Docs: remove "Concepts:" and related comments in /*T .. T*/ blocks

Remove all \*T ... comment blocks with e.g.

cd src && find . -type f -exec sed -i '/^[! ] *\/\*T$/,/^[! ]*T\*\/$/d' {} \;

Clea

Docs: remove "Concepts:" and related comments in /*T .. T*/ blocks

Remove all \*T ... comment blocks with e.g.

cd src && find . -type f -exec sed -i '/^[! ] *\/\*T$/,/^[! ]*T\*\/$/d' {} \;

Clean up resulting double blank lines with e.g.

cd src && find . type f \( -name "*.c" -o -name "*.cxx" -o -name "*.F" -o -name "*.F90" \) -exec sh -c "cat -s {} > tmp && mv tmp {}" \;

Manually revert those changes from the vendored code (src/sys/yaml)

Manually restore a few comments from these blocks.

Manually remove "Concepts:" and "Processors:" comments from files
which have these outside of "\*T" blocks automatically deleted above.

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Merge branch 'jacobf/2022-02-23/variadic-chkerr' into 'main'

Variadic CHKERRQ()

See merge request petsc/petsc!4889

The great renaming:

- CHKERRQ() -> PetscCall()
- CHKERRV() -> PetscCallVoid()
- CHKERRMPI() -> PetscCallMPI()
- CHKERRABORT() -> PetscCallAbort()
- CHKERRCONTINUE() -> PetscCallContinue()
- CHKERRXX

The great renaming:

- CHKERRQ() -> PetscCall()
- CHKERRV() -> PetscCallVoid()
- CHKERRMPI() -> PetscCallMPI()
- CHKERRABORT() -> PetscCallAbort()
- CHKERRCONTINUE() -> PetscCallContinue()
- CHKERRXX() -> PetscCallThrow()
- CHKERRCXX() -> PetscCallCXX()
- CHKERRCUDA() -> PetscCallCUDA()
- CHKERRCUBLAS() -> PetscCallCUBLAS()
- CHKERRCUSPARSE() -> PetscCallCUSPARSE()
- CHKERRCUSOLVER() -> PetscCallCUSOLVER()
- CHKERRCUFFT() -> PetscCallCUFFT()
- CHKERRCURAND() -> PetscCallCURAND()
- CHKERRHIP() -> PetscCallHIP()
- CHKERRHIPBLAS() -> PetscCallHIPBLAS()
- CHKERRHIPSOLVER() -> PetscCallHIPSOLVER()
- CHKERRQ_CEED() -> PetscCallCEED()
- CHKERR_FORTRAN_VOID_FUNCTION() -> PetscCallFortranVoidFunction()
- CHKERRMKL() -> PetscCallMKL()
- CHKERRMMG() -> PetscCallMMG()
- CHKERRMMG_NONSTANDARD() -> PetscCallMMG_NONSTANDARD()
- CHKERRCGNS() -> PetscCallCGNS()
- CHKERRPTSCOTCH() -> PetscCallPTSCOTCH()
- CHKERRSTR() -> PetscCallSTR()
- CHKERRTC() -> PetscCallTC()

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PetscInitialize() and PetscFinalize() wrapped:

- ierr = PetscInitialize();if (ierr) return ierr;
+ CHKERRQ(PetscInitialize());

- ierr = PetscFinalize();
- return ierr;
+ CHKERRQ(PetscFinalize());
+

PetscInitialize() and PetscFinalize() wrapped:

- ierr = PetscInitialize();if (ierr) return ierr;
+ CHKERRQ(PetscInitialize());

- ierr = PetscFinalize();
- return ierr;
+ CHKERRQ(PetscFinalize());
+ return 0;

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chkerr and friends wrapped

Merge branch 'jacobf/2022-01-05/c99' into 'main'

Feature: C99 and C++11

See merge request petsc/petsc!4700

make PetscInfo() variadic

Merge branch 'jacobf/2021-12-09/attribute-format-mat' into 'main'

Feature: Attribute Format - Mat

See merge request petsc/petsc!4634

applied attribute format to mat tests and tutorials

Merge branch 'jacobf/2021-09-04/petscdevice-cupminitialization' into 'main'

Replace current CUPM initialization with unified PetscDevice version

See merge request petsc/petsc!4310

- Replace the current CUPM initialization infrastructure with PetscDevice.
- Remove -petsc_use_default_null_stream and -[cuda|hip]_synchronize options
- Remove PetscCUDASynchronize and PetscHIPSynchr

