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cffa9059
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| 14-Feb-2017 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'master' into knepley/feature-plex-tests-new
* master: (94 commits)
Plex: Fix overeager protection of function
Travis-CI: Attempt to solve issues with gfortran
Travis-CI: Use newe
Merge branch 'master' into knepley/feature-plex-tests-new
* master: (94 commits)
Plex: Fix overeager protection of function
Travis-CI: Attempt to solve issues with gfortran
Travis-CI: Use newer macOS image
clarify damping and other issues related to SNESLINESEARCHBASIC
change example in new harness to use simple partitioner so gets consistent output on all systems
remove unused function from test file
cleanup formatting in example, plus myrank not rank
missing - makes the manual page formatting wrong
The developer manual clearly states that MPI_Comm_size() returns size it doesn't return numProcs or other nonsense. Pretty soon you'll start using mype instead of rank?
fix typo and cut and paste error in docs
bugfix for !HYPRE
fix warning for ';;'
may switch to scalable only when B->cmap->N > 100000
MatLRC: store in the context the parallel matrices rather than the sequential ones
Bib: Add ref
set default algorithm based on B->cmap->N for MatMatMult_MPIAIJ_MPIAIJ()
Error in VecScatterView_MPI() had the meaning of from and to backwards
fix build warning as reported by the nightly tests
Update alquimia.py to use Glenn's branch that updates alquimia for pflotran xsdk
fix divide by zero exposed by 8534686b5096cd4c91a8f3895408b386c0628431 - and produced by petsc4py testsuite
...
Conflicts:
src/dm/impls/plex/examples/tests/ex13.c
src/dm/impls/plex/plexgmsh.c
src/snes/examples/tests/ex2.c
src/snes/examples/tests/output/ex2_3.out
src/snes/examples/tests/output/ex2_4.out
src/snes/examples/tests/output/ex2_5.out
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7962258a
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| 10-Feb-2017 |
Scott Kruger <scott.e.kruger@gmail.com> |
Merge branch 'master' into scott/test-harness-forloopfix
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eb54a165
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| 09-Feb-2017 |
Hong Zhang <hzhang@mcs.anl.gov> |
Merge branch 'hzhang/opt-matgetsubmatrices-mpibaij'
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c9ffca76
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| 02-Feb-2017 |
Hong Zhang <hzhang@mcs.anl.gov> |
rename MatGetSubMatrices_MPIBAIJ_local_new -> MatGetSubMatrices_MPIBAIJ_local
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| #
121971b2
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| 02-Feb-2017 |
Hong Zhang <hzhang@mcs.anl.gov> |
rename MatGetSubMatrices_MPIBAIJ_local -> MatGetSubMatrices_MPIBAIJ_local_old
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| #
80d31651
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| 01-Feb-2017 |
Hong Zhang <hzhang@mcs.anl.gov> |
unsorted column IS works now
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| #
8761c3d6
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| 31-Jan-2017 |
Hong Zhang <hzhang@mcs.anl.gov> |
bugfix for MatCreateRedundantMatrix(), MatCreateMPIMatConcatenateSeqMat()
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| #
17df9f7c
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| 25-Jan-2017 |
Hong Zhang <hzhang@mcs.anl.gov> |
optimize MatGetSubMatrices_MPIBAIJ() -- works for bs=1 now
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| #
9137bce6
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| 24-Dec-2016 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'barry/remove-funct'
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| #
b90ca41c
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| 24-Dec-2016 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'barry/fix-matreuse'
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| #
cf37664f
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| 23-Dec-2016 |
Barry Smith <bsmith@mcs.anl.gov> |
Add more error checks for use of MatReuse; change MatTranspose() to use MatReuse as used by other functions
Time: 2.5 hours
Reported-by: Stefano Zampini <stefano.zampini@gmail.com>, Eric Chamberlan
Add more error checks for use of MatReuse; change MatTranspose() to use MatReuse as used by other functions
Time: 2.5 hours
Reported-by: Stefano Zampini <stefano.zampini@gmail.com>, Eric Chamberland <Eric.Chamberland@giref.ulaval.ca>
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| #
fbfcfee5
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| 19-Dec-2016 |
Barry Smith <bsmith@mcs.anl.gov> |
Remove the use and definition of __FUNCT__ throughout the code
Since all modern C/C++ compilers provide this functionality we no longer need to provide it manually in PETSc
Time: 1.5 hours
Thanks-t
Remove the use and definition of __FUNCT__ throughout the code
Since all modern C/C++ compilers provide this functionality we no longer need to provide it manually in PETSc
Time: 1.5 hours
Thanks-to: Andreas Mang <andreas@ices.utexas.edu>
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| #
8f47d70b
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| 15-Dec-2016 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'stefano_zampini/allow-late-matsetblocksizes'
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| #
af6579a0
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| 09-Dec-2016 |
Hong Zhang <hzhang@mcs.anl.gov> |
Merge branch 'hzhang/opt-matgetsubmatrices-rebased-v2'
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04404b52
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| 08-Dec-2016 |
stefano_zampini <stefano.zampini@gmail.com> |
