PCGAMG did not respect MPIAIJ matrix type when passed in on one process
It used AIJ on one process in some cases causing crashes.
Now PCGAMG uses consistently the Seq or MPI nature of the input matri

PCGAMG did not respect MPIAIJ matrix type when passed in on one process
It used AIJ on one process in some cases causing crashes.
Now PCGAMG uses consistently the Seq or MPI nature of the input matrix to
create its new matrices and no longer crashes with input MPIAIJ matrix on
one process.

Reported-by: Randall Mackie <rlmackie862@gmail.com>

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fixed non-PETSc standard usage of const in GAMG code

unify spelling/abbreviation of some internal GAMG functions and the logging variables and names printed in -log_summary

Please always use the same abbreviations/capitalizations/spellings for related

unify spelling/abbreviation of some internal GAMG functions and the logging variables and names printed in -log_summary

Please always use the same abbreviations/capitalizations/spellings for related things. It is difficult for anyone else to understand/modify code if there are random small differences

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Merge branch 'master' into stefano_zampini/pcbddc-adaptive-selection

Conflicts:
src/ksp/pc/impls/bddc/bddcprivate.c

Merge branch 'master' into barry/saws-options-merge-master

Totally confusing manual merge, could be wrong

Conflicts:
include/petscoptions.h
src/dm/impls/da/dacreate.c
src/sys/objects/aoptions.c

Merge branch 'master' into barry/saws-options-merge-master

Totally confusing manual merge, could be wrong

Conflicts:
include/petscoptions.h
src/dm/impls/da/dacreate.c
src/sys/objects/aoptions.c
src/sys/threadcomm/interface/threadcomm.c

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Merge branch 'master' into pr252/dmay/PetscViewerBinarySkipHeaderVecViewLoad
Manual merge of makefile

Conflicts:
src/sys/classes/viewer/examples/tutorials/makefile

Merge branch 'barry/experiment'

GAMG: fix inclusion of source headers in public header

The source headers that GAMG uses to access matrix types have been moved
back to gamg.h

Move MG and GAMG implementation headers to petsc-private

I want to be able to register GAMG plugins. I considered a few options:

a) Move the implementation headers to petsc-private so they can be

Move MG and GAMG implementation headers to petsc-private

I want to be able to register GAMG plugins. I considered a few options:

a) Move the implementation headers to petsc-private so they can be
installed

b) Make Get/Set methods for all of the GAMGOps: graph, coarsen,
optprol, etc.

c) Add a PCGAMGGet/SetOperation like MatShellGet/SetOperation for each
of these operations.

The easiest was (a), and the GAMG methods are so context-specific I'm
not sure who would benefit from their being part of the public petsc
interface. If GAMG get's refactored to where the operations are easier
to understand on their own, then maybe (b) or (c) would be a better
option.

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simplify option object names

updated new XXXSetFromOptions_YYY() methods to take PetscOptionsObjectType

moved PetscOptionsObject from global variable to local variable in functions

Merge branch 'master' into mlange/refactor-plex-distribute

Conflicts:
src/dm/impls/plex/examples/tests/output/ex12_1.out
src/dm/impls/plex/examples/tests/output/ex12_2.out

Merge branch 'master' of bitbucket.org:petsc/petsc

Merge branch 'barry/fix-setters'

added a variety of getters and fixed calling sequence of a few setters

Merge branch 'tisaac/feature-fe-geom-dim' into tisaac/plex-flexible-projection

Use the new PetscFECellGeom

Conflicts:
include/petscdmplex.h
include/petscfe.h
src/dm/impls/plex/plexfem.c

Merge branch 'master' of bitbucket.org:petsc/petsc into mark/ex49-bs

Merge branch 'barry/docs-matblocksize'

MatGetVecs() and KSPGetVecs() replaced with MatCreateVecs() and KSPCreateVecs()
since they are creators not getters

Merge branch 'master' into prbrune/snes-fascontinuation

* master: (855 commits)
fix for moab example had wrong blocksize of mapping
docs:remove src/docs/doxygen/manual [per Barry's instructions]

Merge branch 'master' into prbrune/snes-fascontinuation

* master: (855 commits)
fix for moab example had wrong blocksize of mapping
docs:remove src/docs/doxygen/manual [per Barry's instructions]
gfortran: remove 132 char limit from f90 free-form
SNES: Set up matrix-free *after* copying the user Jacobian to snes->pc
DMPlex-Gmsh: Use trueNumCells when building the coordinate section
Sys: Got guard logic reversed
Sys: The #define guard for PetscMalloc*() must match the one for PetscFree*()
PetscFV: I hate fucking complex
removed ltog scatter from DMDA since functionality can be obtained with gtol scatter and less memory
fix test of DMLocalToGlobalBegin/End and add actual test cases
improve object memory logging for DA, ISLocalToGlobal and ISBLOCK
lower high water mark of constructing parallel scatter by allocating only as much room in svalues as needed
owner in VecScatter construction is the rank, therefor can use PetscMPIInt to hold it do not PetscInt
another reuse of allocated array in 2d/3d DMDA create
improved high water mark of DMDASetups by implementing and using PETSC_USE_POINTER for ISCreateBlock()
PetscFV: Another complex fix
DMPlex+TS: Fixing types
ISIdentity() was wrong for block IS! Indices are NOT scaled by bs
PetscFV: Straighten out complex types
TS ex11: Fix casts and remove unused variable
...

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Merge branch 'master' into barry/saws-options

Merge branch 'master' into stefano_zampini/pcbddc-multilevel-improvement

Conflicts:
src/docs/website/documentation/changes/dev.html
src/ksp/ksp/examples/tutorials/ex59.c
src/ksp/pc/impls/bddc/bdd

Merge branch 'master' into stefano_zampini/pcbddc-multilevel-improvement

Conflicts:
src/docs/website/documentation/changes/dev.html
src/ksp/ksp/examples/tutorials/ex59.c
src/ksp/pc/impls/bddc/bddcprivate.c

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Merge remote-tracking branch 'origin/master' into feature-dmmoab

Merged petsc/petsc into master