Merge branch 'knepley/fix-plex-output' into mark/snes-ex56

* knepley/fix-plex-output:
Quadrature: Fix creation init
Plex: Fix output optimization - We obviously have no test for this logic
All

Merge branch 'knepley/fix-plex-output' into mark/snes-ex56

* knepley/fix-plex-output:
Quadrature: Fix creation init
Plex: Fix output optimization - We obviously have no test for this logic
Allow the Richardson scale factor to be reset at each iteration
prevent a possible segfault when m is 0 (or less)
when configured --with-errorchecking=0, CHKERRV is missing
essl: fix PetscOptionsGetReal() usage
Fix code comment. Routine actually does not add arguments to database it just reads them in
Fix performance issue in MatAIJCUSPARSE after 34d6c7a
Plex ex6: fix PetscInt print codes
DMPlex: fix PetscPartitionerPartition() to deal with overlap

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Merge branch 'maint'

prevent a possible segfault when m is 0 (or less)

Merge branch 'master' into stefano_zampini/feature-pcbddc-saddlepoint

Conflicts:
src/docs/website/documentation/changes/dev.html
src/ksp/ksp/examples/tutorials/ex59.c
src/ksp/pc/impls/bddc/bddc.c

Merge branch 'master' into stefano_zampini/feature-pcbddc-saddlepoint

Conflicts:
src/docs/website/documentation/changes/dev.html
src/ksp/ksp/examples/tutorials/ex59.c
src/ksp/pc/impls/bddc/bddc.c
src/ksp/pc/impls/bddc/bddcfetidp.c
src/ksp/pc/impls/bddc/bddcprivate.c
src/ksp/pc/impls/bddc/bddcschurs.c
src/mat/impls/is/matis.c
src/mat/impls/is/matis.h

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Merge branch 'maint'

Merge branch 'stefano_zampini/fix-matgetrowij' into maint

Fix bugs in MatGetRowIJ_SeqBAIJ and MatGetRowIJ_SeqSBAIJ

MatGetRowIJ_SeqBAIJ had a bug for blockcompressed case and shift ==1
MatGetRowIJ_SeqSBAIJ was almost completely broken: the code is now a dup

Fix bugs in MatGetRowIJ_SeqBAIJ and MatGetRowIJ_SeqSBAIJ

MatGetRowIJ_SeqBAIJ had a bug for blockcompressed case and shift ==1
MatGetRowIJ_SeqSBAIJ was almost completely broken: the code is now a duplicate of MatGetRowIJ_SeqBAIJ
Added an extra PetscBool parameter to MatToSymmetricIJ_SeqAIJ to select whether to symmetrize the lower triangular or the upper triangular part (default is lower triangular, as before); this is needed by MatGetRowIJ_SeqBAIJ to work properly

Added ex26.c to test MatGetRowIJ for SEQAIJ,SEQBAIJ and SEQSBAIJ

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Merge branch 'master' into knepley/feature-parallel-mesh-load

* master: (180 commits)
Bib: Added ref
-random_view caused error because PetscRandomView() was not provided in PetscRandomCreate()

Merge branch 'master' into knepley/feature-parallel-mesh-load

* master: (180 commits)
Bib: Added ref
-random_view caused error because PetscRandomView() was not provided in PetscRandomCreate()
Update the xSDKTrilinos test message to use interactive session and ctest
gcc6: fix comple warnings with -Wmisleading-indentation
fix compile warning
bugfix for MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable()
minor formatting cleanup of gamg.c
add ml example to tutorials page for xsdk
bugfix of MatDuplicate for mpiaij matrix product Reported-by: Miorelli, Federico <Federico.Miorelli@cgg.com>
The deprecated -log_summary_exclude was still being used when it should have been -log_exclude
cpardiso: requires mkl_blacs so check for that. Also common code to detect MKL for both pardiso and cpardiso
cpardiso: fix segv and memory leaks
resume MatGetSubMatrix_SeqSBAIJ() because it cannot share routine with BAIJ due to cast
fix bad relative links
replace MatSeqBAIJSetPreallocation_SeqBAIJ with MatSeqBAIJSetPreallocation to skip this call when input mat is sbaij type
fix a variety of set but not used variables in examples detected by clang static analyzer
removed declared but not used variable
ANL Report formatting requires listing authors by affiliation
DMP4est: uncrustify
DMP4est: remove memset()
...

