| #
256ff83f
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| 11-Sep-2013 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'master' into barry/wirth-fusion-materials
Conflicts:
src/ts/examples/tutorials/advection-diffusion-reaction/ex10.c
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| #
cc85fe4d
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| 04-Sep-2013 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'barry/dmvecmattypes' into barry/saws
Needed to work with version of PETSc that did not have constant calls to VecSetFromOptions() etc
Conflicts:
src/ksp/ksp/interface/ams/kspams.c
s
Merge branch 'barry/dmvecmattypes' into barry/saws
Needed to work with version of PETSc that did not have constant calls to VecSetFromOptions() etc
Conflicts:
src/ksp/ksp/interface/ams/kspams.c
src/snes/impls/composite/snescomposite.c
src/snes/impls/gs/snesgs.c
src/snes/impls/nasm/nasm.c
src/snes/impls/ngmres/snesngmres.c
show more ...
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| #
56f85f32
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| 01-Sep-2013 |
Barry Smith <bsmith@mcs.anl.gov> |
fix PetscObjectSAWsBlock() cannot call PETSc routines while locking SAWs because they may lock it also
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| #
3ded2ed9
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| 31-Aug-2013 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'master' into knepley/feature-plex-refine-3d
* master: (71 commits)
Sys: revert packed PetscMalloc to PetscMallocN in PetscCommBuildTwoSided_Allreduce
SNESMonitorCancel: enable fort
Merge branch 'master' into knepley/feature-plex-refine-3d
* master: (71 commits)
Sys: revert packed PetscMalloc to PetscMallocN in PetscCommBuildTwoSided_Allreduce
SNESMonitorCancel: enable fortran interface
PetscSection: Added docs for Fortran binding for VecSetValuesSection()
Vec: Removed old F90 binding for PetscSection
bgq: fix deadlock on bgq due to inconsistant values returned by getpwuid(getuid()) on runs with 256nodes [or 4096 cores]. This fix removes the reliance on PetscGetHomeDirectory() returning 'same' value across nodes. [using the fact that PetscOptionsInsertFile() uses HOMEDIR from node-0 only]
DMPlex: change order of assignment to appease -Wmaybe-initialized (gcc-4.8.1)
DMPlex: Fix 64-bit int problem in VTK
Mat: Fix for PetscSparseDenseMaxDot() for complex
Vec: Correct VecUniqueEntries() for 64-bit indices
MatSeqAIJGetArrayF90: add man pages and fix typo in MatDense version
SF docs: add link to summary page and fix title
Doc: Fixed DM code in manual
metis/parmetis: update to metis-5.1.0/parmetis-4.0.3 Also update the test output as the partitioning appears to have changed.
DMPlex: remove unused variables
blaslapack: update f,f2c tarballs to 3.4.2 version
DMPlex ex5: Added test for 2 face cohesive submesh - Fixed old tests for cohesive cell orientation
DMPlex: Put in depth label optimization
DMPlex: Fix flipping of fault normal
DMPlex: We label cells with only vertices on the fault, but they have no cone replacement
DMPlex: Fix translation to cohesive edges in 3D - They are labeled by the vertices they connect
...
Conflicts:
include/petscdmplex.h
show more ...
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| #
d45a07a7
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| 31-Aug-2013 |
Barry Smith <bsmith@mcs.anl.gov> |
SAWs now compiles and runs in PETSc with parallel PETSc
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| #
322b3bd8
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| 30-Aug-2013 |
Satish Balay <balay@mcs.anl.gov> |
Merge branch 'jed/is-view-from-options' into maint
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| #
72631b3e
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| 28-Aug-2013 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'master' into knepley/feature-dt-fem
* master:
DMPlex: Fix 64-bit int problem in VTK
Mat: Fix for PetscSparseDenseMaxDot() for complex
Vec: Correct VecUniqueEntries() for 64-bit i
Merge branch 'master' into knepley/feature-dt-fem
* master:
DMPlex: Fix 64-bit int problem in VTK
Mat: Fix for PetscSparseDenseMaxDot() for complex
Vec: Correct VecUniqueEntries() for 64-bit indices
MatSeqAIJGetArrayF90: add man pages and fix typo in MatDense version
SF docs: add link to summary page and fix title
Doc: Fixed DM code in manual
show more ...
