| #
ec14d8c8
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| 27-May-2017 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'master' into knepley/feature-plex-sphere-mesh
* master: (2633 commits)
Bib: Added ref
SNES ex56: Update test output
add a citation to petsc.bib
Plex: Initialize variables
ini
Merge branch 'master' into knepley/feature-plex-sphere-mesh
* master: (2633 commits)
Bib: Added ref
SNES ex56: Update test output
add a citation to petsc.bib
Plex: Initialize variables
initialize ap as complained by the nightly tests
Plex ex3: Update to new point function API
initialize some variables as complained by nightly tests
SNES ex12: Mix misnaming Nf --> Nc
update tests
add tests
add MatView_SeqXAIJ_ASCII_structonly(); enable A->structure_only in MatSetValuesBlocked_SeqBAIJ
typo
fill-in some references
Bib: Fixed ref
Plex: Added PLY to file support
Plex: Adding PLY support
PetscDS: Turn off Fortran bindings for Constants
Plex tests: Updated to new point function API
SNES ex56: Moved tests to new format
DM: Allow field projection functions to take an array of scalars - This will allow us to pass in user data to kernels without void *, more efficiency than aux fields
...
Conflicts:
config/builder.py
include/petscdmplex.h
src/dm/impls/plex/examples/tests/ex1.c
src/dm/impls/plex/plexcreate.c
src/dm/impls/plex/plexgmsh.c
src/snes/examples/tutorials/ex63.c
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| #
a166d259
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| 15-Mar-2017 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/fix-plex-example-logging' into knepley/feature-plex-torus
* knepley/fix-plex-example-logging: (151 commits)
Plex ex12: Added logging stages
Plex ex1: Added logging stages
Merge branch 'knepley/fix-plex-example-logging' into knepley/feature-plex-torus
* knepley/fix-plex-example-logging: (151 commits)
Plex ex12: Added logging stages
Plex ex1: Added logging stages
update to latest hypre tag on github
fix 'inf' vs 'Inf' diff wrt vec_vec_utils_tagger_tutorials-ex1_8,9,18,19
MatSetOption(mat,MAT_IGNORE_ZERO_ENTRIES,PETSC_TRUE) no longer applies to zero values set or added to the matrix diagonal, they are now not ignored and are included in the matrix nonzero structure. This is useful for Jacobians passed to TS.
replace use/mention of depreciated -log_summary in many places
add extchem.py which was written years ago but never put in the distribution (hence it is broken).
petsc4py: update to snapshot with MatGetSubMatrices -> MatCreateSubMatrices etc API changes
Minor fixes for tchem examples due to changes in PETSc infrastructure
update webpage about API changes
add help menu for MatCreateSubMatricesMPI()
PetscCMPLX: assume type punning is safe
rename struct Mat_SubMat -> Mat_SubSppt
add a little information to the manual about using tchem
rename MatCreateSubMatrixComposite -> MatCreateSubMatrixVirtual; Mat_SubMatrix -> Mat_SubVirtual
need to protect the \ passed on the makefile on my Mac
Bib: Updated ref
update src/mat/examples/tests/output/ex23_#.out
rename MatGetSubMat -> MatCreateSubMat
Mark MatCreateMPIAIJWithSplitArrays() and MatMPIAIJSetPreallocationCSR() with MAT_NO_OFF_PROC_ENTRIES
...
Conflicts:
src/dm/impls/plex/examples/tests/ex1.c
src/dm/impls/plex/examples/tests/ex12.c
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| #
851d29aa
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| 15-Mar-2017 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/fix-plex-example-logging' into knepley/feature-plex-tests-new
* knepley/fix-plex-example-logging: (151 commits)
Plex ex12: Added logging stages
Plex ex1: Added logging stag
Merge branch 'knepley/fix-plex-example-logging' into knepley/feature-plex-tests-new
* knepley/fix-plex-example-logging: (151 commits)
Plex ex12: Added logging stages
Plex ex1: Added logging stages
update to latest hypre tag on github
fix 'inf' vs 'Inf' diff wrt vec_vec_utils_tagger_tutorials-ex1_8,9,18,19
MatSetOption(mat,MAT_IGNORE_ZERO_ENTRIES,PETSC_TRUE) no longer applies to zero values set or added to the matrix diagonal, they are now not ignored and are included in the matrix nonzero structure. This is useful for Jacobians passed to TS.
replace use/mention of depreciated -log_summary in many places
add extchem.py which was written years ago but never put in the distribution (hence it is broken).
petsc4py: update to snapshot with MatGetSubMatrices -> MatCreateSubMatrices etc API changes
Minor fixes for tchem examples due to changes in PETSc infrastructure
update webpage about API changes
add help menu for MatCreateSubMatricesMPI()
PetscCMPLX: assume type punning is safe
rename struct Mat_SubMat -> Mat_SubSppt
add a little information to the manual about using tchem
rename MatCreateSubMatrixComposite -> MatCreateSubMatrixVirtual; Mat_SubMatrix -> Mat_SubVirtual
need to protect the \ passed on the makefile on my Mac
Bib: Updated ref
update src/mat/examples/tests/output/ex23_#.out
rename MatGetSubMat -> MatCreateSubMat
Mark MatCreateMPIAIJWithSplitArrays() and MatMPIAIJSetPreallocationCSR() with MAT_NO_OFF_PROC_ENTRIES
...
