| #
833b33c1
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| 29-May-2020 |
Satish Balay <balay@mcs.anl.gov> |
Merge branch 'stefanozampini/feature-add-hpackages-rebased' into 'master'
Fixes to MatProduct + many bug fixes + new hierarchical matrix support
See merge request petsc/petsc!2800
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| #
6718818e
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| 17-May-2020 |
Stefano Zampini <stefano.zampini@gmail.com> |
MatProduct: proper cleanup of additional data structure
Do not mess with view/destroy routine, add an extra slot to MatProduct struct to stash the data, destroy/view routines
Deprecate MatFreeInterm
MatProduct: proper cleanup of additional data structure
Do not mess with view/destroy routine, add an extra slot to MatProduct struct to stash the data, destroy/view routines
Deprecate MatFreeIntermediateStructures in favor of MatProductClear
Clean up base headers for matrix classes
Update tests (remove some todos from ex70 because now the tests work properly)
MatProductSetType should not set the setfromoptions operation!
MatProductClear should reset operations
Remove no longer needed function composition
Add few more PetscInfo messages
Single dispatch routine
MatProductSetFromOptions routines are now allowed to fail
MatProductSetFromOptions_SeqXBAIJ_SeqDense: support for MATPRODUCT_AtB
MatTransposeMatMultNumeric_SeqAIJ_SeqDense: fix bug with leading dimensions
Make internal functions PETSC_INTERN
Fix a couple of places where the destroy routine of the matrix was changed
Products should all use internal data (or composed data attached to the internal data)
Fix few bugs in MPIAIJ_MPIDENSE product with stages
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| #
5b8888ca
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| 21-Mar-2020 |
Satish Balay <balay@mcs.anl.gov> |
Merge remote-tracking branch 'origin/hzhng/matproduct-api'
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| #
4222ddf1
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| 13-Jan-2020 |
Hong Zhang <hzhang@mcs.anl.gov> |
This branch reorganizes the API of mat-mat operations: A*B, At*B, A*Bt, PtAP, RARt, A*B*C
- See matproduct.c for detailed description of new API
- removed API function XXXSymbolic() and XXXNumeric()
This branch reorganizes the API of mat-mat operations: A*B, At*B, A*Bt, PtAP, RARt, A*B*C
- See matproduct.c for detailed description of new API
- removed API function XXXSymbolic() and XXXNumeric()
- removed subroutines MatMatMult_xxx, MatPtAP_xxx, ...
- modified MatxxxSymbolic_XXX() prototype (product is an input now)
- selection of algorithm is in MatProductSetFromOptions_xxx()
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| #
89a764d9
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| 07-Nov-2019 |
Satish Balay <balay@mcs.anl.gov> |
Merge branch 'rmills/wip-fix-mattest-ex115-for-seqaijmkl' into 'master'
Fixes enabling MATSEQAIJMKL to use composed functions for AIJ-HYPRE operations.
See merge request petsc/petsc!2246
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| #
d248a85c
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| 07-Nov-2019 |
Richard Tran Mills <rmills@rmills.org> |
Fixes enabling MATSEQAIJMKL to use composed functions for AIJ-HYPRE operations.
Without these fixes, ex115 in the matrix tests fails when running with -mat_seqaij_type seqaijmkl
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| #
b32b15be
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| 25-Sep-2019 |
Satish Balay <balay@mcs.anl.gov> |
Merge branch 'rmills/fix-aijmkl-help' into 'master'
Changed MATAIJMKL help messages to be more informative.
See merge request petsc/petsc!2094
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| #
48292275
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| 24-Sep-2019 |
Richard Tran Mills <rmills@rmills.org> |
Changed MATAIJMKL help messages to be more informative.
