Merge branch 'jacobf/2022-09-21/2-bike-2-shed' into 'main'

Feature: Bicycle Storage Facility 2

See merge request petsc/petsc!5661

source code format changes due to .clang-format changes

Merge branch 'jacobf/2022-09-17/slimmer-petscobject' into 'main'

Feature: Slimmer PetscObject

See merge request petsc/petsc!5649

Remove parent, parentid, flops, time, mem, and memchildren. Deprecate PetscLogObjectParent(), PetscLogObjectMemory(), and PetscNewLog()

Merge branch 'jolivet/fix-style-one-liners' into 'main'

Remove braces from one-liners w/o PetscCall()

See merge request petsc/petsc!5561

Remove braces from one-liners w/o PetscCall()

Merge branch 'barry/2022-08-21/clang-format-source' into 'main'

format repository with clang-format

See merge request petsc/petsc!5541

clang-format: convert PETSc sources to comply with clang-format

Merge branch 'barry/2022-06-13/make-one-line-if-call' into 'main'

Change if () { PetscCall() } three liner to one liner

See merge request petsc/petsc!5344

Change if () { PetscCall() } three liner and friends to one liners

for i in `git ls-files | grep "\.[ch]$"` ; do sed 's?\$?ZZZ?g' $i | tr '\n' '$' | sed 's?\([ ]*\)if (\([-;,.\*+=a-z0-9A-Z_>]*\)) {\

Change if () { PetscCall() } three liner and friends to one liners

for i in `git ls-files | grep "\.[ch]$"` ; do sed 's?\$?ZZZ?g' $i | tr '\n' '$' | sed 's?\([ ]*\)if (\([-;,.\*+=a-z0-9A-Z_>]*\)) {\$[ ]*PetscCall(\([- ._+=a-z0-9A-Z>*,()]*);\)\$[ ]*}\$?\1if (\2) PetscCall(\3$?g' | tr '$' '\n' | sed 's?ZZZ?$?g' > $i.joe ; mv $i.joe $i ; done

for i in `git ls-files | grep "\.[hc]$"` ; do sed 's?\$?ZZZ?g' $i | tr '\n' '$' | sed 's?\([ }else]*\)if (\([-;,.\*+=a-z0-9A-Z_>]*\)) {\$[ ]*PetscCall(\([- ._+=a-z0-9A-Z>*,()]*);\)\$\([ ]*\)} \([- ._+=a-z0-9A-Z>*,()]*);\)\$?\1if (\2) PetscCall(\3$\4\5$?g' | tr '$' '\n' | sed 's?ZZZ?$?g' > $i.joe ; mv $i.joe $i ; done

Yes, really ugly but Barry still cannot master awk

Commit-type: housekeeping

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Merge branch 'jacobf/2022-02-23/variadic-chkerr' into 'main'

Variadic CHKERRQ()

See merge request petsc/petsc!4889

The great renaming:

- CHKERRQ() -> PetscCall()
- CHKERRV() -> PetscCallVoid()
- CHKERRMPI() -> PetscCallMPI()
- CHKERRABORT() -> PetscCallAbort()
- CHKERRCONTINUE() -> PetscCallContinue()
- CHKERRXX

The great renaming:

- CHKERRQ() -> PetscCall()
- CHKERRV() -> PetscCallVoid()
- CHKERRMPI() -> PetscCallMPI()
- CHKERRABORT() -> PetscCallAbort()
- CHKERRCONTINUE() -> PetscCallContinue()
- CHKERRXX() -> PetscCallThrow()
- CHKERRCXX() -> PetscCallCXX()
- CHKERRCUDA() -> PetscCallCUDA()
- CHKERRCUBLAS() -> PetscCallCUBLAS()
- CHKERRCUSPARSE() -> PetscCallCUSPARSE()
- CHKERRCUSOLVER() -> PetscCallCUSOLVER()
- CHKERRCUFFT() -> PetscCallCUFFT()
- CHKERRCURAND() -> PetscCallCURAND()
- CHKERRHIP() -> PetscCallHIP()
- CHKERRHIPBLAS() -> PetscCallHIPBLAS()
- CHKERRHIPSOLVER() -> PetscCallHIPSOLVER()
- CHKERRQ_CEED() -> PetscCallCEED()
- CHKERR_FORTRAN_VOID_FUNCTION() -> PetscCallFortranVoidFunction()
- CHKERRMKL() -> PetscCallMKL()
- CHKERRMMG() -> PetscCallMMG()
- CHKERRMMG_NONSTANDARD() -> PetscCallMMG_NONSTANDARD()
- CHKERRCGNS() -> PetscCallCGNS()
- CHKERRPTSCOTCH() -> PetscCallPTSCOTCH()
- CHKERRSTR() -> PetscCallSTR()
- CHKERRTC() -> PetscCallTC()

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rewrote the PetscLL macros as functions to let the linter understand them. Also helps
reduce the staggering amount of code duplication in Mat

chkerr and friends wrapped

Merge branch 'jacobf/2022-01-05/c99' into 'main'

Feature: C99 and C++11

See merge request petsc/petsc!4700

rename PetscAssert() -> PetscCheck() and PetscAssertDebug() -> PetscAssert()

add PetscAssert() and PetscAssertFalse()

make PetscInfo() variadic

SETERRQ[1-9]+ begone

Merge branch 'jacobf/2021-12-09/attribute-format-mat' into 'main'

Feature: Attribute Format - Mat

See merge request petsc/petsc!4634

remove trailing newline from SETERRQ

applied attribute format fixes to mat headers

Merge branch 'hzhang/tao-pdipm-update' into 'main'

add PCSetPreSolve(); resolve remaining issues of MR3821

See merge request petsc/petsc!4120

address issues raised by Barry for MR3821
fix a comment in mumps.c
add PCSetPreSolve(); rm several private '#include'; cleanup KKTAddShifts(), PCPreSolve_PDIPM(), TaoSetup_PDIPM()
add 'requires: mump

address issues raised by Barry for MR3821
fix a comment in mumps.c
add PCSetPreSolve(); rm several private '#include'; cleanup KKTAddShifts(), PCPreSolve_PDIPM(), TaoSetup_PDIPM()
add 'requires: mumps' to src/tao/constrained/tutorials/ex1.c' -- pdipm cannot handle zeropivot yet
update ex1 for distributed Hessian and Jacobians
update webmanual
update tao->gnorm0 and tao->step = mu in TaoSNESFunction_PDIPM_residual()

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Merge branch 'dalcinl/fix-null' into 'master'

Fix 0 -> NULL for pointers

See merge request petsc/petsc!3086