDDC: use plex information (if available) to compute disconnected subdomains
If we have access to the mesh, we can also identify cross-vertices
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| #
1ebb90a1
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| 05-Apr-2017 |
Stefano Zampini <stefano.zampini@gmail.com> |
PCBDDC: get fields from the DM when available
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| #
177b3456
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| 03-Apr-2017 |
Stefano Zampini <stefano.zampini@gmail.com> |
Merge branch 'stefano_zampini/enhancements-fetidp-saddlepoint' into stefano_zampini/feature-fetidp-ex69
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| #
db568444
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| 15-Jan-2017 |
stefano_zampini <stefano.zampini@gmail.com> |
KSPFETIDP/PCBDDC: compute non-pde-harmonic Schur complement for deluxe if requested
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| #
365be843
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| 13-Jan-2017 |
stefano_zampini <stefano.zampini@gmail.com> |
PCBDDC: remove zeroed out rows for local interface pressure
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| #
c58f9fdb
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| 03-Apr-2017 |
Stefano Zampini <stefano.zampini@gmail.com> |
PCBDDC: use a sparse rhs when the solver is MUMPS
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| #
a166d259
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| 15-Mar-2017 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/fix-plex-example-logging' into knepley/feature-plex-torus
* knepley/fix-plex-example-logging: (151 commits)
Plex ex12: Added logging stages
Plex ex1: Added logging stages
Merge branch 'knepley/fix-plex-example-logging' into knepley/feature-plex-torus
* knepley/fix-plex-example-logging: (151 commits)
Plex ex12: Added logging stages
Plex ex1: Added logging stages
update to latest hypre tag on github
fix 'inf' vs 'Inf' diff wrt vec_vec_utils_tagger_tutorials-ex1_8,9,18,19
MatSetOption(mat,MAT_IGNORE_ZERO_ENTRIES,PETSC_TRUE) no longer applies to zero values set or added to the matrix diagonal, they are now not ignored and are included in the matrix nonzero structure. This is useful for Jacobians passed to TS.
replace use/mention of depreciated -log_summary in many places
add extchem.py which was written years ago but never put in the distribution (hence it is broken).
petsc4py: update to snapshot with MatGetSubMatrices -> MatCreateSubMatrices etc API changes
Minor fixes for tchem examples due to changes in PETSc infrastructure
update webpage about API changes
add help menu for MatCreateSubMatricesMPI()
PetscCMPLX: assume type punning is safe
rename struct Mat_SubMat -> Mat_SubSppt
add a little information to the manual about using tchem
rename MatCreateSubMatrixComposite -> MatCreateSubMatrixVirtual; Mat_SubMatrix -> Mat_SubVirtual
need to protect the \ passed on the makefile on my Mac
Bib: Updated ref
update src/mat/examples/tests/output/ex23_#.out
rename MatGetSubMat -> MatCreateSubMat
Mark MatCreateMPIAIJWithSplitArrays() and MatMPIAIJSetPreallocationCSR() with MAT_NO_OFF_PROC_ENTRIES
...
Conflicts:
src/dm/impls/plex/examples/tests/ex1.c
src/dm/impls/plex/examples/tests/ex12.c
show more ...
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| #
851d29aa
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| 15-Mar-2017 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/fix-plex-example-logging' into knepley/feature-plex-tests-new
* knepley/fix-plex-example-logging: (151 commits)
Plex ex12: Added logging stages
Plex ex1: Added logging stag
Merge branch 'knepley/fix-plex-example-logging' into knepley/feature-plex-tests-new
* knepley/fix-plex-example-logging: (151 commits)
Plex ex12: Added logging stages
Plex ex1: Added logging stages
update to latest hypre tag on github
fix 'inf' vs 'Inf' diff wrt vec_vec_utils_tagger_tutorials-ex1_8,9,18,19
MatSetOption(mat,MAT_IGNORE_ZERO_ENTRIES,PETSC_TRUE) no longer applies to zero values set or added to the matrix diagonal, they are now not ignored and are included in the matrix nonzero structure. This is useful for Jacobians passed to TS.
replace use/mention of depreciated -log_summary in many places
add extchem.py which was written years ago but never put in the distribution (hence it is broken).
petsc4py: update to snapshot with MatGetSubMatrices -> MatCreateSubMatrices etc API changes
Minor fixes for tchem examples due to changes in PETSc infrastructure
update webpage about API changes
add help menu for MatCreateSubMatricesMPI()
PetscCMPLX: assume type punning is safe
rename struct Mat_SubMat -> Mat_SubSppt
add a little information to the manual about using tchem
rename MatCreateSubMatrixComposite -> MatCreateSubMatrixVirtual; Mat_SubMatrix -> Mat_SubVirtual
need to protect the \ passed on the makefile on my Mac
Bib: Updated ref
update src/mat/examples/tests/output/ex23_#.out
rename MatGetSubMat -> MatCreateSubMat
Mark MatCreateMPIAIJWithSplitArrays() and MatMPIAIJSetPreallocationCSR() with MAT_NO_OFF_PROC_ENTRIES
...
