| #
9044fa66
|
| 14-Apr-2018 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'master' into knepley/fix-plex-residual-loop
Warning: This merge includes real changes
* master: (188 commits)
Add JuMP citation
Copyedits and updates to developers manual
Add mor
Merge branch 'master' into knepley/fix-plex-residual-loop
Warning: This merge includes real changes
* master: (188 commits)
Add JuMP citation
Copyedits and updates to developers manual
Add more protection to intrinsics
MPI: protect arguments in MPI macros
Add the missing conditionals for 64-bit build
Plex+VTK: Fix field type determination
Fix bug in name cleanup
Bib: Added ref
Plex+VTK: Fix field type determination
Plex: Updated test output - I am now hating this shit
forgot to save file after moving prototypes to petscsys.h
update Apple example project settings per Xcode
Two functions should actually be public, used, for example from Apple MacOS and iOS programs
includes should always be included relative to include directory
Apple removed old locations of docsets
SNES ex12: Updated test output
SNES ex62: Set name of solution vector - Update test output
revert sources to dev - reset PETSC_VERSION_RELEASE - reset changes/dev.html
release: set v3.9 strings
move output file to the correct location. i.e fix 305862f9cd0dc399542ae11dd744508e4b6ad2e3
...
Conflicts:
src/snes/utils/dmplexsnes.c
src/ts/utils/dmplexts.c
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| #
5f70456a
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| 13-Apr-2018 |
Hong Zhang <hongzhang@anl.gov> |
Add guard macros for FMA intrinsics
mm256 FMA instructions do not belong to AVX2 (but AVX512 contains mm512 FMA). There are processors that supports AVX2 but no FMA, e.g. i7-4800MQ.
Funded-by:
Proj
Add guard macros for FMA intrinsics
mm256 FMA instructions do not belong to AVX2 (but AVX512 contains mm512 FMA). There are processors that supports AVX2 but no FMA, e.g. i7-4800MQ.
Funded-by:
Project: PETSc for Theta
Time: 0.5 hours
Reported-by: Randall Mackie <rlmackie862@gmail.com>
Thanks-to:
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| #
a33e646b
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| 13-Apr-2018 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'master' of https://bitbucket.org/petsc/petsc
# By Hong Zhang (2) and Jed Brown (1)
# Via Satish Balay
* 'master' of https://bitbucket.org/petsc/petsc:
Add more protection to intrinsi
Merge branch 'master' of https://bitbucket.org/petsc/petsc
# By Hong Zhang (2) and Jed Brown (1)
# Via Satish Balay
* 'master' of https://bitbucket.org/petsc/petsc:
Add more protection to intrinsics
MPI: protect arguments in MPI macros
Add the missing conditionals for 64-bit build
show more ...
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| #
5d8c993f
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| 13-Apr-2018 |
Satish Balay <balay@mcs.anl.gov> |
Merge branch 'maint'
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| #
8367f993
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| 13-Apr-2018 |
Satish Balay <balay@mcs.anl.gov> |
Merge remote-tracking branch 'origin/hongzh/fix-64bit-knl-build/maint' into maint
|
| #
4243e2ce
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| 11-Apr-2018 |
Hong Zhang <hongzhang@anl.gov> |
Add more protection to intrinsics
Funded-by:
Project: PETSc for Theta
Time: 0.5 hours
Reported-by: "Nourgaliev, Robert Nr" <nourgaliev1@llnl.gov>
Thanks-to:
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| #
6294108e
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| 19-Mar-2018 |
Toby Isaac <tisaac@cc.gatech.edu> |
Merge remote-tracking branch 'origin/knepley/fix-snes-ex69' into tisaac/feature-dmfield
* origin/knepley/fix-snes-ex69: (311 commits)
PetscFECreateDefault: fix custom Fortran interface to use MPI_
Merge remote-tracking branch 'origin/knepley/fix-snes-ex69' into tisaac/feature-dmfield
* origin/knepley/fix-snes-ex69: (311 commits)
PetscFECreateDefault: fix custom Fortran interface to use MPI_Comm
SNES ex69: Updated test output
SNES ex69: Removed all mantle stuff and change fields to constants - Also use dsymutil for executables
SNES ex69: Removed special partition
SNES ex69: Fixed null space creation - Null space locks its vectors
PetscFE: PetscFECreateDefault() now takes MPI_Comm instead of DM
cleanup very ugly PCGAMG manual page
minor clarifications for VecScatterCreate() manual page
gcov: PETSC_ARCH is required onlyfor -run_gcov - and not for -merge_gcov [where it doesn't exist]
make clearer in help statements what --with-external-packages-dir is for.
