| #
3e98d00b
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| 17-Mar-2017 |
Satish Balay <balay@mcs.anl.gov> |
Merge remote-tracking branch 'origin/balay/fix-redundant-decls-warnings-master'
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| #
ec07b8f8
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| 16-Mar-2017 |
Hong Zhang <hzhang@mcs.anl.gov> |
add support for matmatops_mpiaij for np=1
Requested-by: Ce Qin <qince168@gmail.com>
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| #
a166d259
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| 15-Mar-2017 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/fix-plex-example-logging' into knepley/feature-plex-torus
* knepley/fix-plex-example-logging: (151 commits)
Plex ex12: Added logging stages
Plex ex1: Added logging stages
Merge branch 'knepley/fix-plex-example-logging' into knepley/feature-plex-torus
* knepley/fix-plex-example-logging: (151 commits)
Plex ex12: Added logging stages
Plex ex1: Added logging stages
update to latest hypre tag on github
fix 'inf' vs 'Inf' diff wrt vec_vec_utils_tagger_tutorials-ex1_8,9,18,19
MatSetOption(mat,MAT_IGNORE_ZERO_ENTRIES,PETSC_TRUE) no longer applies to zero values set or added to the matrix diagonal, they are now not ignored and are included in the matrix nonzero structure. This is useful for Jacobians passed to TS.
replace use/mention of depreciated -log_summary in many places
add extchem.py which was written years ago but never put in the distribution (hence it is broken).
petsc4py: update to snapshot with MatGetSubMatrices -> MatCreateSubMatrices etc API changes
Minor fixes for tchem examples due to changes in PETSc infrastructure
update webpage about API changes
add help menu for MatCreateSubMatricesMPI()
PetscCMPLX: assume type punning is safe
rename struct Mat_SubMat -> Mat_SubSppt
add a little information to the manual about using tchem
rename MatCreateSubMatrixComposite -> MatCreateSubMatrixVirtual; Mat_SubMatrix -> Mat_SubVirtual
need to protect the \ passed on the makefile on my Mac
Bib: Updated ref
update src/mat/examples/tests/output/ex23_#.out
rename MatGetSubMat -> MatCreateSubMat
Mark MatCreateMPIAIJWithSplitArrays() and MatMPIAIJSetPreallocationCSR() with MAT_NO_OFF_PROC_ENTRIES
...
Conflicts:
src/dm/impls/plex/examples/tests/ex1.c
src/dm/impls/plex/examples/tests/ex12.c
show more ...
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| #
851d29aa
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| 15-Mar-2017 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/fix-plex-example-logging' into knepley/feature-plex-tests-new
* knepley/fix-plex-example-logging: (151 commits)
Plex ex12: Added logging stages
Plex ex1: Added logging stag
Merge branch 'knepley/fix-plex-example-logging' into knepley/feature-plex-tests-new
* knepley/fix-plex-example-logging: (151 commits)
Plex ex12: Added logging stages
Plex ex1: Added logging stages
update to latest hypre tag on github
fix 'inf' vs 'Inf' diff wrt vec_vec_utils_tagger_tutorials-ex1_8,9,18,19
MatSetOption(mat,MAT_IGNORE_ZERO_ENTRIES,PETSC_TRUE) no longer applies to zero values set or added to the matrix diagonal, they are now not ignored and are included in the matrix nonzero structure. This is useful for Jacobians passed to TS.
replace use/mention of depreciated -log_summary in many places
add extchem.py which was written years ago but never put in the distribution (hence it is broken).
petsc4py: update to snapshot with MatGetSubMatrices -> MatCreateSubMatrices etc API changes
Minor fixes for tchem examples due to changes in PETSc infrastructure
update webpage about API changes
add help menu for MatCreateSubMatricesMPI()
PetscCMPLX: assume type punning is safe
rename struct Mat_SubMat -> Mat_SubSppt
add a little information to the manual about using tchem
rename MatCreateSubMatrixComposite -> MatCreateSubMatrixVirtual; Mat_SubMatrix -> Mat_SubVirtual
need to protect the \ passed on the makefile on my Mac
Bib: Updated ref
update src/mat/examples/tests/output/ex23_#.out
rename MatGetSubMat -> MatCreateSubMat
Mark MatCreateMPIAIJWithSplitArrays() and MatMPIAIJSetPreallocationCSR() with MAT_NO_OFF_PROC_ENTRIES
...
