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459e96c1
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| 28-Aug-2013 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'master' into knepley/feature-plex-refine-3d
* master: (273 commits)
Mat ex170: Comments
VTK: Small fix to error message (.vts to .vtu)
VTK: Small fix to error message
Fixed bib
Merge branch 'master' into knepley/feature-plex-refine-3d
* master: (273 commits)
Mat ex170: Comments
VTK: Small fix to error message (.vts to .vtu)
VTK: Small fix to error message
Fixed bib entries
Bib: Updates
AO: fix erroneous processing of -ao_view and factor into AOViewFromOptions
doc: fix named argument in {Vec,Mat,DM}ViewFromOptions
Sys: add PetscDataTypeFromString() and test code
Mat: Should say that it has a nullspace in MatView()
parms: update tarball with fix for namespace conflict with metis
fix citation 'Golub_Varga_1961'
parmetis: update tarball to parmetis-4.0.2-p5 which fixes an install issue with cygwin
Sys Logging: revert parent traversal
fixed hdf5.py so that if self.libraries.compression is None the code still runs correctly
DMDA: fix bad cast of DM_DA to PetscObject
MatClique: follow DistMultiVec API changes
MatClique: remove unused variables
config cmakeboot: add C++ flags any time compiler is available
config OpenMP: check for C++ flag any time the compiler is available
replaced all left-over uses of a single PetscMalloc() to allocated multiple arrays: replaced with PetscMallocN() The only ones left are when the second array is set into the first array and one ugly usage in the MUMPS interface that cannot be easily fixed
...
Conflicts:
include/petscdmplex.h
show more ...
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| #
c0c93d0e
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| 28-Aug-2013 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'master' into knepley/feature-dmda-section
* master: (287 commits)
Mat ex170: Comments
VTK: Small fix to error message (.vts to .vtu)
VTK: Small fix to error message
Fixed bib e
Merge branch 'master' into knepley/feature-dmda-section
* master: (287 commits)
Mat ex170: Comments
VTK: Small fix to error message (.vts to .vtu)
VTK: Small fix to error message
Fixed bib entries
Bib: Updates
AO: fix erroneous processing of -ao_view and factor into AOViewFromOptions
doc: fix named argument in {Vec,Mat,DM}ViewFromOptions
Sys: add PetscDataTypeFromString() and test code
Mat: Should say that it has a nullspace in MatView()
parms: update tarball with fix for namespace conflict with metis
fix citation 'Golub_Varga_1961'
parmetis: update tarball to parmetis-4.0.2-p5 which fixes an install issue with cygwin
Sys Logging: revert parent traversal
fixed hdf5.py so that if self.libraries.compression is None the code still runs correctly
DMDA: fix bad cast of DM_DA to PetscObject
MatClique: follow DistMultiVec API changes
MatClique: remove unused variables
config cmakeboot: add C++ flags any time compiler is available
config OpenMP: check for C++ flag any time the compiler is available
replaced all left-over uses of a single PetscMalloc() to allocated multiple arrays: replaced with PetscMallocN() The only ones left are when the second array is set into the first array and one ugly usage in the MUMPS interface that cannot be easily fixed
...
show more ...
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| #
609189e8
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| 21-Aug-2013 |
Hong Zhang <hzhang@mcs.anl.gov> |
Merge branch 'master' of bitbucket.org:petsc/petsc
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| #
1b17e196
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| 20-Aug-2013 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'barry/fixmultmallocs'
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| #
eb9baa12
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| 19-Aug-2013 |
Barry Smith <bsmith@mcs.anl.gov> |
replaced all left-over uses of a single PetscMalloc() to allocated multiple arrays: replaced with PetscMallocN()
The only ones left are when the second array is set into the first array and one ugly
replaced all left-over uses of a single PetscMalloc() to allocated multiple arrays: replaced with PetscMallocN()
The only ones left are when the second array is set into the first array and one ugly usage in the MUMPS interface that cannot be easily fixed
show more ...