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| #
5c4b051a
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| 10-Jul-2019 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'barry/no-batch-script'
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| #
b9e7e5c1
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| 21-Jun-2019 |
Barry Smith <bsmith@mcs.anl.gov> |
No more batch submission script; this is all due to a very smart idea of Lisandro Dalcin
*) removed or fixed all remaining --know-xx options that required a batch submission script
*) removed all de
No more batch submission script; this is all due to a very smart idea of Lisandro Dalcin
*) removed or fixed all remaining --know-xx options that required a batch submission script
*) removed all details of --known-size-- that are no longer needed
*) cleaned up BAIJMKL source code, made it work with the rest of PETSc and removed is
dependence on a batch submission script, added test case for BAIJMKL
*) update the installation guide on batsch submissions and OpenMP
*) print MKL version, print OpenMP usage with mkl_sparse options
Commit-type: bug-fix, portability-fix, style-fix, feature, documentation, example
Thanks-to: Lisandro Dalcin <dalcinl@gmail.com>
$ ./configure --with-batch
===============================================================================
Configuring PETSc to compile on your system
===============================================================================
=============================================================================== ***** WARNING: Cannot determine if MPI_INT64_T works on your system in batch-mode! Assuming it does work. Run with --known-mpi-int64_t=0 if you know it does not work (very unlikely). Run with --known-mpi-int64_t=1 to remove this warning message. warning message ***** =============================================================================== =============================================================================== ***** WARNING: Cannot determine if MPI_C_DOUBLE_COMPLEX works on your system in batch-mode! Assuming it does work. Run with --known-mpi-c-double-complex=0 if you know it does not work (very unlikely). Run with --known-mpi-c-double-complex=1 to remove this warning message. warning message ***** =============================================================================== =============================================================================== ***** WARNING: Cannot verify that MPI is a shared library - in batch-mode! If MPI is a static library but linked into multiple shared libraries that the application uses, sometimes compiles work - but one might get run-time errors. If you know that the MPI library is shared - run with --known-mpi-shared-libraries=1 option to remove this warning message ***** =============================================================================== =============================================================================== ***** WARNING: Cannot determine if BLAS/LAPACK uses 32 bit or 64 bit integers in batch-mode! Assuming 32 bit integers. Run with --known-64-bit-blas-indices if you know they are 64 bit. Run with --known-64-bit-blas-indices=0 to remove this warning message. warning message ***** ===============================================================================
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| #
89583661
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| 21-Jun-2019 |
Satish Balay <balay@mcs.anl.gov> |
Merge remote-tracking branch 'origin/barry/add-petscarrayxxx-ops' [PR #1771]
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| #
580bdb30
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| 07-Jun-2019 |
Barry Smith <bsmith@mcs.anl.gov> |
Add PetscArraycmp(), PetscArraycpy(), PetscArrayzero(), PetscArraymove(), update code to use new forms
Replace a couple multi-mallocs with a single malloc
Replace backwards loops in MatSetValues_*()
Add PetscArraycmp(), PetscArraycpy(), PetscArrayzero(), PetscArraymove(), update code to use new forms
Replace a couple multi-mallocs with a single malloc
Replace backwards loops in MatSetValues_*() with PetscArraymove()
Commit-type: style-fix, feature
show more ...
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| #
613bfe33
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| 02-Jun-2019 |
BarryFSmith <bsmith@mcs.anl.gov> |
Merged in barry/update-collective-on (pull request #1744)
Update the use of Collective on in the manual pages to reflect the new style
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| #
d083f849
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| 01-Jun-2019 |
Barry Smith <bsmith@mcs.anl.gov> |
Update the use of Collective on in the manual pages to reflect the new style
Commit-type: style-fix, documentation
Thanks-to: Patrick Sanan <patrick.sanan@gmail.com>
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| #
fa54792a
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| 29-May-2019 |
Patrick Sanan <patrick.sanan@gmail.com> |
Merged in psanan/man-pages-remove-keywords (pull request #1717)
Man pages: Remove .keywords fields
Approved-by: BarryFSmith <bsmith@mcs.anl.gov>
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| #
bfcb38ea
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| 27-May-2019 |
Patrick Sanan <patrick.sanan@gmail.com> |
Man pages: remove .keywords: fields
This field is recognized by doctext from Sowing (http://wgropp.cs.illinois.edu/projects/software/sowing/doctext/node20.htm#Node20),
but it doesn't seem to be unif
Man pages: remove .keywords: fields
This field is recognized by doctext from Sowing (http://wgropp.cs.illinois.edu/projects/software/sowing/doctext/node20.htm#Node20),
but it doesn't seem to be uniformly used or maintained.
