Merge branch 'master' into tisaac/dmforest

If we're going to start developing on this again, the recent changes to the
location of configuration files will make it annoying to switch to and from
thi

Merge branch 'master' into tisaac/dmforest

If we're going to start developing on this again, the recent changes to the
location of configuration files will make it annoying to switch to and from
this branch. Matt's and my fixes in DMPlex will also be relevant.

* master: (1557 commits)
MatLoad_MPIDense() always allocated array space even if it was previously provided
Clarified lumping options for PCFieldSplitSchurPreType SELFP.
fixed up PetscInfo in GAMG
TSErrorWeightedNorm[2|Infinity]: API changes
MatLoad_SeqDense() always allocated new space for the data even if the user already provided it
Fixed DMCompositeGetAccessArray() to support readonly vectors
Fix obviously-wrong aspects of documentation on SNESVINEWTONRSLS and SNESVINEWTONSSLS.
fixed example to compile - demonstrates a bug
var name 'len' was F90 key word
For user provided Jacobian functions they should always assembly into the second matrix, the one from which the preconditioner is built because the first may be used as matrix-free with -snes_mf_operator
Suggest --with-64-bit-indices if users mistakenly use --with-64bit-indices
Fix configure logging of integer size.
missing underscore in #define of vecgetarrayread translation of fortran stub for VECGETARRAYREAD
updated test output files to reflect differences introduced previously in PCView output
-ksp_type preonly does not support -ksp_monitor_short so remove from test line to prevent extranious warning output
missing CHKERRQ; and ugly double declaration of ierr
Plex ex3: For want of a semicolon, the kingdom was lost
MatSetValuesMPISBAIJ will now print correct global indices when error generated due to new nonzero location
completed basic use of MatSetValuesBlocked_SeqBAIJ_Inlined() by MatSetValuesBlocked_MPIBAIJ() to allow proper global indices being printed when error generated by new nonzero locations.
Added inline version of MatSetValuesBlocked_SeqBAIJ() to be used by MatSetValuesBlocked_MPIBAIJ() to print error message for nonzero block with global indices
...

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Merge branch 'master' into shri/ts-is-for-differential-variables

Conflicts:
include/petsc-private/tsimpl.h
src/ts/impls/eimex/eimex.c
src/ts/interface/ts.c

Merge branch 'master' into jed/chem
Note merging a branch with good stuff in it for a year and a half is insane!

Conflicts:
src/ts/examples/tutorials/makefile
src/ts/interface/ts.c

Merge branch 'master' into stefano_zampini/pcbddc-adaptive-selection

Conflicts:
src/ksp/pc/impls/bddc/bddcprivate.c

Merge branch 'master' into barry/saws-options-merge-master

Totally confusing manual merge, could be wrong

Conflicts:
include/petscoptions.h
src/dm/impls/da/dacreate.c
src/sys/objects/aoptions.c

Merge branch 'master' into barry/saws-options-merge-master

Totally confusing manual merge, could be wrong

Conflicts:
include/petscoptions.h
src/dm/impls/da/dacreate.c
src/sys/objects/aoptions.c
src/sys/threadcomm/interface/threadcomm.c

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Merge branch 'master' into pr252/dmay/PetscViewerBinarySkipHeaderVecViewLoad
Manual merge of makefile

Conflicts:
src/sys/classes/viewer/examples/tutorials/makefile

Merge branch 'maint'

Conflicts:
src/mat/impls/baij/seq/baij.h
src/mat/impls/sbaij/mpi/mpisbaij.c
src/mat/impls/sbaij/seq/sbaij.h

Merge branch 'balay/fix-baij-dup-proto' into maint

baij: move 'seqbaij' prototypes required by mpibaij.c to baij.h
This fixes link failure with VS2005 cl

libpetsc.lib(mpibaij.o) : error LNK2019: unresolved external symbol "int __cdecl MatRestoreRow_

baij: move 'seqbaij' prototypes required by mpibaij.c to baij.h
This fixes link failure with VS2005 cl

libpetsc.lib(mpibaij.o) : error LNK2019: unresolved external symbol "int __cdecl MatRestoreRow_SeqBAIJ(struct _p_Mat *,int,int *,int * * const,class std::complex<double> * * const)" (?MatRestoreRow_SeqBAIJ@@YAHPEAU_p_Mat@@HPEAHQEAPEAHQEAPEAV?$complex@N@std@@@Z) referenced in function MatCreateMPIMatConcatenateSeqMat_MPIBAIJ

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Merge branch 'master' into mlange/refactor-plex-distribute

Conflicts:
src/dm/impls/plex/examples/tests/output/ex12_1.out
src/dm/impls/plex/examples/tests/output/ex12_2.out

Merge branch 'barry/fix-memoryallocation-matsor-seqbaij' into maint

Merge branch 'barry/fix-memoryallocation-matsor-seqbaij'

Memory allocation error where space is allocated MatMult_SeqBAIJ with a space shorter than that needed in MatSOR_SeqBAIJ

Reported-by: Stephan Kramer <s.kramer@imperial.ac.uk>

Merge branch 'hzhang/mat-redundant_sbaij'

Merge branch 'barry/add-some-matsolveforward-back' into maint

Merge branch 'barry/add-some-matsolveforward-back'

Added MatForward/BackwardSolve for SeqBAIJ block size 1-3 natural ordering
Added testing for them in already existing test code

rename MatCreateMPIBAIJConcatenateSeqBAIJ() to MatCreateMPIMatConcatenateSeqMat()

mv struct 'Mat_Redundant' to '_p_Mat’ for simplify codes

compile: fixes for windows/solaris

add MatGetRedundantMatrix_MPIBAIJ() -- almost same as MatGetRedundantMatrix_MPIAIJ()

Merge branch 'maint'

Merge branch 'hzhang/mataxpy-bugfix' into maint

bugfix for MatAXPY_ for mpibaij and mpisbaij

bugfix for MatAXPY_ for seqbaij and seqsbaij