hypre - OpenGrok history log for /petsc/src/mat/impls/hypre

Revision	Date	Author	Comments (<<< Hide modified files) (Show modified files >>>)
c69f721f	12-Jul-2018	Fande Kong <fdkong.jd@gmail.com>	Added MatZeroEntries_HYPRE Added MatZeroRows_HYPRE Make MatSetValues_HYPRE work for off-proc values Added tests for new hypre APIs Added MatGetRow_HYPRE and MatRestoreRowHypre Added a Hypre matr Added MatZeroEntries_HYPRE Added MatZeroRows_HYPRE Make MatSetValues_HYPRE work for off-proc values Added tests for new hypre APIs Added MatGetRow_HYPRE and MatRestoreRowHypre Added a Hypre matrix API: MatGetValues_HYPRE show more ... /petsc/.gitignore /petsc/config/BuildSystem/RDict.py /petsc/config/BuildSystem/args.py /petsc/config/BuildSystem/config/base.py /petsc/config/BuildSystem/config/compilerOptions.py /petsc/config/BuildSystem/config/compilers.py /petsc/config/BuildSystem/config/framework.py /petsc/config/BuildSystem/config/functions.py /petsc/config/BuildSystem/config/libraries.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/BlasLapack.py /petsc/config/BuildSystem/config/packages/Chaco.py 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75d48cdb	11-Jan-2018	Stefano Zampini <stefano.zampini@gmail.com>	MatIS: added implementation for PtAP operation supported P are {Seq\|MPI}(B)AIJ and HYPRE Interface for {MPI\|Seq}BAIJ and HYPRE code works, however: - local PtAP ops are missing for BAIJ - MatCreateS MatIS: added implementation for PtAP operation supported P are {Seq\|MPI}(B)AIJ and HYPRE Interface for {MPI\|Seq}BAIJ and HYPRE code works, however: - local PtAP ops are missing for BAIJ - MatCreateSubMatr* ops are missing for HYPRE (will be added in a separate branch) If requested, carry over the l2l representation of P by attaching it to the resulting mat This is needed by the MFEM constructor for BDDC added few more tests to ex23.c L2L storage is disabled because of a bug in MatDestroySubMatrices that will be fixed in a separate branch show more ... /petsc/config/BuildSystem/config/base.py /petsc/config/BuildSystem/config/framework.py /petsc/config/BuildSystem/config/package.py 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95452b02	16-Apr-2018	Patrick Sanan <patrick.sanan@gmail.com>	Man pages: add newlines after "Notes:" This allows for proper formatting from sowing. On OS X (using gsed, not the default BSD sed), from the PETSc root directory: find src include -type f \( Man pages: add newlines after "Notes:" This allows for proper formatting from sowing. On OS X (using gsed, not the default BSD sed), from the PETSc root directory: find src include -type f \( -name ".c" -or -name ".h" -or -name ".cxx" \) \| xargs gsed -i 's/Notes\s:\s\(\w.\)/Notes:\n \1/' This adds a newline and 4 spaces whenever "Notes:" is followed by any "word" character, in any .c, .h, or .cxx file in src/ or include/ show more ... /petsc/config/BuildSystem/RDict.py /petsc/config/BuildSystem/args.py /petsc/config/BuildSystem/config/base.py /petsc/config/BuildSystem/config/compilerOptions.py /petsc/config/BuildSystem/config/compilers.py /petsc/config/BuildSystem/config/framework.py /petsc/config/BuildSystem/config/functions.py /petsc/config/BuildSystem/config/libraries.