| #
579148ee
|
| 12-Nov-2017 |
Satish Balay <balay@mcs.anl.gov> |
Merge remote-tracking branch 'origin/jed/variadic-malloc'
|
| #
2cd485c2
|
| 30-Oct-2017 |
Barry Smith <bsmith@mcs.anl.gov> |
Simplify PetscFree() calls on const pointers; no longer require additional variables
Commit-type: style-fix
Thanks-to: Jed Brown <jed@jedbrown.org>
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| #
f489ac74
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| 30-Oct-2017 |
Barry Smith <bsmith@mcs.anl.gov> |
Fixes for use of PetscMallocN() with const type input
Microsoft compilers warn about incompatiblity between pointers passed to new PetscMallocA() function
Commit-type: portability-fix, testing-fix
Fixes for use of PetscMallocN() with const type input
Microsoft compilers warn about incompatiblity between pointers passed to new PetscMallocA() function
Commit-type: portability-fix, testing-fix
Reported-by: nightly tests
show more ...
|
| #
3457812c
|
| 05-Aug-2017 |
Satish Balay <balay@mcs.anl.gov> |
Merge remote-tracking branch 'origin/hzhang/reorg-matdestroysubmats'
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| #
f68bb481
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| 03-Aug-2017 |
Hong Zhang <hzhang@mcs.anl.gov> |
rename
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| #
ec14d8c8
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| 27-May-2017 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'master' into knepley/feature-plex-sphere-mesh
* master: (2633 commits)
Bib: Added ref
SNES ex56: Update test output
add a citation to petsc.bib
Plex: Initialize variables
ini
Merge branch 'master' into knepley/feature-plex-sphere-mesh
* master: (2633 commits)
Bib: Added ref
SNES ex56: Update test output
add a citation to petsc.bib
Plex: Initialize variables
initialize ap as complained by the nightly tests
Plex ex3: Update to new point function API
initialize some variables as complained by nightly tests
SNES ex12: Mix misnaming Nf --> Nc
update tests
add tests
add MatView_SeqXAIJ_ASCII_structonly(); enable A->structure_only in MatSetValuesBlocked_SeqBAIJ
typo
fill-in some references
Bib: Fixed ref
Plex: Added PLY to file support
Plex: Adding PLY support
PetscDS: Turn off Fortran bindings for Constants
Plex tests: Updated to new point function API
SNES ex56: Moved tests to new format
DM: Allow field projection functions to take an array of scalars - This will allow us to pass in user data to kernels without void *, more efficiency than aux fields
...
Conflicts:
config/builder.py
include/petscdmplex.h
src/dm/impls/plex/examples/tests/ex1.c
src/dm/impls/plex/plexcreate.c
src/dm/impls/plex/plexgmsh.c
src/snes/examples/tutorials/ex63.c
show more ...
|
| #
a166d259
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| 15-Mar-2017 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/fix-plex-example-logging' into knepley/feature-plex-torus
* knepley/fix-plex-example-logging: (151 commits)
Plex ex12: Added logging stages
Plex ex1: Added logging stages
Merge branch 'knepley/fix-plex-example-logging' into knepley/feature-plex-torus
* knepley/fix-plex-example-logging: (151 commits)
Plex ex12: Added logging stages
Plex ex1: Added logging stages
update to latest hypre tag on github
fix 'inf' vs 'Inf' diff wrt vec_vec_utils_tagger_tutorials-ex1_8,9,18,19
MatSetOption(mat,MAT_IGNORE_ZERO_ENTRIES,PETSC_TRUE) no longer applies to zero values set or added to the matrix diagonal, they are now not ignored and are included in the matrix nonzero structure. This is useful for Jacobians passed to TS.
replace use/mention of depreciated -log_summary in many places
add extchem.py which was written years ago but never put in the distribution (hence it is broken).
