Merge branch 'jacobf/2022-02-23/variadic-chkerr' into 'main'

Variadic CHKERRQ()

See merge request petsc/petsc!4889

The great renaming:

- CHKERRQ() -> PetscCall()
- CHKERRV() -> PetscCallVoid()
- CHKERRMPI() -> PetscCallMPI()
- CHKERRABORT() -> PetscCallAbort()
- CHKERRCONTINUE() -> PetscCallContinue()
- CHKERRXX

The great renaming:

- CHKERRQ() -> PetscCall()
- CHKERRV() -> PetscCallVoid()
- CHKERRMPI() -> PetscCallMPI()
- CHKERRABORT() -> PetscCallAbort()
- CHKERRCONTINUE() -> PetscCallContinue()
- CHKERRXX() -> PetscCallThrow()
- CHKERRCXX() -> PetscCallCXX()
- CHKERRCUDA() -> PetscCallCUDA()
- CHKERRCUBLAS() -> PetscCallCUBLAS()
- CHKERRCUSPARSE() -> PetscCallCUSPARSE()
- CHKERRCUSOLVER() -> PetscCallCUSOLVER()
- CHKERRCUFFT() -> PetscCallCUFFT()
- CHKERRCURAND() -> PetscCallCURAND()
- CHKERRHIP() -> PetscCallHIP()
- CHKERRHIPBLAS() -> PetscCallHIPBLAS()
- CHKERRHIPSOLVER() -> PetscCallHIPSOLVER()
- CHKERRQ_CEED() -> PetscCallCEED()
- CHKERR_FORTRAN_VOID_FUNCTION() -> PetscCallFortranVoidFunction()
- CHKERRMKL() -> PetscCallMKL()
- CHKERRMMG() -> PetscCallMMG()
- CHKERRMMG_NONSTANDARD() -> PetscCallMMG_NONSTANDARD()
- CHKERRCGNS() -> PetscCallCGNS()
- CHKERRPTSCOTCH() -> PetscCallPTSCOTCH()
- CHKERRSTR() -> PetscCallSTR()
- CHKERRTC() -> PetscCallTC()

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chkerr and friends wrapped

Merge branch 'heeho/feature-newtontrdc' into 'main'

Newton Trust Region Dogleg Cauchy nonlinear solver

See merge request petsc/petsc!4294

snes: Add new type SNESNEWTONTRDC for Newton Trust Region Dogleg Cauchy

Merge branch 'knepley/feature-monitors-reorg' into 'master'

Knepley/feature monitors reorg

See merge request petsc/petsc!3631

KSP: Reorganized monitors - Now the residual can be viewed using -ksp_monitor draw and a plot can be made using -ksp_monitor draw::draw_lg - This also works for the true residual and error - We no

KSP: Reorganized monitors - Now the residual can be viewed using -ksp_monitor draw and a plot can be made using -ksp_monitor draw::draw_lg - This also works for the true residual and error - We noe register monitors so that dispatch based on viewer and format works - Add KSPMonitorLGCreate(), and remove KSPMonitorLGResidualNorm*() and KSPMonitorLGTrueResidualNorm*() - Add KSPMonitorError(), used by -ksp_monitor_error - Add arguments to KSPMonitorSetFromOptions() to allow line graphs to be configured - Remove SNESMonitorLGCreate() and SNESMonitorLGResidualNorm() which are now handled by the default monitor - PetscViewerAndFormat now allows a payload - VecView_Plex() and VecView_Plex_Local() must propagate the flag indicating zero BC

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Merge remote-tracking branch 'origin/dalcinl/fix-null'

TS/SNES/Tao: Fix 0 ->NULL for pointers

See merge request petsc/petsc!2783

SNES: Replace 0 -> NULL for pointers

Merge branch 'barry/9-7/2019/SNES_CONVERGED_TR_DELTA-Error' [PR #1857]

* barry/9-7/2019/SNES_CONVERGED_TR_DELTA-Error:
Make SNES_CONVERGED_TR_DELTA negative to indicate the SNES did not converge.

Make SNES_CONVERGED_TR_DELTA negative to indicate the SNES did not converge.

I cannot explain why previously this was handled as converged since the trust region going to
zero doesn't seem to corres

Make SNES_CONVERGED_TR_DELTA negative to indicate the SNES did not converge.