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/Chaco.py /petsc/config/BuildSystem/config/packages/Chombo.py /petsc/config/BuildSystem/config/packages/MPI.py /petsc/config/BuildSystem/config/packages/MUMPS.py 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/petsc/src/vec/is/ao/impls/basic/aobasic.c /petsc/src/vec/is/ao/impls/mapping/aomapping.c /petsc/src/vec/is/ao/impls/memscalable/aomemscalable.c /petsc/src/vec/is/is/interface/index.c /petsc/src/vec/is/is/utils/iscoloring.c /petsc/src/vec/is/is/utils/isdiff.c /petsc/src/vec/is/sf/interface/sf.c /petsc/src/vec/is/utils/isltog.c /petsc/src/vec/is/utils/pmap.c /petsc/src/vec/is/utils/vsectionis.c /petsc/src/vec/vec/interface/ftn-custom/zvectorf.c /petsc/src/vec/vec/interface/rvector.c /petsc/src/vec/vec/interface/vector.c /petsc/src/vec/vec/utils/projection.c /petsc/src/vec/vec/utils/vecstash.c /petsc/src/vec/vec/utils/vinv.c /petsc/src/vec/vscat/impls/vpscat.h /petsc/src/vec/vscat/impls/vpscat_mpi1.h /petsc/src/vec/vscat/impls/vscat.c /petsc/src/vec/vscat/interface/dlregisvecscat.c /petsc/src/vec/vscat/interface/vscreate.c /petsc/systems/Apple/OSX/bin/makedmg /petsc/systems/Apple/OSX/examples/PETSc cocoa example/PETSc cocoa example.xcodeproj/project.pbxproj 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b0baa260	01-Apr-2018	Satish Balay <balay@mcs.anl.gov>	Merge remote-tracking branch 'origin/balay/update-hypre-v2.14.0' /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/MPI.py /petsc/config/BuildSystem/config/packages/hypre.py /petsc/config/BuildSystem/config/packages/make.py /petsc/config/BuildSystem/config/packages/metis.py /petsc/config/BuildSystem/config/packages/petsc4py.py /petsc/config/PETSc/options/libraryOptions.py /petsc/config/examples/arch-cray-xc40-knl-opt.py /petsc/config/examples/arch-linux-knl.py /petsc/config/petsc_harness.sh /petsc/include/petsc/finclude/petscvec.h /petsc/include/petsc/private/dmnetworkimpl.h /petsc/include/petsc/private/vecimpl.h /petsc/include/petscdmnetwork.h /petsc/include/petscsys.h /petsc/include/petscvec.h /petsc/lib/petsc/conf/test /petsc/src/dm/dt/interface/dtfe.c /petsc/src/dm/impls/forest/p4est/petsc_p4est_package.c /petsc/src/dm/impls/network/network.c /petsc/src/dm/impls/network/networkcreate.c /petsc/src/dm/impls/plex/examples/tests/ex26.c /petsc/src/dm/impls/plex/plexcreate.c /petsc/src/dm/impls/plex/plexfem.c /petsc/src/dm/impls/plex/plexply.c /petsc/src/dm/interface/dlregisdmdm.c /petsc/src/docs/tex/manual/part2.tex /petsc/src/docs/website/documentation/changes/dev.html /petsc/src/ksp/ksp/examples/tests/ex56.c /petsc/src/ksp/ksp/examples/tests/output/ex49_1_alt.out /petsc/src/ksp/ksp/examples/tutorials/network/ex1.c /petsc/src/ksp/ksp/examples/tutorials/network/ex1_nest.c /petsc/src/ksp/ksp/examples/tutorials/network/ex2.c /petsc/src/ksp/ksp/interface/dlregisksp.c /petsc/src/ksp/pc/impls/composite/composite.c /petsc/src/mat/examples/tests/ex134.c /petsc/src/mat/examples/tests/ex135.c /petsc/src/mat/impls/aij/mpi/mmaij.c /petsc/src/mat/impls/aij/mpi/mpiaij.c /petsc/src/mat/impls/aij/seq/aij.h /petsc/src/mat/impls/aij/seq/aijperm/aijperm.c mhypre.c /petsc/src/mat/impls/mffd/mffd.c /petsc/src/mat/impls/sbaij/seq/relax.h /petsc/src/mat/impls/sell/seq/sell.c 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4099cc6b	18-Jul-2017	Barry Smith <bsmith@mcs.anl.gov>	Add subtype concept to SeqAIJ matrices Introduced -mat_seqaij_type <seqaijperm, ...