Merge branch 'psanan/docs-sphinx-man-pages' into 'main'Integrate Man Pages into Sphinx DocsCloses #1132 and #1015See merge request petsc/petsc!4989
Docs: bulk add backticks to .seealso man page fields```pythonimport osimport reimport fileinputdef _process_word(word): comma = "," if word.endswith(",") else "" return "`%s`%s" % (wor
Docs: bulk add backticks to .seealso man page fields```pythonimport osimport reimport fileinputdef _process_word(word): comma = "," if word.endswith(",") else "" return "`%s`%s" % (word.rstrip(","), comma)def _process_stripped_line(line): return " ".join(map(_process_word, line.split()))start_pattern = re.compile(r"^( *\.seealso:? )(.*$)")def process_file(filename_full): with fileinput.FileInput(filename_full, inplace=True) as f: in_block = False for line in f: line_stripped = line.strip() # end ".seealso blocks" on a blank line or C-style comment close line_modified = None if not line_stripped: in_block = False elif line_stripped.endswith("*/"): in_block = False else: match = re.match(start_pattern, line) # not stripped line if match: indent = " " * len(match.group(1)) in_block = True line_modified = match.group( 1) + _process_stripped_line( match.group(2).strip()) elif in_block: line_modified = indent + _process_stripped_line( line_stripped) if line_modified: print(line_modified) # prints to the file else: print(line, end="") # prints to the fileBASE_DIRS = ["src", "include"]EXT = [".c", ".cxx", ".cpp", ".cu", ".h", ".hpp", ".hxx"]EXCLUDE_DIRS = ["tests", "tutorials", "ftn-auto", "ftn-custom", "benchmarks"]def main(): """ Process everything """ for base in BASE_DIRS: for root, dirs, files in os.walk(base): for filename in files: if os.path.splitext(filename)[1] in EXT: filename_full = os.path.join(root, filename) print("FILE ---", filename_full) process_file(filename_full) for exclude_dir in EXCLUDE_DIRS: if exclude_dir in dirs: dirs.remove(exclude_dir)if __name__ == "__main__": main()```
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Remove the rest of the PetscCheckFalse() from the mat directoryCommit-type: housekeeping/spend 45m
Enable PETSC_ATTRIBUTE_FORMAT()
Cleanup of introduction of PetscCall()* remove bogus error flags from XXXBegin()/End() macros such as PetscOptionsBegin()/End()* rename for consistency certain XXXBegin()/End() macros such as Mat
Cleanup of introduction of PetscCall()* remove bogus error flags from XXXBegin()/End() macros such as PetscOptionsBegin()/End()* rename for consistency certain XXXBegin()/End() macros such as MatPreallocateInitialize()/Finalize()* fix many lingering ierr = XXX that arose from multiline function calls* sync slepc/hpddm - to use snapshots with the same changesCommit-type: error-checking, style-fix/spend 8h
Remove some PetscCheckFalse()
Do not wrap PetscTryMethod() PetscUseMethod() in PetscCallIt produces shadow declarations and also serves no purpose since these macros do the appropriate error checking alreadyThere may be addit
Do not wrap PetscTryMethod() PetscUseMethod() in PetscCallIt produces shadow declarations and also serves no purpose since these macros do the appropriate error checking alreadyThere may be additions needed for running with a static error checkerCommit-type: error-checking/spend 15mReported-by:Lisandro Dalcin <dalcinl@gmail.com>
Mat: support COO for MatHypre