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Merge branch 'master' into stefano_zampini/feature-pcbddc-saddlepoint

Conflicts:
src/ksp/pc/impls/bddc/bddc.c
src/ksp/pc/impls/bddc/bddcgraph.c
src/ksp/pc/impls/bddc/bddcprivate.c

Merge branch 'master' of bitbucket.org:petsc/petsc

Merge branch 'maint'

Merge remote-tracking branch 'origin/jed/fix-matnorm-log-flops' into maint

MatNorm: fix negative logging and missing error handling

Merge remote-tracking branch 'origin/jed/fix-matnorm-log-flops' into maint

Merge branch 'jed/fix-matnorm-log-flops'

* jed/fix-matnorm-log-flops:
MatNorm: fix missing PetscLogFlops

MatNorm: fix missing PetscLogFlops

Reported-by: Anishi Gupta <anishi.anishi@gmail.com>

Merge branch 'hzhang/matpackage-type'

set solvertype for inplace MatxxxFactor()

Fixes for issues found with clang static analyzer,
mostly set but unused variables

Time: 1 hour

Merge branch 'master' into stefano_zampini/feature-pcbddc-saddlepoint

Merged in dalcinl/draw-null (pull request #434)

PetscDraw: Proper implementation of PETSC_DRAW_NULL

PetscDraw: Proper implementation of PETSC_DRAW_NULL

* Remove special casing of PETSC_DRAW_NULL in the draw interface
* Rework handling of PETSC_DRAW_NULL in Draw{Axis|LG|SP|BAR|HG}
* Some 'extern' -

PetscDraw: Proper implementation of PETSC_DRAW_NULL

* Remove special casing of PETSC_DRAW_NULL in the draw interface
* Rework handling of PETSC_DRAW_NULL in Draw{Axis|LG|SP|BAR|HG}
* Some 'extern' -> 'PETSC_INTERN' fixes
* Add missing error checking

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Merge branch 'master' into knepley/feature-plex-handle-func-failure

* master: (378 commits)
SNES ex5: Fix coordinate determination for empty subdomains
fixed petsc.bib entry
p4est: fix syntax

Merge branch 'master' into knepley/feature-plex-handle-func-failure

* master: (378 commits)
SNES ex5: Fix coordinate determination for empty subdomains
fixed petsc.bib entry
p4est: fix syntax error with error message
SNES ex5: Correct Jacobian handling on patches
SNES ex5: Stupid complex fixes
DMP4est: fix transfer of labels to parents
petsc4py: update to latest snapshot. Fixes da example breakage in petsc4py test suite
Plex: Correct setting of options on refined or coarsened meshes
Plex: Add info for grid hashing
Plex: Add logging in interpolator creation
Plex: Correct use of tabs in ASCII viewer
DM: Shorten long event name
Plex ex12: Create boundary label automatically at all levels of mesh hierarchy
Plex ex12: Change PetscViewerSetFormat --> PetscViewerPushFormat - Fix order of SetMode and SetFilename
Plex ex12: Change all functions to static
Since DMDA with periodic boundary conditions does support P0 interpolation remove checks that error out under those conditions
ascem-io.py and amanzi.py need to handle self.hdf5.include being None correctly
fix MPI Uni to recycle communicators so it won't run out like with the petsc4py tests also fix check for location of python shared library on mac to check all cases each time
Switch back to Sherry's version since she accepted by pull request
PetscDraw: Update help messages for -draw_save* options
...

Conflicts:
src/dm/impls/plex/plexfem.c

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Merged petsc/petsc into master

Merge branch 'barry/fix-private-functions'