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| #
de9f814b
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| 28-Aug-2013 |
Jed Brown <jedbrown@mcs.anl.gov> |
Merge branch 'maint'
* maint:
MatSeqAIJGetArrayF90: add man pages and fix typo in MatDense version
SF docs: add link to summary page and fix title
Doc: Fixed DM code in manual
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| #
774cf152
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| 28-Aug-2013 |
Jed Brown <jedbrown@mcs.anl.gov> |
MatSeqAIJGetArrayF90: add man pages and fix typo in MatDense version
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| #
8117f98b
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| 28-Aug-2013 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'master' into knepley/feature-dt-fem
* master: (211 commits)
Mat ex170: Comments
VTK: Small fix to error message (.vts to .vtu)
VTK: Small fix to error message
Fixed bib entries
Merge branch 'master' into knepley/feature-dt-fem
* master: (211 commits)
Mat ex170: Comments
VTK: Small fix to error message (.vts to .vtu)
VTK: Small fix to error message
Fixed bib entries
Bib: Updates
AO: fix erroneous processing of -ao_view and factor into AOViewFromOptions
doc: fix named argument in {Vec,Mat,DM}ViewFromOptions
Sys: add PetscDataTypeFromString() and test code
Mat: Should say that it has a nullspace in MatView()
parms: update tarball with fix for namespace conflict with metis
fix citation 'Golub_Varga_1961'
parmetis: update tarball to parmetis-4.0.2-p5 which fixes an install issue with cygwin
Sys Logging: revert parent traversal
fixed hdf5.py so that if self.libraries.compression is None the code still runs correctly
DMDA: fix bad cast of DM_DA to PetscObject
MatClique: follow DistMultiVec API changes
MatClique: remove unused variables
config cmakeboot: add C++ flags any time compiler is available
config OpenMP: check for C++ flag any time the compiler is available
replaced all left-over uses of a single PetscMalloc() to allocated multiple arrays: replaced with PetscMallocN() The only ones left are when the second array is set into the first array and one ugly usage in the MUMPS interface that cannot be easily fixed
...
Conflicts:
config/builder.py
src/dm/impls/plex/plexgeometry.c
show more ...
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| #
459e96c1
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| 28-Aug-2013 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'master' into knepley/feature-plex-refine-3d
* master: (273 commits)
Mat ex170: Comments
VTK: Small fix to error message (.vts to .vtu)
VTK: Small fix to error message
Fixed bib
Merge branch 'master' into knepley/feature-plex-refine-3d
* master: (273 commits)
Mat ex170: Comments
VTK: Small fix to error message (.vts to .vtu)
VTK: Small fix to error message
Fixed bib entries
Bib: Updates
AO: fix erroneous processing of -ao_view and factor into AOViewFromOptions
doc: fix named argument in {Vec,Mat,DM}ViewFromOptions
Sys: add PetscDataTypeFromString() and test code
Mat: Should say that it has a nullspace in MatView()
parms: update tarball with fix for namespace conflict with metis
fix citation 'Golub_Varga_1961'
parmetis: update tarball to parmetis-4.0.2-p5 which fixes an install issue with cygwin
Sys Logging: revert parent traversal
fixed hdf5.py so that if self.libraries.compression is None the code still runs correctly
DMDA: fix bad cast of DM_DA to PetscObject
MatClique: follow DistMultiVec API changes
MatClique: remove unused variables
config cmakeboot: add C++ flags any time compiler is available
config OpenMP: check for C++ flag any time the compiler is available
replaced all left-over uses of a single PetscMalloc() to allocated multiple arrays: replaced with PetscMallocN() The only ones left are when the second array is set into the first array and one ugly usage in the MUMPS interface that cannot be easily fixed
...
Conflicts:
include/petscdmplex.h
show more ...