> MatSeqAIJSetType() to allow running code written for AIJ to work with any subtype. See MatSeqAIJRegister() and Ma Add subtype concept to SeqAIJ matrices Introduced -mat_seqaij_type <seqaijperm, ...> MatSeqAIJSetType() to allow running code written for AIJ to work with any subtype. See MatSeqAIJRegister() and MatSeqAIJRegisterAll() for registering new subtypes Use export PETSC_OPTIONS="-mat_seqaij_type seqaijperm -malloc_test" make alltests to run the entire test suite using an alternative subclass, in this case seqaijperm. This will produce output regarding the different name for the matrix class but otherwise should produce no errors. This was implemented to 1) allow easy testing of an MKL subtype and 2) to allow users to easily use the MKL subtype without changing their code. Also fixes several bugs in seqaijperm, if it isn't tested its broken. Commit-type: testing-fix,style-fix, feature Funded-by: ECP Project: MKL Time: 32 hours Reported-by: Irina Sokolova <irina.sokolova@intel.com> show more ... /petsc/.gitignore /petsc/.gitmessage /petsc/bin/maint/builddist /petsc/bin/maint/exampleslog.py /petsc/bin/maint/htmltemplate.py /petsc/bin/petsc_gen_xdmf.py /petsc/bin/petscnagupgrade.py /petsc/config/BuildSystem/config/compilers.py /petsc/config/BuildSystem/config/framework.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/BlasLapack.py /petsc/config/BuildSystem/config/packages/MPI.py /petsc/config/BuildSystem/config/packages/Triangle.py /petsc/config/BuildSystem/config/packages/ctetgen.py /petsc/config/BuildSystem/config/packages/cuda.py /petsc/config/BuildSystem/config/packages/metis.py /petsc/config/BuildSystem/config/packages/mkl_cpardiso.py /petsc/config/BuildSystem/config/packages/mkl_pardiso.py /petsc/config/BuildSystem/config/packages/petsc4py.py 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68299464	08-May-2017	Stefano Zampini <stefano.zampini@gmail.com>	MatHYPRE: fix warnings from nightly 64bit builds mhypre.c
68ec7858	06-May-2017	Stefano Zampini <stefano.zampini@gmail.com>	added MatScale MatZeroRowsColumns and MatMissingDiagonal to MATHYPRE /petsc/.travis.yml /petsc/bin/PetscBinaryIOTrajectory.py /petsc/bin/maint/buildtest /petsc/bin/maint/checkBuilds.py /petsc/bin/maint/convertExamples.py /petsc/bin/maint/convertExamplesUtils.py /petsc/bin/maint/examplesMkParse.py /petsc/bin/maint/examplesWalker.py /petsc/bin/maint/generateetags.py /petsc/bin/maint/normalizeOutput.py /petsc/bin/maint/runhtml.py /petsc/bin/maint/toclapack.sh /petsc/bin/petsc_conf.py /petsc/bin/petscdiff /petsc/bin/win32fe/win32fe.exe /petsc/bin/win32fe/win32feutils.dll /petsc/config/BuildSystem/config/compilers.py /petsc/config/BuildSystem/config/framework.py /petsc/config/BuildSystem/config/libraries.