Conflicts:
src/dm/impls/plex/examples/tests/ex12.c
show more ...
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| #
c90b701e
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| 14-Mar-2017 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'master' into knepley/feature-plex-pragmatic-parallel
* master: (1379 commits)
Minor fixes for tchem examples due to changes in PETSc infrastructure
update webpage about API changes
Merge branch 'master' into knepley/feature-plex-pragmatic-parallel
* master: (1379 commits)
Minor fixes for tchem examples due to changes in PETSc infrastructure
update webpage about API changes
add help menu for MatCreateSubMatricesMPI()
rename struct Mat_SubMat -> Mat_SubSppt
add a little information to the manual about using tchem
rename MatCreateSubMatrixComposite -> MatCreateSubMatrixVirtual; Mat_SubMatrix -> Mat_SubVirtual
need to protect the \ passed on the makefile on my Mac
Bib: Updated ref
update src/mat/examples/tests/output/ex23_#.out
rename MatGetSubMat -> MatCreateSubMat
Mark MatCreateMPIAIJWithSplitArrays() and MatMPIAIJSetPreallocationCSR() with MAT_NO_OFF_PROC_ENTRIES
superlu: libray is installed in PREFIX/lib64 - fix this to use PREFIX/lib
backport fixes cc105cc3 2b35c90a - required for 3bf428d - that was backported from master - 80c96bb
'echo -n' fails on opensolaris/osx - so avoid using it.
fix diffs in nightlybuilds due to options in ~/.petscrc
add Kelley03 to src/docs/tex/petsc.bib
build: determine moudles, mpi.h used during buildtime and print in 'info'
fix analyzer warnings
fix build failure on opensolaris - where -lm from flibs is removed due to -lm in cxxlibs. But then - only flib gets used for some configure tests [blaslapack, parms]
config: prefer __restrict over C99 restrict keyword
...
show more ...
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| #
72f1dcff
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| 13-Mar-2017 |
Satish Balay <balay@mcs.anl.gov> |
fix duplicate definitions warned by -Wredundant-decls
Also a bugfix? BLASdotu_ -> dotu
Reported-by: Till Martens <till.martens@dlr.de>
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| #
0e168440
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| 08-Mar-2017 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'master' of bitbucket.org:petsc/petsc
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| #
8cc6944d
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| 08-Mar-2017 |
Satish Balay <balay@mcs.anl.gov> |
Merge remote-tracking branch 'origin/hzhang/rename_matgetsubmats'
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| #
5c39f6d9
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| 07-Mar-2017 |
Hong Zhang <hzhang@mcs.anl.gov> |
rename struct Mat_SubMat -> Mat_SubSppt
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| #
7dae84e0
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| 07-Mar-2017 |
Hong Zhang <hzhang@mcs.anl.gov> |
rename MatGetSubMat -> MatCreateSubMat
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| #
c6a88246
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| 24-Feb-2017 |
Hong Zhang <hzhang@mcs.anl.gov> |
Merge branch 'hzhang/fix-getsubmats-reuse'
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| #
16b64355
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| 21-Feb-2017 |
Hong Zhang <hzhang@mcs.anl.gov> |
reorganize/rename MatDestroy_xxx_SubMatrices
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| #
171f813e
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| 15-Feb-2017 |
Toby Isaac <tisaac@uchicago.edu> |
Merge remote-tracking branch 'origin/knepley/feature-fe-dual-apply' into tisaac/feature-fe-dual-apply
* origin/knepley/feature-fe-dual-apply: (75 commits)
Plex: Screwed up last fix
Plex: Fix ove
Merge remote-tracking branch 'origin/knepley/feature-fe-dual-apply' into tisaac/feature-fe-dual-apply
* origin/knepley/feature-fe-dual-apply: (75 commits)
Plex: Screwed up last fix
Plex: Fix overeager protection of function
PetscFE: Fixed declaration
Travis-CI: Attempt to solve issues with gfortran
Travis-CI: Use newer macOS image
clarify damping and other issues related to SNESLINESEARCHBASIC
change example in new harness to use simple partitioner so gets consistent output on all systems
remove unused function from test file
cleanup formatting in example, plus myrank not rank
all requires need to go on the same line in test definition otherwise they are skipped
missing - makes the manual page formatting wrong
The developer manual clearly states that MPI_Comm_size() returns size it doesn't return numProcs or other nonsense. Pretty soon you'll start using mype instead of rank?