petsc4py: update to snapshot with MatGetSubMatrices -> MatCreateSubMatrices etc API changes
Minor fixes for tchem examples due to changes in PETSc infrastructure
update webpage about API changes
add help menu for MatCreateSubMatricesMPI()
PetscCMPLX: assume type punning is safe
rename struct Mat_SubMat -> Mat_SubSppt
add a little information to the manual about using tchem
rename MatCreateSubMatrixComposite -> MatCreateSubMatrixVirtual; Mat_SubMatrix -> Mat_SubVirtual
need to protect the \ passed on the makefile on my Mac
Bib: Updated ref
update src/mat/examples/tests/output/ex23_#.out
rename MatGetSubMat -> MatCreateSubMat
Mark MatCreateMPIAIJWithSplitArrays() and MatMPIAIJSetPreallocationCSR() with MAT_NO_OFF_PROC_ENTRIES
...
Conflicts:
src/dm/impls/plex/examples/tests/ex1.c
src/dm/impls/plex/examples/tests/ex12.c
show more ...
|
| #
851d29aa
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| 15-Mar-2017 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/fix-plex-example-logging' into knepley/feature-plex-tests-new
* knepley/fix-plex-example-logging: (151 commits)
Plex ex12: Added logging stages
Plex ex1: Added logging stag
Merge branch 'knepley/fix-plex-example-logging' into knepley/feature-plex-tests-new
* knepley/fix-plex-example-logging: (151 commits)
Plex ex12: Added logging stages
Plex ex1: Added logging stages
update to latest hypre tag on github
fix 'inf' vs 'Inf' diff wrt vec_vec_utils_tagger_tutorials-ex1_8,9,18,19
MatSetOption(mat,MAT_IGNORE_ZERO_ENTRIES,PETSC_TRUE) no longer applies to zero values set or added to the matrix diagonal, they are now not ignored and are included in the matrix nonzero structure. This is useful for Jacobians passed to TS.
replace use/mention of depreciated -log_summary in many places
add extchem.py which was written years ago but never put in the distribution (hence it is broken).
petsc4py: update to snapshot with MatGetSubMatrices -> MatCreateSubMatrices etc API changes
Minor fixes for tchem examples due to changes in PETSc infrastructure
update webpage about API changes
add help menu for MatCreateSubMatricesMPI()
PetscCMPLX: assume type punning is safe
rename struct Mat_SubMat -> Mat_SubSppt
add a little information to the manual about using tchem
rename MatCreateSubMatrixComposite -> MatCreateSubMatrixVirtual; Mat_SubMatrix -> Mat_SubVirtual
need to protect the \ passed on the makefile on my Mac
Bib: Updated ref
update src/mat/examples/tests/output/ex23_#.out
rename MatGetSubMat -> MatCreateSubMat
Mark MatCreateMPIAIJWithSplitArrays() and MatMPIAIJSetPreallocationCSR() with MAT_NO_OFF_PROC_ENTRIES
...
Conflicts:
src/dm/impls/plex/examples/tests/ex12.c
show more ...
|
| #
c90b701e
|
| 14-Mar-2017 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'master' into knepley/feature-plex-pragmatic-parallel
* master: (1379 commits)
Minor fixes for tchem examples due to changes in PETSc infrastructure
update webpage about API changes
Merge branch 'master' into knepley/feature-plex-pragmatic-parallel
* master: (1379 commits)
Minor fixes for tchem examples due to changes in PETSc infrastructure
update webpage about API changes
add help menu for MatCreateSubMatricesMPI()
rename struct Mat_SubMat -> Mat_SubSppt
add a little information to the manual about using tchem
rename MatCreateSubMatrixComposite -> MatCreateSubMatrixVirtual; Mat_SubMatrix -> Mat_SubVirtual
need to protect the \ passed on the makefile on my Mac
Bib: Updated ref
update src/mat/examples/tests/output/ex23_#.out
rename MatGetSubMat -> MatCreateSubMat
Mark MatCreateMPIAIJWithSplitArrays() and MatMPIAIJSetPreallocationCSR() with MAT_NO_OFF_PROC_ENTRIES
superlu: libray is installed in PREFIX/lib64 - fix this to use PREFIX/lib
backport fixes cc105cc3 2b35c90a - required for 3bf428d - that was backported from master - 80c96bb
'echo -n' fails on opensolaris/osx - so avoid using it.
