| #
1d763ceb
|
| 17-Mar-2014 |
Peter Brune <brune@mcs.anl.gov> |
Merge branch 'master' into prbrune/matcoloring-greedy
|
| #
3ff8325b
|
| 08-Mar-2014 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'master' into barry/google
|
| #
cd0a3881
|
| 07-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'jed/plex-Wmaybe-uninitialized'
* jed/plex-Wmaybe-uninitialized:
DMPlex: Need to protect this Free()
|
| #
3d2707ba
|
| 03-Mar-2014 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'master' into barry/nonlinearsolvertable
Conflicts:
include/petscsnes.h
|
| #
ab15ae43
|
| 03-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'master' into knepley/feature-plex-fas
* master: (863 commits)
Revert "mpich: use latest mpich tarball with gcov but use '--enable-coverage' mpich configure option."
MatCreateTransp
Merge branch 'master' into knepley/feature-plex-fas
* master: (863 commits)
Revert "mpich: use latest mpich tarball with gcov but use '--enable-coverage' mpich configure option."
MatCreateTranspose: fix for lazy block size
mpich: use latest mpich tarball with gcov but use '--enable-coverage' mpich configure option.
configure: add FC_DEFINE_FLAG to petscvariables
added a citation for pounders, Stefan finally came through
update to latest netcdf fixes bug that did not allow building on recent Mac OS X
DMPlex: Fixes for CGNS - Fixed loop bounds since CGNS uses closed intervals - Bug with mixed cell types - Typo with coordinates
final updates from nightly tests
fix for countcfunction
removed outdated docs and comments on MatStructure usage removed SAME_PRECONDITIONER since no longer used removed unneed use of MatStructure in Schur complement matrix
removed MatStructure arguments from Tao
fixes for Sundials and fun3d cannot use MPIU_SUM for integer arrays
inplace ILU factorization must update state of inplace matrix to prevent infinite recursion of updating PC
fixes for BDDC by the way not having BDDC always in the testing is going to lead to trouble
the compute Jacobian functions for SNES and TS now do not take a MatStructure flag
KSPSetOperators() no longer has the MatStructure argument. The Mat objects now track that information themselves. Use KPS/PCSetReusePreconditioner() to prevent the recomputation of the preconditioner if the operator changed in the way that SAME_PRECONDITIONER did with KSPSetOperators()
tracks when Mat's have a change in nonzero structure this information can be used by PC to determine how preconditioners must be rebuilt currently only does an error check if the user said same nonzero pattern but actually changed the pattern
completed cleanup of removal of matrix pointers to compute jacobian routines
makefile: Added 'make includegraph' to create an inclusion dependency graph.
Contrib: Updated include-graph.sh script to ignore *.hh files
...
Conflicts:
src/dm/dt/interface/dt.c
show more ...
|
| #
d343d804
|
| 01-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Need to protect this Free()
|
| #
061e9cde
|
| 27-Feb-2014 |
Vijay Mahadevan <vijay.m@gmail.com> |
Merging master with feature-dmmoab. Only conflict was with SOURCECXX specification under impls/moab/makefile.
|
| #
0b8bc44d
|
| 26-Feb-2014 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'barry/rm-matstructure-mat-pointer'
Conflicts:
include/petsctao.h
|
| #
d1e9a80f
|
| 25-Feb-2014 |
Barry Smith <bsmith@mcs.anl.gov> |
the compute Jacobian functions for SNES and TS now do not take a MatStructure flag
|
| #
94ab13aa
|
| 23-Feb-2014 |
Barry Smith <bsmith@mcs.anl.gov> |
completed cleanup of removal of matrix pointers to compute jacobian routines
update changes file
fixed tao examples to no longer use Mat* arguments for Jacobian/Hessian etc computations
|
| #
bf5b0b0b
|
| 25-Feb-2014 |
Vijay Mahadevan <vijay.m@gmail.com> |
Merged petsc/petsc into master
|
| #
dcf28c8f
|
| 23-Feb-2014 |
Jed Brown <jed@jedbrown.org> |
Merge branch 'jed/plex-Wmaybe-uninitialized'
* jed/plex-Wmaybe-uninitialized:
DMPlex: quash more -Wmaybe-uninitialized
DMPlex: quash -Wmaybe-uninitialized
|
| #
020631bc
|
| 19-Feb-2014 |
Peter Brune <brune@mcs.anl.gov> |
Merge branch 'master' into prbrune/snes-fascontinuation
Conflicts:
include/petscsnesfas.h
|
| #
38ea73c8
|
| 18-Feb-2014 |
Jed Brown <jed@jedbrown.org> |
DMPlex: quash more -Wmaybe-uninitialized
|
| #
c7ff62de
|
| 13-Jan-2014 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'master' into barry/wirth-fusion-materials
bad manual merge needs to be fixed
this is what happens when branches hang around too long
Conflicts:
src/ts/examples/tutorials/advection-dif
Merge branch 'master' into barry/wirth-fusion-materials
bad manual merge needs to be fixed
this is what happens when branches hang around too long
Conflicts:
src/ts/examples/tutorials/advection-diffusion-reaction/ex10.c
show more ...