I cannot explain why previously this was handled as converged since the trust region going to
zero doesn't seem to correspond with convergence of the nonlinear solver

Commit-type: bug-fix
Reported-by: Heeho Park <heepark@sandia.gov>

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Merged in psanan/man-pages-remove-keywords (pull request #1717)

Man pages: Remove .keywords fields

Approved-by: BarryFSmith <bsmith@mcs.anl.gov>

Man pages: remove .keywords: fields

This field is recognized by doctext from Sowing (http://wgropp.cs.illinois.edu/projects/software/sowing/doctext/node20.htm#Node20),
but it doesn't seem to be unif

Man pages: remove .keywords: fields

This field is recognized by doctext from Sowing (http://wgropp.cs.illinois.edu/projects/software/sowing/doctext/node20.htm#Node20),
but it doesn't seem to be uniformly used or maintained.

Thus, remove all .keywords: fields, and a following blank line, if present.

This is accomplished with GNU sed (gsed on OS X), with the following commands.
*Warning* that this type of command can corrupt a .git directory,
so be cautious in reusing or modifying these commands. They first look
for and delete matching lines with a following line consisting of only whitespace,
and then delete any remaining matching lines.

find src/ -type f -exec gsed -i '/keywords:/ {N; /\n\s*$/d}' {} +
find src/ -type f -exec gsed -i '/keywords:/d' {} +
find include/ -type f -exec gsed -i '/keywords:/ {N; /\n\s*$/d}' {} +
find include/ -type f -exec gsed -i '/keywords:/d' {} +

Hints on the sed command obtained from: https://unix.stackexchange.com/questions/100754/how-to-delete-a-specific-line-and-the-following-blank-line-using-gnu-sed

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Merge branch 'master' into wence/feature-patch-all-at-once

Merge branch 'knepley/feature-snes-patch' [PR #1332]

* knepley/feature-snes-patch:
Implement SNESPATCH, a SNES for the topological construction of nonlinear relaxation methods.

Merge branch 'Fande-Kong/feature-support-domainerror-in-compute-jacobian' [PR #1327]

* Fande-Kong/feature-support-domainerror-in-compute-jacobian:
Support domain errors in compute Jacobian

Merge branch 'master' into jpusztay/feature-swarm-symplectic-example

Merged petsc/petsc into master

Added a few tests for Jacobian domain errors

Merge branch 'master' into knepley/fix-plex-partition-parallel

* master: (414 commits)
very small updates to users manual
syntax is define(XXX) in examples tests not defined(XXX)
Increase patc

Merge branch 'master' into knepley/fix-plex-partition-parallel

* master: (414 commits)
very small updates to users manual
syntax is define(XXX) in examples tests not defined(XXX)
Increase patchlevel to 3.10.3
petsc4py: updat to latest maint snapshot with SNESTEST updates
Fix link for CUDA example in PETSc from GPUs.html page Minor fixes to installation instructions
Mat: Fixed types in Pardiso interface
Converted example comment to latex
This example crashes (for unknown reasons, probably related to the handling of extended derived types passed as arguments) with the PGI Fortran compiler
Remove outdated requires: from top of several examples
remove outdated test requires: command from top of source file
Fix the documentation for -ksp_gmres_cgs_refinement_type
Commit f20c2d659b168217cb455989f28afe052d71a64c broke lex.py so the users manual was no longer being built. There reverted the changes to lex.py
Plex: Add PetscPartitioner to fort list Suggested-by: Jiaoyan Li <Jiaoyan.Li@inl.gov>
Doc: Fix spelling Suggested-by: Manuel Colera Rico <m.colera@upm.es>
Mat ex88: check in double or quad precision only
Fix error with PetscComplex when PETSc is compiled with C and used in C++
configure: fix typo endwith -> endswith
Sys ex23: Migrated to ts_max_time in yaml file as well.
AO ex5: Fixed missing CHKERRQ();
Mat test ex88: add tests for MatMultAdd and MatMultTranposeAdd
...

Conflicts:
src/dm/impls/plex/examples/tests/ex12.c

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Merge branch 'master' into knepley/feature-snes-patch

Not sure if this has done the right thing because there are no tests
yet. Also, the fortran stubs break (it doesn't know what to do with
SNESCo

Merge branch 'master' into knepley/feature-snes-patch

Not sure if this has done the right thing because there are no tests
yet. Also, the fortran stubs break (it doesn't know what to do with
SNESCompositeType), and I don't know how to fix it.

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Merged petsc/petsc into master

Merged petsc/petsc into master

Merge branch 'stefano_zampini/cherrypick-from-continuous-adjoint' [PR #1250]

* stefano_zampini/cherrypick-from-continuous-adjoint:
Few improvements from the continuous adjoint branch
This branch ext

Merge branch 'stefano_zampini/cherrypick-from-continuous-adjoint' [PR #1250]

* stefano_zampini/cherrypick-from-continuous-adjoint:
Few improvements from the continuous adjoint branch
This branch extracts few things that are in the continuous adjoint branch that should go into PETSc

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SNES: add class to solve the transposed linear system within SNES