fix diffs in nightlybuilds due to options in ~/.petscrc
add Kelley03 to src/docs/tex/petsc.bib
build: determine moudles, mpi.h used during buildtime and print in 'info'
fix analyzer warnings
fix build failure on opensolaris - where -lm from flibs is removed due to -lm in cxxlibs. But then - only flib gets used for some configure tests [blaslapack, parms]
config: prefer __restrict over C99 restrict keyword
...
show more ...
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| #
0e168440
|
| 08-Mar-2017 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'master' of bitbucket.org:petsc/petsc
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| #
8cc6944d
|
| 08-Mar-2017 |
Satish Balay <balay@mcs.anl.gov> |
Merge remote-tracking branch 'origin/hzhang/rename_matgetsubmats'
|
| #
5c39f6d9
|
| 07-Mar-2017 |
Hong Zhang <hzhang@mcs.anl.gov> |
rename struct Mat_SubMat -> Mat_SubSppt
|
| #
7dae84e0
|
| 07-Mar-2017 |
Hong Zhang <hzhang@mcs.anl.gov> |
rename MatGetSubMat -> MatCreateSubMat
|
| #
c6a88246
|
| 24-Feb-2017 |
Hong Zhang <hzhang@mcs.anl.gov> |
Merge branch 'hzhang/fix-getsubmats-reuse'
|
| #
c67fe082
|
| 23-Feb-2017 |
Hong Zhang <hzhang@mcs.anl.gov> |
cleanup
|
| #
006cef31
|
| 23-Feb-2017 |
Hong Zhang <hzhang@mcs.anl.gov> |
bugfix for memory error as reported by nightly tests
|
| #
4698041c
|
| 21-Feb-2017 |
Hong Zhang <hzhang@mcs.anl.gov> |
fixbug for MPIBAIJ
|
| #
16b64355
|
| 21-Feb-2017 |
Hong Zhang <hzhang@mcs.anl.gov> |
reorganize/rename MatDestroy_xxx_SubMatrices
|
| #
df750dc8
|
| 17-Feb-2017 |
Hong Zhang <hzhang@mcs.anl.gov> |
add MatDestroySubMatrices(); bugfix
|
| #
171f813e
|
| 15-Feb-2017 |
Toby Isaac <tisaac@uchicago.edu> |
Merge remote-tracking branch 'origin/knepley/feature-fe-dual-apply' into tisaac/feature-fe-dual-apply
* origin/knepley/feature-fe-dual-apply: (75 commits)
Plex: Screwed up last fix
Plex: Fix ove
Merge remote-tracking branch 'origin/knepley/feature-fe-dual-apply' into tisaac/feature-fe-dual-apply
* origin/knepley/feature-fe-dual-apply: (75 commits)
Plex: Screwed up last fix
Plex: Fix overeager protection of function
PetscFE: Fixed declaration
Travis-CI: Attempt to solve issues with gfortran
Travis-CI: Use newer macOS image
clarify damping and other issues related to SNESLINESEARCHBASIC
change example in new harness to use simple partitioner so gets consistent output on all systems
remove unused function from test file
cleanup formatting in example, plus myrank not rank
all requires need to go on the same line in test definition otherwise they are skipped
missing - makes the manual page formatting wrong
The developer manual clearly states that MPI_Comm_size() returns size it doesn't return numProcs or other nonsense. Pretty soon you'll start using mype instead of rank?
fix typo and cut and paste error in docs
bugfix for !HYPRE
fix warning for ';;'
may switch to scalable only when B->cmap->N > 100000
MatLRC: store in the context the parallel matrices rather than the sequential ones
Bib: Add ref
set default algorithm based on B->cmap->N for MatMatMult_MPIAIJ_MPIAIJ()
Error in VecScatterView_MPI() had the meaning of from and to backwards
...
show more ...