Thus, remove all .keywords: fields, and a following blank line, if present.
This is accomplished with GNU sed (gsed on OS X), with the following commands.
*Warning* that this type of command can corrupt a .git directory,
so be cautious in reusing or modifying these commands. They first look
for and delete matching lines with a following line consisting of only whitespace,
and then delete any remaining matching lines.
find src/ -type f -exec gsed -i '/keywords:/ {N; /\n\s*$/d}' {} +
find src/ -type f -exec gsed -i '/keywords:/d' {} +
find include/ -type f -exec gsed -i '/keywords:/ {N; /\n\s*$/d}' {} +
find include/ -type f -exec gsed -i '/keywords:/d' {} +
Hints on the sed command obtained from: https://unix.stackexchange.com/questions/100754/how-to-delete-a-specific-line-and-the-following-blank-line-using-gnu-sed
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| #
b0f52d29
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| 28-Jan-2019 |
Joseph Pusztay <josephpusztay@Josephs-MacBook-Pro.local> |
Merge branch 'master' into jpusztay/feature-swarm-symplectic-example
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| #
940dfb0a
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| 28-Jan-2019 |
Joseph Pusztay <josephpu@buffalo.edu> |
Merged petsc/petsc into master
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| #
30faf514
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| 27-Jan-2019 |
m_diehl <m.diehl@mpie.de> |
Merged petsc/petsc into master
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| #
ddad275a
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| 21-Jan-2019 |
Patrick Farrell <patrick@pefarrell.org> |
Merge branch 'master' into knepley/feature-snes-patch
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| #
c9141704
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| 27-Dec-2018 |
Pierre Jolivet <pierre.jolivet@enseeiht.fr> |
Merged petsc/petsc into master
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| #
66b342c2
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| 26-Dec-2018 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'master' of bitbucket.org:petsc/petsc
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| #
6587a614
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| 26-Dec-2018 |
Karl Rupp <me@karlrupp.net> |
Merge branch 'rmills/refactor-mkl-sparse-optimize-configure/maint' into maint [PR #1288]
* rmills/refactor-mkl-sparse-optimize-configure/maint:
This branch eliminates the separate configure package
Merge branch 'rmills/refactor-mkl-sparse-optimize-configure/maint' into maint [PR #1288]
* rmills/refactor-mkl-sparse-optimize-configure/maint:
This branch eliminates the separate configure package testing for mkl_sparse_sp2m(), rolling a test for a usable version of this feature into the mkl_sparse_optimize configure package.
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| #
3acd07dd
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| 26-Dec-2018 |
Karl Rupp <me@karlrupp.net> |
Merge branch 'rmills/refactor-mkl-sparse-optimize-configure/maint' [PR #1288]
* rmills/refactor-mkl-sparse-optimize-configure/maint:
This branch eliminates the separate configure package testing for
Merge branch 'rmills/refactor-mkl-sparse-optimize-configure/maint' [PR #1288]
* rmills/refactor-mkl-sparse-optimize-configure/maint:
This branch eliminates the separate configure package testing for mkl_sparse_sp2m(), rolling a test for a usable version of this feature into the mkl_sparse_optimize configure package.
show more ...
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| #
8a369200
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| 21-Dec-2018 |
Richard Tran Mills <rmills@rmills.org> |
Use PETSC_HAVE_MKL_SPARSE_SP2M_FEATURE in the AIJMKL code.
|