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| #
9b921294
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| 17-Aug-2013 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'barry/improve-memory-logging'
Conflicts:
src/ksp/pc/impls/redundant/redundant.c
src/mat/interface/matnull.c
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11e456e1
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| 17-Aug-2013 |
Barry Smith <bsmith@mcs.anl.gov> |
removed Mat option for skipping checking of compressed row format since it is now free using the nonzerorowcnt previously introduced
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e33c197d
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| 11-Jun-2013 |
Richard Mills <rtm@eecs.utk.edu> |
Merged petsc/petsc into rmills/petsc master.
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3bb1ff40
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| 28-May-2013 |
Barry Smith <bsmith@mcs.anl.gov> |
logging memory now credits to all ancestors
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| #
3e2ac207
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| 23-May-2013 |
Hong Zhang <hzhang@mcs.anl.gov> |
Merge branch 'hzhang/mat-multiprocblock_baij'
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| #
e8271787
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| 22-May-2013 |
Hong Zhang <hzhang@mcs.anl.gov> |
implement MatGetMultiProcBlock_MPIBAIJ()
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| #
79d5ba79
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| 15-May-2013 |
Satish Balay <balay@mcs.anl.gov> |
Merge branch 'maint'
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a4b1a0f6
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| 15-May-2013 |
Jed Brown <jedbrown@mcs.anl.gov> |
Mat doc: align columns in preallocation diagrams
Noticed-by: Mikael Öhman <micketeer@gmail.com>
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11513a83
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| 07-May-2013 |
Jed Brown <jedbrown@mcs.anl.gov> |
Merge branch 'jed/stack-call-blas'
Fix performance bug that calling BLAS takes an amount of time dependent
on the number of memory allocations that the program has made.
* jed/stack-call-blas:
Pe
Merge branch 'jed/stack-call-blas'
Fix performance bug that calling BLAS takes an amount of time dependent
on the number of memory allocations that the program has made.
* jed/stack-call-blas:
PetscStackCallBLAS: new macro instead of PetscStackCall (skip CHKMEMQ)
Stack: consolidate handling of PetscStack
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| #
8b83055f
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| 05-May-2013 |
Jed Brown <jedbrown@mcs.anl.gov> |
PetscStackCallBLAS: new macro instead of PetscStackCall (skip CHKMEMQ)
When CHKMEMQ occurs on every call to BLAS or Lapack, we sometimes see
unacceptable performance degradation (orders of magnitude
PetscStackCallBLAS: new macro instead of PetscStackCall (skip CHKMEMQ)
When CHKMEMQ occurs on every call to BLAS or Lapack, we sometimes see
unacceptable performance degradation (orders of magnitude).
PetscStackCallBLAS is currently identical to PetscStackCall except for
skipping CHKMEMQ, but such checking could be made optional in the
future.
show more ...
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| #
6a4bb4b0
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| 26-Apr-2013 |
Jed Brown <jedbrown@mcs.anl.gov> |
Merge bug fix/patch releases up to 3.2-p7 into maint-3.2
* commit 'a9157d915ed96804280c3dc077186a2a633fd603': (157 commits)
Fix PyPI download URL to help pip figure out the release version
#1109
Merge bug fix/patch releases up to 3.2-p7 into maint-3.2
* commit 'a9157d915ed96804280c3dc077186a2a633fd603': (157 commits)
Fix PyPI download URL to help pip figure out the release version
#110990 fix timestamp order for .so vs .a during 'make install'
Update FFTW download
Increase patchlevel to 3.2-p7
...