fix typo and cut and paste error in docs
bugfix for !HYPRE
fix warning for ';;'
may switch to scalable only when B->cmap->N > 100000
MatLRC: store in the context the parallel matrices rather than the sequential ones
Bib: Add ref
set default algorithm based on B->cmap->N for MatMatMult_MPIAIJ_MPIAIJ()
Error in VecScatterView_MPI() had the meaning of from and to backwards
...
show more ...
|
| #
c5eaf5f0
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| 14-Feb-2017 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/feature-plex-tests-new' into knepley/feature-fe-dual-apply
* knepley/feature-plex-tests-new: (73 commits)
Plex: Fix overeager protection of function
Travis-CI: Attempt to s
Merge branch 'knepley/feature-plex-tests-new' into knepley/feature-fe-dual-apply
* knepley/feature-plex-tests-new: (73 commits)
Plex: Fix overeager protection of function
Travis-CI: Attempt to solve issues with gfortran
Travis-CI: Use newer macOS image
clarify damping and other issues related to SNESLINESEARCHBASIC
change example in new harness to use simple partitioner so gets consistent output on all systems
remove unused function from test file
cleanup formatting in example, plus myrank not rank
all requires need to go on the same line in test definition otherwise they are skipped
missing - makes the manual page formatting wrong
The developer manual clearly states that MPI_Comm_size() returns size it doesn't return numProcs or other nonsense. Pretty soon you'll start using mype instead of rank?
fix typo and cut and paste error in docs
bugfix for !HYPRE
fix warning for ';;'
may switch to scalable only when B->cmap->N > 100000
MatLRC: store in the context the parallel matrices rather than the sequential ones
Bib: Add ref
set default algorithm based on B->cmap->N for MatMatMult_MPIAIJ_MPIAIJ()
Error in VecScatterView_MPI() had the meaning of from and to backwards
fix build warning as reported by the nightly tests
Update alquimia.py to use Glenn's branch that updates alquimia for pflotran xsdk
...
show more ...
|
| #
cffa9059
|
| 14-Feb-2017 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'master' into knepley/feature-plex-tests-new
* master: (94 commits)
Plex: Fix overeager protection of function
Travis-CI: Attempt to solve issues with gfortran
Travis-CI: Use newe
Merge branch 'master' into knepley/feature-plex-tests-new
* master: (94 commits)
Plex: Fix overeager protection of function
Travis-CI: Attempt to solve issues with gfortran
Travis-CI: Use newer macOS image
clarify damping and other issues related to SNESLINESEARCHBASIC
change example in new harness to use simple partitioner so gets consistent output on all systems
remove unused function from test file
cleanup formatting in example, plus myrank not rank
missing - makes the manual page formatting wrong
The developer manual clearly states that MPI_Comm_size() returns size it doesn't return numProcs or other nonsense. Pretty soon you'll start using mype instead of rank?
fix typo and cut and paste error in docs
bugfix for !HYPRE
fix warning for ';;'
may switch to scalable only when B->cmap->N > 100000
MatLRC: store in the context the parallel matrices rather than the sequential ones
Bib: Add ref
set default algorithm based on B->cmap->N for MatMatMult_MPIAIJ_MPIAIJ()
Error in VecScatterView_MPI() had the meaning of from and to backwards
fix build warning as reported by the nightly tests
Update alquimia.py to use Glenn's branch that updates alquimia for pflotran xsdk
fix divide by zero exposed by 8534686b5096cd4c91a8f3895408b386c0628431 - and produced by petsc4py testsuite
...