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/BlasLapack.py /petsc/config/BuildSystem/config/packages/Chaco.py /petsc/config/BuildSystem/config/packages/MPI.py 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fbfcfee5	19-Dec-2016	Barry Smith <bsmith@mcs.anl.gov>	Remove the use and definition of __FUNCT__ throughout the code Since all modern C/C++ compilers provide this functionality we no longer need to provide it manually in PETSc Time: 1.5 hours Thanks-t Remove the use and definition of __FUNCT__ throughout the code Since all modern C/C++ compilers provide this functionality we no longer need to provide it manually in PETSc Time: 1.5 hours Thanks-to: Andreas Mang <andreas@ices.utexas.edu> show more ... /petsc/bin/maint/buildtest /petsc/bin/maint/confignightly/ps4-2 /petsc/bin/maint/confignightly/ps4-3 /petsc/bin/maint/confignightly/ps4-4 /petsc/bin/maint/toclapack.sh /petsc/config/BuildSystem/config/compilerOptions.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/Chombo.py /petsc/config/BuildSystem/config/packages/MOAB.py /petsc/config/BuildSystem/config/packages/MPICH.py /petsc/config/BuildSystem/config/packages/OpenMPI.py 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470b59a3	16-Dec-2016	Stefano Zampini <stefano.zampini@gmail.com>	MatHYPRE: remove prints /petsc/src/mat/impls/aij/mpi/mpimatmatmatmult.c mhypre.c
3dad0653	14-Dec-2016	stefano_zampini <stefano.zampini@gmail.com>	Added support for MatMatMatMult_transpose_aij_aij actually, boomerAMGBuildCoarseOperator needs Rt and not R to perform RAP. Removed HYPRE support from MatMatMatMult_AIJ_AIJ_AIJ and added the compose Added support for MatMatMatMult_transpose_aij_aij actually, boomerAMGBuildCoarseOperator needs Rt and not R to perform RAP. Removed HYPRE support from MatMatMatMult_AIJ_AIJ_AIJ and added the composed to the AIJ objects show more ... /petsc/src/mat/examples/tests/ex115.c /petsc/src/mat/impls/aij/mpi/mpiaij.c /petsc/src/mat/impls/aij/mpi/mpimatmatmatmult.c /petsc/src/mat/impls/aij/seq/aij.c /petsc/src/mat/impls/aij/seq/matmatmatmult.c mhypre.c
1c92d2d0	14-Dec-2016	stefano_zampini <stefano.zampini@gmail.com>	MatHYPRE: fix warning from 64bit indices build /petsc/src/mat/examples/tests/ex115.c /petsc/src/mat/examples/tests/makefile mhypre.c
d501dc42	14-Dec-2016	stefano_zampini <stefano.zampini@gmail.com>	MatHYPRE: added native support for MatMatMult mhypre.c
e3977e59	14-Dec-2016	stefano_zampini <stefano.zampini@gmail.com>	MatHYPRE: zerosized Insert/Add values seems not supported from HYPRE mhypre.c
20e1dc0d	14-Dec-2016	stefano_zampini <stefano.zampini@gmail.com>	MatSeqAIJ and MatMPIAIJ: added support for MatMatMatMult using HYPRE /petsc/src/mat/impls/aij/mpi/mpimatmatmatmult.c /petsc/src/mat/impls/aij/seq/matmatmatmult.c mhypre.c
5e5acdf2	14-Dec-2016	stefano_zampini <stefano.zampini@gmail.com>	MatSeqAIJ and MatMPIAIJ: add support for MatMatMult via hypre /petsc/src/mat/impls/aij/mpi/mpimatmatmult.c /petsc/src/mat/impls/aij/seq/matmatmult.c mhypre.c
4cc28894	14-Dec-2016	stefano_zampini <stefano.zampini@gmail.com>	MatHYPRE: reworked PtAPs to allow MAT_REUSE_MATRIX /petsc/src/mat/examples/tests/ex115.c /petsc/src/mat/examples/tests/makefile /petsc/src/mat/impls/aij/mpi/mpiptap.c mhypre.c
6f231fbd	13-Dec-2016	stefano_zampini <stefano.zampini@gmail.com>	MatSeqAIJ: added support for using boomerAMGBuildCoarseOperator for PtAP /petsc/src/mat/examples/tests/ex115.c /petsc/src/mat/examples/tests/makefile /petsc/src/mat/examples/tests/output/ex115_5.out /petsc/src/mat/impls/aij/seq/matptap.c mhypre.c
613e5ff0	13-Dec-2016	stefano_zampini <stefano.zampini@gmail.com>	MatHYPRE: new internal APIs to make use of boomerAMGBuildCoarseOperator consistently mhypre.c
