| #
a166d259
|
| 15-Mar-2017 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/fix-plex-example-logging' into knepley/feature-plex-torus
* knepley/fix-plex-example-logging: (151 commits)
Plex ex12: Added logging stages
Plex ex1: Added logging stages
Merge branch 'knepley/fix-plex-example-logging' into knepley/feature-plex-torus
* knepley/fix-plex-example-logging: (151 commits)
Plex ex12: Added logging stages
Plex ex1: Added logging stages
update to latest hypre tag on github
fix 'inf' vs 'Inf' diff wrt vec_vec_utils_tagger_tutorials-ex1_8,9,18,19
MatSetOption(mat,MAT_IGNORE_ZERO_ENTRIES,PETSC_TRUE) no longer applies to zero values set or added to the matrix diagonal, they are now not ignored and are included in the matrix nonzero structure. This is useful for Jacobians passed to TS.
replace use/mention of depreciated -log_summary in many places
add extchem.py which was written years ago but never put in the distribution (hence it is broken).
petsc4py: update to snapshot with MatGetSubMatrices -> MatCreateSubMatrices etc API changes
Minor fixes for tchem examples due to changes in PETSc infrastructure
update webpage about API changes
add help menu for MatCreateSubMatricesMPI()
PetscCMPLX: assume type punning is safe
rename struct Mat_SubMat -> Mat_SubSppt
add a little information to the manual about using tchem
rename MatCreateSubMatrixComposite -> MatCreateSubMatrixVirtual; Mat_SubMatrix -> Mat_SubVirtual
need to protect the \ passed on the makefile on my Mac
Bib: Updated ref
update src/mat/examples/tests/output/ex23_#.out
rename MatGetSubMat -> MatCreateSubMat
Mark MatCreateMPIAIJWithSplitArrays() and MatMPIAIJSetPreallocationCSR() with MAT_NO_OFF_PROC_ENTRIES
...
Conflicts:
src/dm/impls/plex/examples/tests/ex1.c
src/dm/impls/plex/examples/tests/ex12.c
show more ...
|
| #
851d29aa
|
| 15-Mar-2017 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/fix-plex-example-logging' into knepley/feature-plex-tests-new
* knepley/fix-plex-example-logging: (151 commits)
Plex ex12: Added logging stages
Plex ex1: Added logging stag
Merge branch 'knepley/fix-plex-example-logging' into knepley/feature-plex-tests-new
* knepley/fix-plex-example-logging: (151 commits)
Plex ex12: Added logging stages
Plex ex1: Added logging stages
update to latest hypre tag on github
fix 'inf' vs 'Inf' diff wrt vec_vec_utils_tagger_tutorials-ex1_8,9,18,19
MatSetOption(mat,MAT_IGNORE_ZERO_ENTRIES,PETSC_TRUE) no longer applies to zero values set or added to the matrix diagonal, they are now not ignored and are included in the matrix nonzero structure. This is useful for Jacobians passed to TS.
replace use/mention of depreciated -log_summary in many places
add extchem.py which was written years ago but never put in the distribution (hence it is broken).
petsc4py: update to snapshot with MatGetSubMatrices -> MatCreateSubMatrices etc API changes
Minor fixes for tchem examples due to changes in PETSc infrastructure
update webpage about API changes
add help menu for MatCreateSubMatricesMPI()
PetscCMPLX: assume type punning is safe
rename struct Mat_SubMat -> Mat_SubSppt
add a little information to the manual about using tchem
rename MatCreateSubMatrixComposite -> MatCreateSubMatrixVirtual; Mat_SubMatrix -> Mat_SubVirtual
need to protect the \ passed on the makefile on my Mac
Bib: Updated ref
update src/mat/examples/tests/output/ex23_#.out
rename MatGetSubMat -> MatCreateSubMat
Mark MatCreateMPIAIJWithSplitArrays() and MatMPIAIJSetPreallocationCSR() with MAT_NO_OFF_PROC_ENTRIES
...
Conflicts:
src/dm/impls/plex/examples/tests/ex12.c
show more ...