- Replace the current CUPM initialization infrastructure with PetscDevice.
- Remove -petsc_use_default_null_stream and -[cuda|hip]_synchronize options
- Remove PetscCUDASynchronize and PetscHIPSynchronize
- Remove PetscCUDAInitialize(), PetscCUDAInitializeCheck(), PetscHIPInitialize(), and
PetscHIPInitializeCheck()
- Remove PetscCUBLASInitializeHandle(), PetscCUSOLVERDnInitializeHandle(),
PetscHIPBLASInitializeHandle(), and PetscHIPSOLVERInitializeHandle().
- Remove petsc_gputimer_begin and petsc_gputimer_begin
- Add -device_enable, -device_select and -device_view options
- Replace -[cuda|hip]_device with split options -device_enable_[cuda|hip] and -device_select_[cuda|hip]
- Replace -[cuda|hip]_view with -device_view_[cuda|hip]
- Add PetscDeviceInitType
- Add PetscDeviceInitialize() and PetscDeviceInitialized()
- Add PetscDeviceView()

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Merge branch 'jolivet/fix-defined-define' into 'main'

requires: define -> requires: defined

Closes #984

See merge request petsc/petsc!4265

requires: define -> requires: defined

Merge branch 'jacobf/2021-05-18/petscdevice-context' into 'main'

Feature: PetscDeviceContext

See merge request petsc/petsc!3994

Added PetscDevice to manage interaction and configuration of available devices.

Added PetscDeviceContext class to manage stream interactions for CUDA and HIP device
backends. The new class is design

Added PetscDevice to manage interaction and configuration of available devices.

Added PetscDeviceContext class to manage stream interactions for CUDA and HIP device
backends. The new class is designed to facilitate a fork-join parallelization model for
asynchronous compute.

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Merge branch 'barry/2020-09-01/fix-with-log-zero' into 'master'

Clean up examples so they run correctly without warnings configured using...

See merge request petsc/petsc!3193

Clean up examples so they run correctly without warnings configured using --with-log=0 and --with-info=0

Make CI pipeline linux job build with these options

Commit-type: testing-fix, style-fix, mai

Clean up examples so they run correctly without warnings configured using --with-log=0 and --with-info=0

Make CI pipeline linux job build with these options

Commit-type: testing-fix, style-fix, maintainability
/spend 1h

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Merge branch 'knepley/feature-plex-adaptive-interpolation' into 'master'

Knepley/feature plex adaptive interpolation

See merge request petsc/petsc!3018

Merge branch 'barry/2020-08-16/fix-source-formatting' into 'master'

Turn on checkbadSource test to generate an error when found; fix all source code that causes errors

See merge request petsc/petsc

Merge branch 'barry/2020-08-16/fix-source-formatting' into 'master'

Turn on checkbadSource test to generate an error when found; fix all source code that causes errors

See merge request petsc/petsc!3064

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Turn on checkbadSource test to generate an error when found; fix all source code that causes errors

Commit-type: portability-fix, testing-fix, style-fix, feature, maintainability
/spend 1.5h

Plex: Tests for adaptive interpolation
SNES ex8: Test for adaptive interpolation
SNES ex13: Added simple example of adaptive interpolation in GMG
SNES ex12: Added checkerboard test from Brannic

Plex: Tests for adaptive interpolation
SNES ex8: Test for adaptive interpolation
SNES ex13: Added simple example of adaptive interpolation in GMG
SNES ex12: Added checkerboard test from Brannick et.al. optimal interpolation paper
Mat ex7/ex182 Filter out info for libpetscbamg from tests

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Merge branch 'barry/2020-06-23/fix-init-fptrap-spelling' into 'master'

Fix spelling of PetscDetermineInitalFPTrap()

See merge request petsc/petsc!2905

Fix spelling of PetscDetermineInitalFPTrap()

Commit-type: style-fix
Time: .05 hours
Reported-by: "Jose E. Roman" <jroman@dsic.upv.es>

Merge branch 'barry/2020-06-13/fix-init-fptrap' into 'master'

Bug fix for initialization of _trapmode on Linux and MacOS when exception...

See merge request petsc/petsc!2877

Bug fix for initialization of _trapmode on Linux and MacOS when exception handling of divide by zero is enabled

Cleanup and extension of floating point exception handling.
Now properly turns

Bug fix for initialization of _trapmode on Linux and MacOS when exception handling of divide by zero is enabled

Cleanup and extension of floating point exception handling.
Now properly turns off floating point trapping for Lapack when Fortran linker turns on divide by zero trapping

Commit-type: error-checking, bug-fix, portability-fix, feature, documentation
Reported-by: Sanjay Govindjee <s_g@berkeley.edu>

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