Merge branch 'stefano_zampini/fix-mathypre-notpreallocated'
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| #
c10200c1
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| 09-Sep-2016 |
Hong Zhang <hzhang@mcs.anl.gov> |
implement MatGetSubMatrices_MPIAIJ_single() to optimize MatGetSubMatrices_MPIAIJ() when ismax = 1
update src/mat/examples/tests/ex4.c for testing MatGetSubMatrices()
introduce ctable to remove nons
implement MatGetSubMatrices_MPIAIJ_single() to optimize MatGetSubMatrices_MPIAIJ() when ismax = 1
update src/mat/examples/tests/ex4.c for testing MatGetSubMatrices()
introduce ctable to remove nonscalable malloc C->rmap->N array for MatIncreaseOverlap_MPIAIJ_Once()
remove nonscalable d_p by using ctable
add MAT_SUBMAT_SINGLEIS to MatOption. Set this flag in PCSetUp_ASM() to
reduce MPI_AllReduce() in MatGetSubMatrices()
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| #
7ea3e4ca
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| 28-Nov-2016 |
stefano_zampini <stefano.zampini@gmail.com> |
Compose new matrix conversion from (MPI)BAIJ to MatHYPRE
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| #
cf617b72
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| 10-Nov-2016 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'maint'
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| #
abf3b562
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| 10-Nov-2016 |
Barry Smith <bsmith@mcs.anl.gov> |
Bug fixes for MAT_USE_HASH_TABLE
Time: .45 hours
Reported-by: Ahmad Shahba <ah.shahba@gmail.com>
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| #
e51df6f4
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| 09-Nov-2016 |
stefano_zampini <stefano.zampini@gmail.com> |
Merge branch 'master' into stefano_zampini/feature-pcbddc-saddlepoint
This is needed to deal with some changes in MatNullSpace from commit 9d2471e
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10c1f87b
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| 27-Oct-2016 |
Toby Isaac <tisaac@uchicago.edu> |
Merge branch 'master' into tisaac/dmplex-feature-real-to-ref
I need updated PetscFE interfaces in what I'm going to do
* master: (603 commits)
parmetis: fix typo in testsuite
Added PETSC_HAVE_A
Merge branch 'master' into tisaac/dmplex-feature-real-to-ref
I need updated PetscFE interfaces in what I'm going to do
* master: (603 commits)
parmetis: fix typo in testsuite
Added PETSC_HAVE_ATTRIBUTEALIGNED flag to makefile
PCSetUp_SVD() used incorrect matrix for matrix size in parallel, also need to skip LAPACK call if matrix size is zero
strumpack: update to latest version 1.0.4
Remove valgrind warning about MPI_Allreduce() with uninitialized data
sed for test output that has atol convergence with quad precision
updated ex1_nest tests
fixed incorrect key value
fix: bad merge a69d34a
test: move runex78 to TESTEXAMPLES_C_NOTSINGLE
build: fix warnings
sys: update test to produce same result - irrespective of debug/opt build - and presence of ~/.petscrc
sys: src/sys/examples/tests/ex30.c -> src/sys/examples/tests/ex32.c to avoid conflict in master
Sed output, since quad precision reduces below atol on these tests
remove automatically generated matrix names from test output files since can be different
Fixes for MatMPIXXXSetPreallocation(), they were not reentrant, since they kept the information used for matrix-vector products
GAMG: fix PCView_GAMG() format - and update output/ex56_0.out
superlu_dist: 64-bit-indices fix https://github.com/xiaoyeli/superlu_dist/issues/4
Add SNESSetDivergenceTolerance / -snes_divergence_tolerance.
fixed unit read in Plex
...
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| #
3e97621d
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| 25-Oct-2016 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'barry/fix-matmpixxxsetpreallocation-reentrant'
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| #
cb7b82dd
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| 23-Oct-2016 |
Barry Smith <bsmith@mcs.anl.gov> |
Fixes for MatMPIXXXSetPreallocation(), they were not reentrant, since they kept the information used for matrix-vector products
from the previous load as well as the incorrectly sized aij->B matrix.
Fixes for MatMPIXXXSetPreallocation(), they were not reentrant, since they kept the information used for matrix-vector products
from the previous load as well as the incorrectly sized aij->B matrix.
Time: 1.75 hours
Reported-by: Satish Balay <balay@mcs.anl.gov>
show more ...
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| #
e923053f
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| 15-Oct-2016 |
stefano_zampini <stefano.zampini@gmail.com> |
Merge branch 'stefano_zampini/feature-convert-matnest-matis' into stefano_zampini/feature-pcbddc-saddlepoint
I have to merge it here, since there's an API addition for MatIS in stefano_zampini/featu
Merge branch 'stefano_zampini/feature-convert-matnest-matis' into stefano_zampini/feature-pcbddc-saddlepoint
I have to merge it here, since there's an API addition for MatIS in stefano_zampini/feature-pcbddc-saddlepoint
that prevents me to smoothly merge stefano_zampini/feature-convert-matnest-matis into next.
This will also facilitate merging stefano_zampini/feature-pcbddc-saddlepoint into master
Conflicts:
src/docs/website/documentation/changes/dev.html
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| #
46533700
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| 15-Oct-2016 |
stefano_zampini <stefano.zampini@gmail.com> |
Mat: MatSetBlockSizes as a MATOP.
it allows to change the block sizes at a later stage.
For the block formats, the default op raise an error if the user tries to change them
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