Conflicts:
src/dm/impls/plex/examples/tests/ex12.c
show more ...
|
| #
c90b701e
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| 14-Mar-2017 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'master' into knepley/feature-plex-pragmatic-parallel
* master: (1379 commits)
Minor fixes for tchem examples due to changes in PETSc infrastructure
update webpage about API changes
Merge branch 'master' into knepley/feature-plex-pragmatic-parallel
* master: (1379 commits)
Minor fixes for tchem examples due to changes in PETSc infrastructure
update webpage about API changes
add help menu for MatCreateSubMatricesMPI()
rename struct Mat_SubMat -> Mat_SubSppt
add a little information to the manual about using tchem
rename MatCreateSubMatrixComposite -> MatCreateSubMatrixVirtual; Mat_SubMatrix -> Mat_SubVirtual
need to protect the \ passed on the makefile on my Mac
Bib: Updated ref
update src/mat/examples/tests/output/ex23_#.out
rename MatGetSubMat -> MatCreateSubMat
Mark MatCreateMPIAIJWithSplitArrays() and MatMPIAIJSetPreallocationCSR() with MAT_NO_OFF_PROC_ENTRIES
superlu: libray is installed in PREFIX/lib64 - fix this to use PREFIX/lib
backport fixes cc105cc3 2b35c90a - required for 3bf428d - that was backported from master - 80c96bb
'echo -n' fails on opensolaris/osx - so avoid using it.
fix diffs in nightlybuilds due to options in ~/.petscrc
add Kelley03 to src/docs/tex/petsc.bib
build: determine moudles, mpi.h used during buildtime and print in 'info'
fix analyzer warnings
fix build failure on opensolaris - where -lm from flibs is removed due to -lm in cxxlibs. But then - only flib gets used for some configure tests [blaslapack, parms]
config: prefer __restrict over C99 restrict keyword
...
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| #
1d75c216
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| 14-Mar-2017 |
Stefano Zampini <stefano.zampini@gmail.com> |
PCBDDC: add command line option to not use strided fields if bs > 1
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| #
0e168440
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| 08-Mar-2017 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'master' of bitbucket.org:petsc/petsc
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| #
8cc6944d
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| 08-Mar-2017 |
Satish Balay <balay@mcs.anl.gov> |
Merge remote-tracking branch 'origin/hzhang/rename_matgetsubmats'
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| #
7dae84e0
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| 07-Mar-2017 |
Hong Zhang <hzhang@mcs.anl.gov> |
rename MatGetSubMat -> MatCreateSubMat
|
| #
9137bce6
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| 24-Dec-2016 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'barry/remove-funct'
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| #
fbfcfee5
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| 19-Dec-2016 |
Barry Smith <bsmith@mcs.anl.gov> |
Remove the use and definition of __FUNCT__ throughout the code
Since all modern C/C++ compilers provide this functionality we no longer need to provide it manually in PETSc
Time: 1.5 hours
Thanks-t
Remove the use and definition of __FUNCT__ throughout the code
Since all modern C/C++ compilers provide this functionality we no longer need to provide it manually in PETSc
Time: 1.5 hours
Thanks-to: Andreas Mang <andreas@ices.utexas.edu>
show more ...
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| #
0b33b61e
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| 13-Dec-2016 |
stefano_zampini <stefano.zampini@gmail.com> |
Merge branch 'stefano_zampini/feature-pcbddc-saddlepoint'
Conflicts:
src/mat/impls/aij/mpi/mpiaij.c
src/mat/impls/is/matis.c
Modified ex23.c for the API change of the function CheckMat
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| #
b76f3995
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| 13-Dec-2016 |
stefano_zampini <stefano.zampini@gmail.com> |
PCBDDC: fix any bad command line customization for multilevel
-pc_bddc_levels (or PCBDDCSetLevels) take precedence on, e.g., -pc_bddc_coarse_pc_type cholesky
|