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| #
7e7d4f0d
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| 10-Apr-2013 |
Richard Mills <rtm@eecs.utk.edu> |
Merged petsc/petsc into rmills/petsc master
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| #
8a1af44d
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| 03-Apr-2013 |
Jed Brown <jed@59A2.org> |
Merge branch 'barry/rm-xxxregisterdynamic'
* barry/rm-xxxregisterdynamic:
Registration: remove stale 'XXRegisterDynamic)' entries in man pages
TS examples: fix use of PetscFunctionList and add t
Merge branch 'barry/rm-xxxregisterdynamic'
* barry/rm-xxxregisterdynamic:
Registration: remove stale 'XXRegisterDynamic)' entries in man pages
TS examples: fix use of PetscFunctionList and add to nightlies
Changes: Note updates to XRegisterDynamic/PetscObjectComposeFunctionDynamic
PetscObjectComposeFunctionDynamic: remove stale docs and usage
developers.tex: remove complications from function composition with dlls
removed string version of function name for XXXRegister(), PetscFunctionListAdd() and PetscObjectComposeFunction()
changes: document PetscFunctionListAdd() API change
developers.tex: update documentation of PetscObjectComposeFunction
removed path and MPI_Comm arguments from PetscFunctionListFind/Add()
removed path argument to XXXInitializePackage() and XXXRegister()
removed XXXRegisterDynamic() but kept the APIs for everything else underneath the same phase I of the update to handling registering function pointers
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| #
a983c5aa
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| 28-Mar-2013 |
Jungho Lee <julee@mcs.anl.gov> |
Merge branch 'master' of bitbucket.org:petsc/petsc
|
| #
4d2d963c
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| 28-Mar-2013 |
Richard Mills <rtm@eecs.utk.edu> |
Merged petsc/petsc into rmills/petsc master
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| #
e1d27e54
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| 28-Mar-2013 |
Jed Brown <jed@59A2.org> |
Merge branch 'barry/rm-xxxregisterdynamic' into jed/ts-eimex
PetscObjectComposeFunctionDynamic() and TSRegisterDynamic() were
replaced by PetscObjectComposeFunction() and TSRegister(), both of which
Merge branch 'barry/rm-xxxregisterdynamic' into jed/ts-eimex
PetscObjectComposeFunctionDynamic() and TSRegisterDynamic() were
replaced by PetscObjectComposeFunction() and TSRegister(), both of which
drop the string name argument.
* barry/rm-xxxregisterdynamic: (82 commits)
...
Conflicts:
src/ts/interface/tsregall.c
show more ...
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| #
bdf89e91
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| 26-Mar-2013 |
Barry Smith <bsmith@mcs.anl.gov> |
removed string version of function name for XXXRegister(), PetscFunctionListAdd() and PetscObjectComposeFunction()
|
| #
714d7381
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| 24-Mar-2013 |
Jed Brown <jed@59A2.org> |
Merge branch 'karlrupp/fix-mpiaij-prealloc'
* karlrupp/fix-mpiaij-prealloc:
MPI-mat-preallocation: Removed redundant checks for MPI{S|B| }AIJ-matrices in light of recent MAT_NEW_NONZERO_ALLOCATION
Merge branch 'karlrupp/fix-mpiaij-prealloc'
* karlrupp/fix-mpiaij-prealloc:
MPI-mat-preallocation: Removed redundant checks for MPI{S|B| }AIJ-matrices in light of recent MAT_NEW_NONZERO_ALLOCATION_ERR fixes.
MPIAJI-preallocation: Fixed problems with MAT_NEW_NONZERO_ALLOCATION_ERR for GPUs.
show more ...
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| #
547bc4d4
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| 21-Mar-2013 |
Karl Rupp <rupp@iue.tuwien.ac.at> |
MPI-mat-preallocation: Removed redundant checks for MPI{S|B| }AIJ-matrices in light of recent MAT_NEW_NONZERO_ALLOCATION_ERR fixes.
Number of on- and off-processor nonzeros in MPI-preallocation rout
MPI-mat-preallocation: Removed redundant checks for MPI{S|B| }AIJ-matrices in light of recent MAT_NEW_NONZERO_ALLOCATION_ERR fixes.
Number of on- and off-processor nonzeros in MPI-preallocation routines
is only forwarded to the sequential preallocation routines, no longer checked.
This allows to get rid of unnecessarily validating these parameters twice.
show more ...
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| #
365a8a9e
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| 21-Mar-2013 |
Barry Smith <bsmith@mcs.anl.gov> |
removed excessive use of CHKMEMQ;
|