Website: Added news entry for PETSc User Meeting 2018 on main page.
CUDA: Further test output fixes for mat_tests-ex2
Turn off elemental test for parmetis running since this does not work on batch systems.
3.8 Changes: KSPCHEBYSHEV
CUDA: Fixed most test errors due to MatMultTranspose*
website: update urls
website: fix Jason's name to match pic. Also add Todd's pic
Dev manual: copyedit
DMPlexDistributeLabels: Propagate the output flag
cuda/cusp: update minimum supported versions of cuda to 7.5 and cusp to 0.5.0
...
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| #
00467d5f
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| 27-Feb-2018 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'pr862/dkokron/IntelIntrinsicsForBAIJ9by9MDotMaxpy/maint'
|
| #
2a86a7ca
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| 25-Feb-2018 |
Barry Smith <bsmith@mcs.anl.gov> |
update #define conditions used to turn on Intel intrinsics
Commit-type: portability-fix, style-fix
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| #
aee5c371
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| 23-Feb-2018 |
Barry Smith <bsmith@mcs.anl.gov> |
patches to get it to work with gcc and clang and any non-intel compiler
Commit-type: bug-fix, portability-fix
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| #
96e086a2
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| 12-Feb-2018 |
Daniel Kokron <Daniel.Kokron@nasa.gov> |
Added case specific intrinsic kernels for VecMdot_Seq, VecMAXPY_Seq, and BAIJ bocksize 9 by 9
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| #
e366c154
|
| 15-Nov-2017 |
Jed Brown <jed@jedbrown.org> |
Merge commit 'd47bf9aaf1e5266cc3f0ff499f934c85788965a9' into jed/fix-matcreatempibaij/maint
Obtain changed (v3.5) handling of MatMPIBAIJSetPreallocationCSR to match
documentation.
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| #
ec14d8c8
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| 27-May-2017 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'master' into knepley/feature-plex-sphere-mesh
* master: (2633 commits)
Bib: Added ref
SNES ex56: Update test output
add a citation to petsc.bib
Plex: Initialize variables
ini
Merge branch 'master' into knepley/feature-plex-sphere-mesh
* master: (2633 commits)
Bib: Added ref
SNES ex56: Update test output
add a citation to petsc.bib
Plex: Initialize variables
initialize ap as complained by the nightly tests
Plex ex3: Update to new point function API
initialize some variables as complained by nightly tests
SNES ex12: Mix misnaming Nf --> Nc
update tests
add tests
add MatView_SeqXAIJ_ASCII_structonly(); enable A->structure_only in MatSetValuesBlocked_SeqBAIJ
typo
fill-in some references
Bib: Fixed ref
Plex: Added PLY to file support
Plex: Adding PLY support
PetscDS: Turn off Fortran bindings for Constants
Plex tests: Updated to new point function API
SNES ex56: Moved tests to new format
DM: Allow field projection functions to take an array of scalars - This will allow us to pass in user data to kernels without void *, more efficiency than aux fields
...
Conflicts:
config/builder.py
include/petscdmplex.h
src/dm/impls/plex/examples/tests/ex1.c
src/dm/impls/plex/plexcreate.c
src/dm/impls/plex/plexgmsh.c
src/snes/examples/tutorials/ex63.c
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| #
ba7f0461
|
| 30-Mar-2017 |
Hong Zhang <hzhang@mcs.anl.gov> |
rm MatLUFactorNumeric_SeqBAIJ_11_NaturalOrdering() because it does not improve performance
add MatSolve_SeqBAIJ_bs_NaturalOrdering(), bs=12,...,14
add test runex50_2
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| #
b59fa7b7
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| 24-Mar-2017 |
Hong Zhang <hzhang@mcs.anl.gov> |
implement PetscKernel_A_gets_A_times_B_11()
|
| #
c90b701e
|
| 14-Mar-2017 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'master' into knepley/feature-plex-pragmatic-parallel
* master: (1379 commits)
Minor fixes for tchem examples due to changes in PETSc infrastructure
update webpage about API changes
Merge branch 'master' into knepley/feature-plex-pragmatic-parallel
* master: (1379 commits)
Minor fixes for tchem examples due to changes in PETSc infrastructure
update webpage about API changes
add help menu for MatCreateSubMatricesMPI()
rename struct Mat_SubMat -> Mat_SubSppt
add a little information to the manual about using tchem
rename MatCreateSubMatrixComposite -> MatCreateSubMatrixVirtual; Mat_SubMatrix -> Mat_SubVirtual
need to protect the \ passed on the makefile on my Mac
Bib: Updated ref
update src/mat/examples/tests/output/ex23_#.out
rename MatGetSubMat -> MatCreateSubMat
Mark MatCreateMPIAIJWithSplitArrays() and MatMPIAIJSetPreallocationCSR() with MAT_NO_OFF_PROC_ENTRIES
superlu: libray is installed in PREFIX/lib64 - fix this to use PREFIX/lib
backport fixes cc105cc3 2b35c90a - required for 3bf428d - that was backported from master - 80c96bb
'echo -n' fails on opensolaris/osx - so avoid using it.