The great renaming:- CHKERRQ() -> PetscCall()- CHKERRV() -> PetscCallVoid()- CHKERRMPI() -> PetscCallMPI()- CHKERRABORT() -> PetscCallAbort()- CHKERRCONTINUE() -> PetscCallContinue()- CHKERRXX
The great renaming:- CHKERRQ() -> PetscCall()- CHKERRV() -> PetscCallVoid()- CHKERRMPI() -> PetscCallMPI()- CHKERRABORT() -> PetscCallAbort()- CHKERRCONTINUE() -> PetscCallContinue()- CHKERRXX() -> PetscCallThrow()- CHKERRCXX() -> PetscCallCXX()- CHKERRCUDA() -> PetscCallCUDA()- CHKERRCUBLAS() -> PetscCallCUBLAS()- CHKERRCUSPARSE() -> PetscCallCUSPARSE()- CHKERRCUSOLVER() -> PetscCallCUSOLVER()- CHKERRCUFFT() -> PetscCallCUFFT()- CHKERRCURAND() -> PetscCallCURAND()- CHKERRHIP() -> PetscCallHIP()- CHKERRHIPBLAS() -> PetscCallHIPBLAS()- CHKERRHIPSOLVER() -> PetscCallHIPSOLVER()- CHKERRQ_CEED() -> PetscCallCEED()- CHKERR_FORTRAN_VOID_FUNCTION() -> PetscCallFortranVoidFunction()- CHKERRMKL() -> PetscCallMKL()- CHKERRMMG() -> PetscCallMMG()- CHKERRMMG_NONSTANDARD() -> PetscCallMMG_NONSTANDARD()- CHKERRCGNS() -> PetscCallCGNS()- CHKERRPTSCOTCH() -> PetscCallPTSCOTCH()- CHKERRSTR() -> PetscCallSTR()- CHKERRTC() -> PetscCallTC()
pluck ~1000 low hanging PetscCheckFalse() -> PetscCheck() fruit
chkerr and friends wrapped
MatCreate_HYPRE: do not force block size 1
Merge branch 'jacobf/2022-01-05/c99' into 'main'Feature: C99 and C++11See merge request petsc/petsc!4700
rename PetscAssert() -> PetscCheck() and PetscAssertDebug() -> PetscAssert()
make PetscStackCallStandard variadic
add PetscAssert() and PetscAssertFalse()
make PetscInfo() variadic
SETERRQ[1-9]+ begone
Merge remote-tracking branch 'origin/release'
MATHYPRE: fix MAT_REUSE_MATRIX case when converting to AIJ
update documentation and options database of MatProductSetAlgorithm()
MATHYPRE: silence warnings
Stash communicators previously used for external packages so that they may be reused.Previously we used MPI_Comm_dup() and free() but for some MPI implementations including MPI Spectrum the MPI_Com
Stash communicators previously used for external packages so that they may be reused.Previously we used MPI_Comm_dup() and free() but for some MPI implementations including MPI Spectrum the MPI_Comm_free() does not actually return the communicator so eventually they run out.Commit-type: portability-fix\spend 3hReported-by: Elias Karabelas <elias.karabelas@uni-graz.at>
applied attribute format fixes to mat headers
- Replace the current CUPM initialization infrastructure with PetscDevice.- Remove -petsc_use_default_null_stream and -[cuda|hip]_synchronize options- Remove PetscCUDASynchronize and PetscHIPSynchr
- Replace the current CUPM initialization infrastructure with PetscDevice.- Remove -petsc_use_default_null_stream and -[cuda|hip]_synchronize options- Remove PetscCUDASynchronize and PetscHIPSynchronize- Remove PetscCUDAInitialize(), PetscCUDAInitializeCheck(), PetscHIPInitialize(), andPetscHIPInitializeCheck()- Remove PetscCUBLASInitializeHandle(), PetscCUSOLVERDnInitializeHandle(),PetscHIPBLASInitializeHandle(), and PetscHIPSOLVERInitializeHandle().- Remove petsc_gputimer_begin and petsc_gputimer_begin- Add -device_enable, -device_select and -device_view options- Replace -[cuda|hip]_device with split options -device_enable_[cuda|hip] and -device_select_[cuda|hip]- Replace -[cuda|hip]_view with -device_view_[cuda|hip]- Add PetscDeviceInitType- Add PetscDeviceInitialize() and PetscDeviceInitialized()- Add PetscDeviceView()
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