|
| #
c5eaf5f0
|
| 14-Feb-2017 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/feature-plex-tests-new' into knepley/feature-fe-dual-apply
* knepley/feature-plex-tests-new: (73 commits)
Plex: Fix overeager protection of function
Travis-CI: Attempt to s
Merge branch 'knepley/feature-plex-tests-new' into knepley/feature-fe-dual-apply
* knepley/feature-plex-tests-new: (73 commits)
Plex: Fix overeager protection of function
Travis-CI: Attempt to solve issues with gfortran
Travis-CI: Use newer macOS image
clarify damping and other issues related to SNESLINESEARCHBASIC
change example in new harness to use simple partitioner so gets consistent output on all systems
remove unused function from test file
cleanup formatting in example, plus myrank not rank
all requires need to go on the same line in test definition otherwise they are skipped
missing - makes the manual page formatting wrong
The developer manual clearly states that MPI_Comm_size() returns size it doesn't return numProcs or other nonsense. Pretty soon you'll start using mype instead of rank?
fix typo and cut and paste error in docs
bugfix for !HYPRE
fix warning for ';;'
may switch to scalable only when B->cmap->N > 100000
MatLRC: store in the context the parallel matrices rather than the sequential ones
Bib: Add ref
set default algorithm based on B->cmap->N for MatMatMult_MPIAIJ_MPIAIJ()
Error in VecScatterView_MPI() had the meaning of from and to backwards
fix build warning as reported by the nightly tests
Update alquimia.py to use Glenn's branch that updates alquimia for pflotran xsdk
...
show more ...
|
| #
cffa9059
|
| 14-Feb-2017 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'master' into knepley/feature-plex-tests-new
* master: (94 commits)
Plex: Fix overeager protection of function
Travis-CI: Attempt to solve issues with gfortran
Travis-CI: Use newe
Merge branch 'master' into knepley/feature-plex-tests-new
* master: (94 commits)
Plex: Fix overeager protection of function
Travis-CI: Attempt to solve issues with gfortran
Travis-CI: Use newer macOS image
clarify damping and other issues related to SNESLINESEARCHBASIC
change example in new harness to use simple partitioner so gets consistent output on all systems
remove unused function from test file
cleanup formatting in example, plus myrank not rank
missing - makes the manual page formatting wrong
The developer manual clearly states that MPI_Comm_size() returns size it doesn't return numProcs or other nonsense. Pretty soon you'll start using mype instead of rank?
fix typo and cut and paste error in docs
bugfix for !HYPRE
fix warning for ';;'
may switch to scalable only when B->cmap->N > 100000
MatLRC: store in the context the parallel matrices rather than the sequential ones
Bib: Add ref
set default algorithm based on B->cmap->N for MatMatMult_MPIAIJ_MPIAIJ()
Error in VecScatterView_MPI() had the meaning of from and to backwards
fix build warning as reported by the nightly tests
Update alquimia.py to use Glenn's branch that updates alquimia for pflotran xsdk
fix divide by zero exposed by 8534686b5096cd4c91a8f3895408b386c0628431 - and produced by petsc4py testsuite
...
Conflicts:
src/dm/impls/plex/examples/tests/ex13.c
src/dm/impls/plex/plexgmsh.c
src/snes/examples/tests/ex2.c
src/snes/examples/tests/output/ex2_3.out
src/snes/examples/tests/output/ex2_4.out
src/snes/examples/tests/output/ex2_5.out
show more ...
|
| #
7962258a
|
| 10-Feb-2017 |
Scott Kruger <scott.e.kruger@gmail.com> |
Merge branch 'master' into scott/test-harness-forloopfix
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| #
cc7fa4f4
|
| 10-Feb-2017 |
Hong Zhang <hzhang@mcs.anl.gov> |
Merge branch 'hzhang/opt-matgetsubmatrices-mpibaij'
|
| #
96cff833
|
| 10-Feb-2017 |
Hong Zhang <hzhang@mcs.anl.gov> |
fix warning for ';;'
|