fix diffs in nightlybuilds due to options in ~/.petscrc
add Kelley03 to src/docs/tex/petsc.bib
build: determine moudles, mpi.h used during buildtime and print in 'info'
fix analyzer warnings
fix build failure on opensolaris - where -lm from flibs is removed due to -lm in cxxlibs. But then - only flib gets used for some configure tests [blaslapack, parms]
config: prefer __restrict over C99 restrict keyword
...
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| #
9137bce6
|
| 24-Dec-2016 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'barry/remove-funct'
|
| #
fbfcfee5
|
| 19-Dec-2016 |
Barry Smith <bsmith@mcs.anl.gov> |
Remove the use and definition of __FUNCT__ throughout the code
Since all modern C/C++ compilers provide this functionality we no longer need to provide it manually in PETSc
Time: 1.5 hours
Thanks-t
Remove the use and definition of __FUNCT__ throughout the code
Since all modern C/C++ compilers provide this functionality we no longer need to provide it manually in PETSc
Time: 1.5 hours
Thanks-to: Andreas Mang <andreas@ices.utexas.edu>
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|
| #
54761ea3
|
| 14-Aug-2016 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'master' into barry/fix-successful-numerical-factorization-after-failure/master
The maint patch for the given problem cannot merge cleanly into next due to changes
in the same code in m
Merge branch 'master' into barry/fix-successful-numerical-factorization-after-failure/master
The maint patch for the given problem cannot merge cleanly into next due to changes
in the same code in master (the introduction of MatFactorGetError()) therefor need
to merge in master and use the new construct before merging to next
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| #
bef83e63
|
| 23-May-2016 |
Stefano Zampini <stefano.zampini@gmail.com> |
Merge branch 'master' into stefano_zampini/feature-pcbddc-saddlepoint
Conflicts:
src/ksp/pc/impls/bddc/bddc.c
src/ksp/pc/impls/bddc/bddcprivate.c
src/mat/impls/aij/seq/mkl_pardiso/mkl_pardiso.c
|
| #
7caaeba4
|
| 19-May-2016 |
barral <none@none.fr> |
Merge branch 'master' into barral/feature-dmplex-adapt
|
| #
3546dc83
|
| 17-May-2016 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'jose/maint/tabs-print-class' into maint
|
| #
de18c742
|
| 16-May-2016 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'master' into knepley/feature-parallel-mesh-load
* master: (59 commits)
Increase patchlevel to 3.7.1
Fix manual page for MatGetTransposeNullSpace()
remove unneeded use of PetscCon
Merge branch 'master' into knepley/feature-parallel-mesh-load
* master: (59 commits)
Increase patchlevel to 3.7.1
Fix manual page for MatGetTransposeNullSpace()
remove unneeded use of PetscContainer to hold iscoloring in SNESComputeNGSDefaultSecant()
added SNESView for ngs, added options database to ngs manual page, removed dead routine
gcov: enable in mpiuni test
incorrect capitalization of an even name
force same number of iterations for output of ml example
changed output for ml example to not be machine dependent
DMP4est: access data after setup
SNESLineSearch_Apply was labeled with PETSC_EXTERN in one place but when declared this was not visible hence library build failed under Microsoft.
Example had print statements of complex numbers
Fix more errors in agmres for 64 bit integers
builds: fix nampespase conflict with 'analyzer-buid' and checkBuilds.py
gcov: add more packages to test
add a couple of KSP that were not represented in testing
gcov: enable more externalpackages for this test
fixes for agmres for 64 bit indices, fix for findvisibleprivatefunctions to be portable for Mac and Linux
get GAMG to get null space (more)
fix c++ compile errors
Add test example for kacmarz preconditioner since gcov indicated there was NONE
...
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| #
18790e9c
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| 14-May-2016 |
Mark Adams <cal2princeton@yahoo.com> |
Merge branch 'master' of bitbucket.org:petsc/petsc into mark/gamg-nullspacefix
|
| #
65002f03
|
| 14-May-2016 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'barry/make-functions-static'
|