|
| #
c90b701e
|
| 14-Mar-2017 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'master' into knepley/feature-plex-pragmatic-parallel
* master: (1379 commits)
Minor fixes for tchem examples due to changes in PETSc infrastructure
update webpage about API changes
Merge branch 'master' into knepley/feature-plex-pragmatic-parallel
* master: (1379 commits)
Minor fixes for tchem examples due to changes in PETSc infrastructure
update webpage about API changes
add help menu for MatCreateSubMatricesMPI()
rename struct Mat_SubMat -> Mat_SubSppt
add a little information to the manual about using tchem
rename MatCreateSubMatrixComposite -> MatCreateSubMatrixVirtual; Mat_SubMatrix -> Mat_SubVirtual
need to protect the \ passed on the makefile on my Mac
Bib: Updated ref
update src/mat/examples/tests/output/ex23_#.out
rename MatGetSubMat -> MatCreateSubMat
Mark MatCreateMPIAIJWithSplitArrays() and MatMPIAIJSetPreallocationCSR() with MAT_NO_OFF_PROC_ENTRIES
superlu: libray is installed in PREFIX/lib64 - fix this to use PREFIX/lib
backport fixes cc105cc3 2b35c90a - required for 3bf428d - that was backported from master - 80c96bb
'echo -n' fails on opensolaris/osx - so avoid using it.
fix diffs in nightlybuilds due to options in ~/.petscrc
add Kelley03 to src/docs/tex/petsc.bib
build: determine moudles, mpi.h used during buildtime and print in 'info'
fix analyzer warnings
fix build failure on opensolaris - where -lm from flibs is removed due to -lm in cxxlibs. But then - only flib gets used for some configure tests [blaslapack, parms]
config: prefer __restrict over C99 restrict keyword
...
show more ...
|
| #
72f1dcff
|
| 13-Mar-2017 |
Satish Balay <balay@mcs.anl.gov> |
fix duplicate definitions warned by -Wredundant-decls
Also a bugfix? BLASdotu_ -> dotu
Reported-by: Till Martens <till.martens@dlr.de>
|
| #
0e168440
|
| 08-Mar-2017 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'master' of bitbucket.org:petsc/petsc
|
| #
8cc6944d
|
| 08-Mar-2017 |
Satish Balay <balay@mcs.anl.gov> |
Merge remote-tracking branch 'origin/hzhang/rename_matgetsubmats'
|
| #
7dae84e0
|
| 07-Mar-2017 |
Hong Zhang <hzhang@mcs.anl.gov> |
rename MatGetSubMat -> MatCreateSubMat
|
| #
9137bce6
|
| 24-Dec-2016 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'barry/remove-funct'
|
| #
b90ca41c
|
| 24-Dec-2016 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'barry/fix-matreuse'
|
| #
cf37664f
|
| 23-Dec-2016 |
Barry Smith <bsmith@mcs.anl.gov> |
Add more error checks for use of MatReuse; change MatTranspose() to use MatReuse as used by other functions
Time: 2.5 hours
Reported-by: Stefano Zampini <stefano.zampini@gmail.com>, Eric Chamberlan
Add more error checks for use of MatReuse; change MatTranspose() to use MatReuse as used by other functions
Time: 2.5 hours
Reported-by: Stefano Zampini <stefano.zampini@gmail.com>, Eric Chamberland <Eric.Chamberland@giref.ulaval.ca>
show more ...
|
| #
fbfcfee5
|
| 19-Dec-2016 |
Barry Smith <bsmith@mcs.anl.gov> |
Remove the use and definition of __FUNCT__ throughout the code
Since all modern C/C++ compilers provide this functionality we no longer need to provide it manually in PETSc
Time: 1.5 hours
Thanks-t
Remove the use and definition of __FUNCT__ throughout the code
Since all modern C/C++ compilers provide this functionality we no longer need to provide it manually in PETSc
Time: 1.5 hours
Thanks-to: Andreas Mang <andreas@ices.utexas.edu>
show more ...
|
| #
8f47d70b
|
| 15-Dec-2016 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'stefano_zampini/allow-late-matsetblocksizes'
|
| #
af6579a0
|
| 09-Dec-2016 |
Hong Zhang <hzhang@mcs.anl.gov> |
Merge branch 'hzhang/opt-matgetsubmatrices-rebased-v2'
|
| #
c10200c1
|
| 09-Sep-2016 |
Hong Zhang <hzhang@mcs.anl.gov> |
implement MatGetSubMatrices_MPIAIJ_single() to optimize MatGetSubMatrices_MPIAIJ() when ismax = 1
update src/mat/examples/tests/ex4.c for testing MatGetSubMatrices()
introduce ctable to remove nons
implement MatGetSubMatrices_MPIAIJ_single() to optimize MatGetSubMatrices_MPIAIJ() when ismax = 1
update src/mat/examples/tests/ex4.c for testing MatGetSubMatrices()
introduce ctable to remove nonscalable malloc C->rmap->N array for MatIncreaseOverlap_MPIAIJ_Once()
remove nonscalable d_p by using ctable
add MAT_SUBMAT_SINGLEIS to MatOption. Set this flag in PCSetUp_ASM() to
reduce MPI_AllReduce() in MatGetSubMatrices()
show more ...