Conflicts:
src/dm/impls/plex/examples/tests/ex12.c
show more ...
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| #
c90b701e
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| 14-Mar-2017 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'master' into knepley/feature-plex-pragmatic-parallel
* master: (1379 commits)
Minor fixes for tchem examples due to changes in PETSc infrastructure
update webpage about API changes
Merge branch 'master' into knepley/feature-plex-pragmatic-parallel
* master: (1379 commits)
Minor fixes for tchem examples due to changes in PETSc infrastructure
update webpage about API changes
add help menu for MatCreateSubMatricesMPI()
rename struct Mat_SubMat -> Mat_SubSppt
add a little information to the manual about using tchem
rename MatCreateSubMatrixComposite -> MatCreateSubMatrixVirtual; Mat_SubMatrix -> Mat_SubVirtual
need to protect the \ passed on the makefile on my Mac
Bib: Updated ref
update src/mat/examples/tests/output/ex23_#.out
rename MatGetSubMat -> MatCreateSubMat
Mark MatCreateMPIAIJWithSplitArrays() and MatMPIAIJSetPreallocationCSR() with MAT_NO_OFF_PROC_ENTRIES
superlu: libray is installed in PREFIX/lib64 - fix this to use PREFIX/lib
backport fixes cc105cc3 2b35c90a - required for 3bf428d - that was backported from master - 80c96bb
'echo -n' fails on opensolaris/osx - so avoid using it.
fix diffs in nightlybuilds due to options in ~/.petscrc
add Kelley03 to src/docs/tex/petsc.bib
build: determine moudles, mpi.h used during buildtime and print in 'info'
fix analyzer warnings
fix build failure on opensolaris - where -lm from flibs is removed due to -lm in cxxlibs. But then - only flib gets used for some configure tests [blaslapack, parms]
config: prefer __restrict over C99 restrict keyword
...
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| #
0e168440
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| 08-Mar-2017 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'master' of bitbucket.org:petsc/petsc
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| #
ebada01f
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| 08-Mar-2017 |
Barry Smith <bsmith@mcs.anl.gov> |
Minor fixes for tchem examples due to changes in PETSc infrastructure
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| #
8cc6944d
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| 08-Mar-2017 |
Satish Balay <balay@mcs.anl.gov> |
Merge remote-tracking branch 'origin/hzhang/rename_matgetsubmats'
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| #
5c39f6d9
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| 07-Mar-2017 |
Hong Zhang <hzhang@mcs.anl.gov> |
rename struct Mat_SubMat -> Mat_SubSppt
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| #
7dae84e0
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| 07-Mar-2017 |
Hong Zhang <hzhang@mcs.anl.gov> |
rename MatGetSubMat -> MatCreateSubMat
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| #
c6a88246
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| 24-Feb-2017 |
Hong Zhang <hzhang@mcs.anl.gov> |
Merge branch 'hzhang/fix-getsubmats-reuse'
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| #
e69d178c
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| 22-Feb-2017 |
Hong Zhang <hzhang@mcs.anl.gov> |
fix warnings reported by nightly tests
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| #
16b64355
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| 21-Feb-2017 |
Hong Zhang <hzhang@mcs.anl.gov> |
reorganize/rename MatDestroy_xxx_SubMatrices
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| #
df750dc8
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| 17-Feb-2017 |
Hong Zhang <hzhang@mcs.anl.gov> |
add MatDestroySubMatrices(); bugfix
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| #
9137bce6
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| 24-Dec-2016 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'barry/remove-funct'
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| #
71752422
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| 21-Dec-2016 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'barry/half-precision'
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| #
fbfcfee5
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| 19-Dec-2016 |
Barry Smith <bsmith@mcs.anl.gov> |
Remove the use and definition of __FUNCT__ throughout the code
Since all modern C/C++ compilers provide this functionality we no longer need to provide it manually in PETSc
Time: 1.5 hours
Thanks-t
Remove the use and definition of __FUNCT__ throughout the code
Since all modern C/C++ compilers provide this functionality we no longer need to provide it manually in PETSc
Time: 1.5 hours
Thanks-to: Andreas Mang <andreas@ices.utexas.edu>
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| #
570b7f6d
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| 16-Dec-2016 |
Barry Smith <bsmith@mcs.anl.gov> |
Support for half-precision using __fp16.