Conflicts:
src/dm/impls/plex/examples/tests/ex13.c
src/dm/impls/plex/plexgmsh.c
src/snes/examples/tests/ex2.c
src/snes/examples/tests/output/ex2_3.out
src/snes/examples/tests/output/ex2_4.out
src/snes/examples/tests/output/ex2_5.out
show more ...
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| #
7962258a
|
| 10-Feb-2017 |
Scott Kruger <scott.e.kruger@gmail.com> |
Merge branch 'master' into scott/test-harness-forloopfix
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| #
eb54a165
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| 09-Feb-2017 |
Hong Zhang <hzhang@mcs.anl.gov> |
Merge branch 'hzhang/opt-matgetsubmatrices-mpibaij'
|
| #
afb3cbd8
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| 06-Feb-2017 |
Hong Zhang <hzhang@mcs.anl.gov> |
fix warnigns reported by nightly tests
|
| #
809b304d
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| 26-Jan-2017 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'master' of bitbucket.org:petsc/petsc
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| #
96fc66b7
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| 26-Jan-2017 |
Matthew G. Knepley <knepley@gmail.com> |
Merge remote-tracking branch 'origin/test-harness-replacefix' into knepley/feature-plex-tests-new
* origin/test-harness-replacefix:
Enable replace when file does not exist
Regenerate test harnes
Merge remote-tracking branch 'origin/test-harness-replacefix' into knepley/feature-plex-tests-new
* origin/test-harness-replacefix:
Enable replace when file does not exist
Regenerate test harness if sources change
bugfix for MatGetSubmatrices_MPIAIJ() Reported-by: Matthew Knepley
show more ...
|
| #
03e8432d
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| 25-Jan-2017 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'master' into knepley/feature-plex-tests-new
* master: (37 commits)
fortran: include petscversion.h
test: c++ pipeline build fix for d2a797cfef64a79a330b420f01b2d605a8acc690
Extra
Merge branch 'master' into knepley/feature-plex-tests-new
* master: (37 commits)
fortran: include petscversion.h
test: c++ pipeline build fix for d2a797cfef64a79a330b420f01b2d605a8acc690
Extract the submatrices
Convert C Null pointer to Fortran in Fortran stub before passing back to user
PC Galekin and KSP should properly propagate calls to SetFromOptions to subsolvers
Converted Fortran PetscSF to Fortran type, added PETSC_NULL_SF
clarification in documentation
Update of petscdiff and associated harness hooks
Fixup more F90 interface definitions for users
More space-in-dirname enabling quotes
Enable paths with spaces
add cast; bugfix for 64bit
Typo -- initialized TESTFLAGS to -v by mistake
Adding new options to test framework
gtest: add valgrind support [when PETSC_ARCH has 'valgrind' in the name]
bugfix for unsorted ISCols
optimize matgetsubmatrices_mpiaij to use only one MPI_AllReduce
small cleanup MatGetSubMatrices_MPIAIJ_Local()
rm allcolumns from the input of MatGetSubmatrices_mpiaij_local()
add a test to ex4.c for reuse
...
show more ...
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| #
17df9f7c
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| 25-Jan-2017 |
Hong Zhang <hzhang@mcs.anl.gov> |
optimize MatGetSubMatrices_MPIBAIJ() -- works for bs=1 now
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| #
e8e596da
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| 25-Jan-2017 |
Hong Zhang <hzhang@mcs.anl.gov> |
Merge branch 'hzhang/fix-matgetsubmatrices-mpiaij'
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| #
77b65b27
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| 23-Jan-2017 |
Hong Zhang <hzhang@mcs.anl.gov> |
bugfix for MatGetSubmatrices_MPIAIJ()
Reported-by: Matthew Knepley
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| #
dc84b4d1
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| 20-Jan-2017 |
Hong Zhang <hzhang@mcs.anl.gov> |
Merge branch 'hzhang/opt-matgetsubmatrices-mpiaij'
|