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| #
c0c93d0e
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| 28-Aug-2013 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'master' into knepley/feature-dmda-section
* master: (287 commits)
Mat ex170: Comments
VTK: Small fix to error message (.vts to .vtu)
VTK: Small fix to error message
Fixed bib e
Merge branch 'master' into knepley/feature-dmda-section
* master: (287 commits)
Mat ex170: Comments
VTK: Small fix to error message (.vts to .vtu)
VTK: Small fix to error message
Fixed bib entries
Bib: Updates
AO: fix erroneous processing of -ao_view and factor into AOViewFromOptions
doc: fix named argument in {Vec,Mat,DM}ViewFromOptions
Sys: add PetscDataTypeFromString() and test code
Mat: Should say that it has a nullspace in MatView()
parms: update tarball with fix for namespace conflict with metis
fix citation 'Golub_Varga_1961'
parmetis: update tarball to parmetis-4.0.2-p5 which fixes an install issue with cygwin
Sys Logging: revert parent traversal
fixed hdf5.py so that if self.libraries.compression is None the code still runs correctly
DMDA: fix bad cast of DM_DA to PetscObject
MatClique: follow DistMultiVec API changes
MatClique: remove unused variables
config cmakeboot: add C++ flags any time compiler is available
config OpenMP: check for C++ flag any time the compiler is available
replaced all left-over uses of a single PetscMalloc() to allocated multiple arrays: replaced with PetscMallocN() The only ones left are when the second array is set into the first array and one ugly usage in the MUMPS interface that cannot be easily fixed
...
show more ...
|
| #
4b5a970c
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| 26-Aug-2013 |
Jed Brown <jedbrown@mcs.anl.gov> |
Merge branch 'jed/is-view-from-options'
Fix SEGV on -ao_view, which was being called from AOCreate.
* jed/is-view-from-options:
AO: fix erroneous processing of -ao_view and factor into AOViewFrom
Merge branch 'jed/is-view-from-options'
Fix SEGV on -ao_view, which was being called from AOCreate.
* jed/is-view-from-options:
AO: fix erroneous processing of -ao_view and factor into AOViewFromOptions
doc: fix named argument in {Vec,Mat,DM}ViewFromOptions
show more ...
|
| #
dba0e793
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| 25-Aug-2013 |
Jed Brown <jedbrown@mcs.anl.gov> |
doc: fix named argument in {Vec,Mat,DM}ViewFromOptions
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| #
0892935b
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| 23-Aug-2013 |
Matthew G. Knepley <knepley@gmail.com> |
Mat: Should say that it has a nullspace in MatView()
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| #
609189e8
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| 21-Aug-2013 |
Hong Zhang <hzhang@mcs.anl.gov> |
Merge branch 'master' of bitbucket.org:petsc/petsc
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| #
1c146dcc
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| 21-Aug-2013 |
Jed Brown <jedbrown@mcs.anl.gov> |
Merge branch 'placasse/fix-matsetoption-collective' into maint
* placasse/fix-matsetoption-collective:
MatSetOption not always logically collective.
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| #
1165305d
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| 20-Aug-2013 |
Jed Brown <jedbrown@mcs.anl.gov> |
Merge branch 'placasse/fix-matsetoption-collective'
* placasse/fix-matsetoption-collective:
MatSetOption not always logically collective.
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| #
9b921294
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| 17-Aug-2013 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'barry/improve-memory-logging'
Conflicts:
src/ksp/pc/impls/redundant/redundant.c
src/mat/interface/matnull.c
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| #
82a130fb
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| 13-Aug-2013 |
Patrick Lacasse <patrick.m.lacasse@gmail.com> |
MatSetOption not always logically collective.
The PetscValidLogicalCollectiveBool(mat,flg,3) should not be
tested for non-logically collective op.
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| #
e88ab3e4
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| 05-Aug-2013 |
Hong Zhang <hzhang@mcs.anl.gov> |
Merge branch 'hzhang/mat-redundant'
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| #
b2bf6370
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| 01-Aug-2013 |
Hong Zhang <hzhang@mcs.anl.gov> |
rm psubcomm from MatGetRedundantMatrix() because Jed does not like it :-(
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| #
c79c5527
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| 28-Jul-2013 |
Hong Zhang <hzhang@mcs.anl.gov> |
add 'psubcomm' as an input for MatGetRedundantMatrix(): user can provide his own subcomm, or psubsomm, or nsubcomm
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| #
d3b23db5
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| 11-Jul-2013 |
Hong Zhang <hzhang@mcs.anl.gov> |
rm mlocal_red from MatGetRedundantMatrix()
set defaults in PetscSubcommCreate()
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| #
e04113cf
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| 24-Jul-2013 |
Barry Smith <bsmith@mcs.anl.gov> |
converted uAMS usage to SAWs usage; starts server but cannot see any published directories
|