Requires repository trunk of gcc and ARM systems
Configure with --with-precision=__fp16 --download-f2cblaslapack --with-fc=0 --with-cxx=0
Many standard PETSc
Support for half-precision using __fp16.
Requires repository trunk of gcc and ARM systems
Configure with --with-precision=__fp16 --download-f2cblaslapack --with-fc=0 --with-cxx=0
Many standard PETSc tests fail due to lack of precision
Funded-by: ECP
Project: fp16
Time: 24 hours
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| #
10c1f87b
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| 27-Oct-2016 |
Toby Isaac <tisaac@uchicago.edu> |
Merge branch 'master' into tisaac/dmplex-feature-real-to-ref
I need updated PetscFE interfaces in what I'm going to do
* master: (603 commits)
parmetis: fix typo in testsuite
Added PETSC_HAVE_A
Merge branch 'master' into tisaac/dmplex-feature-real-to-ref
I need updated PetscFE interfaces in what I'm going to do
* master: (603 commits)
parmetis: fix typo in testsuite
Added PETSC_HAVE_ATTRIBUTEALIGNED flag to makefile
PCSetUp_SVD() used incorrect matrix for matrix size in parallel, also need to skip LAPACK call if matrix size is zero
strumpack: update to latest version 1.0.4
Remove valgrind warning about MPI_Allreduce() with uninitialized data
sed for test output that has atol convergence with quad precision
updated ex1_nest tests
fixed incorrect key value
fix: bad merge a69d34a
test: move runex78 to TESTEXAMPLES_C_NOTSINGLE
build: fix warnings
sys: update test to produce same result - irrespective of debug/opt build - and presence of ~/.petscrc
sys: src/sys/examples/tests/ex30.c -> src/sys/examples/tests/ex32.c to avoid conflict in master
Sed output, since quad precision reduces below atol on these tests
remove automatically generated matrix names from test output files since can be different
Fixes for MatMPIXXXSetPreallocation(), they were not reentrant, since they kept the information used for matrix-vector products
GAMG: fix PCView_GAMG() format - and update output/ex56_0.out
superlu_dist: 64-bit-indices fix https://github.com/xiaoyeli/superlu_dist/issues/4
Add SNESSetDivergenceTolerance / -snes_divergence_tolerance.
fixed unit read in Plex
...
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| #
e923053f
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| 15-Oct-2016 |
stefano_zampini <stefano.zampini@gmail.com> |
Merge branch 'stefano_zampini/feature-convert-matnest-matis' into stefano_zampini/feature-pcbddc-saddlepoint
I have to merge it here, since there's an API addition for MatIS in stefano_zampini/featu
Merge branch 'stefano_zampini/feature-convert-matnest-matis' into stefano_zampini/feature-pcbddc-saddlepoint
I have to merge it here, since there's an API addition for MatIS in stefano_zampini/feature-pcbddc-saddlepoint
that prevents me to smoothly merge stefano_zampini/feature-convert-matnest-matis into next.
This will also facilitate merging stefano_zampini/feature-pcbddc-saddlepoint into master
Conflicts:
src/docs/website/documentation/changes/dev.html
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| #
92456368
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| 25-Sep-2016 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'maint'
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| #
d420de60
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| 25-Sep-2016 |
BarryFSmith <bsmith@mcs.anl.gov> |
Merged in stefano_zampini/fix-matmult-seqbaij (pull request #567)
MatSeqBAIJ: MatMult fixes for compressed row cases
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| #
ef16e671
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| 21-Sep-2016 |
Stefano Zampini <stefano.zampini@gmail.com> |
MatSeqBAIJ: MatMult fixes for compressed row cases
|
| #
54761ea3
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| 14-Aug-2016 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'master' into barry/fix-successful-numerical-factorization-after-failure/master
The maint patch for the given problem cannot merge cleanly into next due to changes
in the same code in m
Merge branch 'master' into barry/fix-successful-numerical-factorization-after-failure/master
The maint patch for the given problem cannot merge cleanly into next due to changes
in the same code in master (the introduction of MatFactorGetError()) therefor need
to merge in master and use the new construct before merging to next
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| #
bef83e63
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| 23-May-2016 |
Stefano Zampini <stefano.zampini@gmail.com> |
Merge branch 'master' into stefano_zampini/feature-pcbddc-saddlepoint
Conflicts:
src/ksp/pc/impls/bddc/bddc.c
src/ksp/pc/impls/bddc/bddcprivate.c
src/mat/impls/aij/seq/mkl_pardiso/mkl_pardiso.c
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| #
7caaeba4
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| 19-May-2016 |
barral <none@none.fr> |
Merge branch 'master' into barral/feature-dmplex-adapt
|