6d2a658f	13-Dec-2016	stefano_zampini <stefano.zampini@gmail.com>	MatHYPRE: make sure the MatHYPRE will always have row_starts and col_starts available /petsc/config/BuildSystem/config/packages/sowing.py /petsc/config/builder.py /petsc/config/examples/arch-c-exodus-dbg-builder.py /petsc/include/petscblaslapack.h /petsc/include/petscblaslapack_mangle.h /petsc/include/petscblaslapack_stdcall.h /petsc/include/petscksp.h /petsc/include/petscmat.h /petsc/include/petscpc.h /petsc/src/docs/tex/manual/part2.tex /petsc/src/docs/tex/petsc.bib /petsc/src/docs/website/documentation/changes/dev.html /petsc/src/ksp/ksp/examples/tutorials/ex59.c /petsc/src/ksp/ksp/examples/tutorials/makefile /petsc/src/ksp/ksp/impls/fetidp/fetidp.c /petsc/src/ksp/pc/impls/bddc/bddc.c /petsc/src/ksp/pc/impls/bddc/bddc.h /petsc/src/ksp/pc/impls/bddc/bddcfetidp.c /petsc/src/ksp/pc/impls/bddc/bddcgraph.c /petsc/src/ksp/pc/impls/bddc/bddcprivate.c /petsc/src/ksp/pc/impls/bddc/bddcprivate.h /petsc/src/ksp/pc/impls/bddc/bddcscalingbasic.c /petsc/src/ksp/pc/impls/bddc/bddcschurs.c /petsc/src/ksp/pc/impls/bddc/bddcstructs.h /petsc/src/ksp/pc/impls/is/pcis.c /petsc/src/ksp/pc/impls/is/pcis.h /petsc/src/mat/examples/tests/ex115.c /petsc/src/mat/examples/tests/ex23.c /petsc/src/mat/examples/tests/output/ex23_1.out /petsc/src/mat/examples/tests/output/ex23_2.out /petsc/src/mat/examples/tests/output/ex23_3.out /petsc/src/mat/examples/tests/output/ex23_4.out /petsc/src/mat/impls/aij/mpi/mpiaij.c /petsc/src/mat/impls/aij/mpi/mumps/mumps.c /petsc/src/mat/impls/aij/seq/mkl_pardiso/mkl_pardiso.c /petsc/src/mat/impls/dense/seq/dense.c mhypre.c /petsc/src/mat/impls/is/matis.c /petsc/src/mat/impls/is/matis.h /petsc/src/mat/interface/matrix.c /petsc/src/mat/partition/impls/scotch/scotch.c /petsc/src/snes/examples/tutorials/output/ex12_p4est_full_q2_nonconformal_parallel_bddc.out /petsc/src/snes/examples/tutorials/output/ex12_p4est_full_q2_nonconformal_parallel_bddcfas.out /petsc/src/snes/examples/tutorials/output/ex12_tri_bddc.out /petsc/src/snes/examples/tutorials/output/ex62_fetidp_2d_quad.out /petsc/src/snes/examples/tutorials/output/ex62_fetidp_2d_tri.out /petsc/src/snes/examples/tutorials/output/ex62_fetidp_3d_hex.out /petsc/src/snes/examples/tutorials/output/ex62_fetidp_3d_tet.out /petsc/src/sys/utils/ctable.c
fa92c42c	10-Dec-2016	stefano_zampini <stefano.zampini@gmail.com>	MatHYPRE: hypre may return rend/cend smaller than rstart/cstart when there are no local rows/columns /petsc/.gitignore /petsc/bin/maint/buildtest /petsc/bin/maint/generatefortranstubs.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/Trilinos.py /petsc/config/BuildSystem/config/packages/Zoltan.py /petsc/config/BuildSystem/config/packages/pflotran.py /petsc/config/BuildSystem/config/packages/pragmatic.py /petsc/config/BuildSystem/config/packages/sowing.py /petsc/config/PETSc/Regression.py /petsc/config/PETSc/options/fortranCPP.py /petsc/config/builder.py /petsc/config/builder2.py /petsc/config/configure.py /petsc/config/examples/arch-cuda-double.py /petsc/config/examples/arch-cuda-single.py /petsc/config/examples/arch-linux-pkgs-dbg-ftn-interfaces.py /petsc/config/examples/arch-linux-pkgs-threadcomm.py /petsc/config/examples/arch-mswin-cxx-cmplx.py 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