|
| #
e51df6f4
|
| 09-Nov-2016 |
stefano_zampini <stefano.zampini@gmail.com> |
Merge branch 'master' into stefano_zampini/feature-pcbddc-saddlepoint
This is needed to deal with some changes in MatNullSpace from commit 9d2471e
|
| #
10c1f87b
|
| 27-Oct-2016 |
Toby Isaac <tisaac@uchicago.edu> |
Merge branch 'master' into tisaac/dmplex-feature-real-to-ref
I need updated PetscFE interfaces in what I'm going to do
* master: (603 commits)
parmetis: fix typo in testsuite
Added PETSC_HAVE_A
Merge branch 'master' into tisaac/dmplex-feature-real-to-ref
I need updated PetscFE interfaces in what I'm going to do
* master: (603 commits)
parmetis: fix typo in testsuite
Added PETSC_HAVE_ATTRIBUTEALIGNED flag to makefile
PCSetUp_SVD() used incorrect matrix for matrix size in parallel, also need to skip LAPACK call if matrix size is zero
strumpack: update to latest version 1.0.4
Remove valgrind warning about MPI_Allreduce() with uninitialized data
sed for test output that has atol convergence with quad precision
updated ex1_nest tests
fixed incorrect key value
fix: bad merge a69d34a
test: move runex78 to TESTEXAMPLES_C_NOTSINGLE
build: fix warnings
sys: update test to produce same result - irrespective of debug/opt build - and presence of ~/.petscrc
sys: src/sys/examples/tests/ex30.c -> src/sys/examples/tests/ex32.c to avoid conflict in master
Sed output, since quad precision reduces below atol on these tests
remove automatically generated matrix names from test output files since can be different
Fixes for MatMPIXXXSetPreallocation(), they were not reentrant, since they kept the information used for matrix-vector products
GAMG: fix PCView_GAMG() format - and update output/ex56_0.out
superlu_dist: 64-bit-indices fix https://github.com/xiaoyeli/superlu_dist/issues/4
Add SNESSetDivergenceTolerance / -snes_divergence_tolerance.
fixed unit read in Plex
...
show more ...
|
| #
3e97621d
|
| 25-Oct-2016 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'barry/fix-matmpixxxsetpreallocation-reentrant'
|
| #
cb7b82dd
|
| 23-Oct-2016 |
Barry Smith <bsmith@mcs.anl.gov> |
Fixes for MatMPIXXXSetPreallocation(), they were not reentrant, since they kept the information used for matrix-vector products
from the previous load as well as the incorrectly sized aij->B matrix.
Fixes for MatMPIXXXSetPreallocation(), they were not reentrant, since they kept the information used for matrix-vector products
from the previous load as well as the incorrectly sized aij->B matrix.
Time: 1.75 hours
Reported-by: Satish Balay <balay@mcs.anl.gov>
show more ...
|
| #
e923053f
|
| 15-Oct-2016 |
stefano_zampini <stefano.zampini@gmail.com> |
Merge branch 'stefano_zampini/feature-convert-matnest-matis' into stefano_zampini/feature-pcbddc-saddlepoint
I have to merge it here, since there's an API addition for MatIS in stefano_zampini/featu
Merge branch 'stefano_zampini/feature-convert-matnest-matis' into stefano_zampini/feature-pcbddc-saddlepoint
I have to merge it here, since there's an API addition for MatIS in stefano_zampini/feature-pcbddc-saddlepoint
that prevents me to smoothly merge stefano_zampini/feature-convert-matnest-matis into next.
This will also facilitate merging stefano_zampini/feature-pcbddc-saddlepoint into master
Conflicts:
src/docs/website/documentation/changes/dev.html
show more ...
|
| #
46533700
|
| 15-Oct-2016 |
stefano_zampini <stefano.zampini@gmail.com> |
Mat: MatSetBlockSizes as a MATOP.
it allows to change the block sizes at a later stage.
For the block formats, the default op raise an error if the user tries to change them
|
| #
9e2f3faf
|
| 28-Sep-2016 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'master' of bitbucket.org:petsc/petsc
|
| #
1d951680
|
| 28-Sep-2016 |
Satish Balay <balay@mcs.anl.gov> |
Merge branch 'maint'
|
| #
3da8879a
|
| 28-Sep-2016 |
Satish Balay <balay@mcs.anl.gov> |
Merge remote-tracking branch 'origin/hzhang/fix_matview_mpisbaij' into maint
|
| #
d1654148
|
| 23-Sep-2016 |
Hong Zhang <hzhang@mcs.anl.gov> |
add missing MatView_MPISBAIJ_Binary()
Reported-by: Florian Lindner <mailinglists@xgm.de>
|
| #
602cab1b
|
| 29-Aug-2016 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'barry/add-matshell-matgetdiagonalblock-fortran'
|