|
| #
ed91c37e
|
| 19-Dec-2013 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'master' into knepley/feature-dmda-section
* master: (319 commits)
SNESGS: Fix for uninitialized variable warning in gssecant.c
DMPlex: Fix for orientation in Gmsh files - Fixed tes
Merge branch 'master' into knepley/feature-dmda-section
* master: (319 commits)
SNESGS: Fix for uninitialized variable warning in gssecant.c
DMPlex: Fix for orientation in Gmsh files - Fixed test output
do not use C99 struct initialization code in PETSc
Nightly Summary: Added time taken to each of the tests in the dashboard.
ASCII printing of floating point numbers must cast to (double) to support quad precision
configure: check fortranDatatypes only when fortran is enabled [this fixes configure crash with --with-fc=0]
don't use non-portable and also dependent on floating point precision system level math constants
picky compilers
fix a couple compiler warnings/errors (depending on compiler) for Matlab engine code
DMPlex: More fixup from bad rebase, moved to DMGet/SetCoordinateSection()
DM: Added DMGet/SetCoordinateSection()
Fuckup: Fix for merge that is still untangling bad rebase from Oct. 17th 2013 - Fixed const in declarations - Fixed merge from PetscFE - Fixed 2 mallocs
replace all echo in test/tutorial makefiles with printf since echo behaves differently on different systems
DMDA: Missing header - Damn rebase
DMPlex ex3: Added 2D Q_1 and 3D P_2 tests
DMDA: Added DMDAProjectFunction() and DMDAComputeL2Diff()
DMDA: Fixed 2D geometry - Should reuse DMPlex routines
DMDA: Fix bug in 2D closure operation for cells
DMDA: Make closure operations also return the size
DMDA: Changed DMDACreateSection() to emulate DMPlexCreateSection()
...
Conflicts:
config/builder.py
include/petscdmda.h
src/dm/dt/interface/dtfe.c
src/dm/impls/da/dageometry.c
src/dm/impls/da/dalocal.c
src/dm/impls/plex/plexgeometry.c
show more ...
|
| #
0d414b50
|
| 17-Dec-2013 |
Vijay Mahadevan <vijay.m@gmail.com> |
Merged petsc/petsc into master
|
| #
9c5a1e1b
|
| 17-Dec-2013 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'master' into knepley/feature-plex-gmsh
* master: (163 commits)
do not use C99 struct initialization code in PETSc
Nightly Summary: Added time taken to each of the tests in the dash
Merge branch 'master' into knepley/feature-plex-gmsh
* master: (163 commits)
do not use C99 struct initialization code in PETSc
Nightly Summary: Added time taken to each of the tests in the dashboard.
ASCII printing of floating point numbers must cast to (double) to support quad precision
configure: check fortranDatatypes only when fortran is enabled [this fixes configure crash with --with-fc=0]
don't use non-portable and also dependent on floating point precision system level math constants
picky compilers
fix a couple compiler warnings/errors (depending on compiler) for Matlab engine code
DMPlex: More fixup from bad rebase, moved to DMGet/SetCoordinateSection()
DM: Added DMGet/SetCoordinateSection()
Fuckup: Fix for merge that is still untangling bad rebase from Oct. 17th 2013 - Fixed const in declarations - Fixed merge from PetscFE - Fixed 2 mallocs
replace all echo in test/tutorial makefiles with printf since echo behaves differently on different systems
DMDA: Missing header - Damn rebase
DMPlex ex3: Added 2D Q_1 and 3D P_2 tests
DMDA: Added DMDAProjectFunction() and DMDAComputeL2Diff()
DMDA: Fixed 2D geometry - Should reuse DMPlex routines
DMDA: Fix bug in 2D closure operation for cells
DMDA: Make closure operations also return the size
DMDA: Changed DMDACreateSection() to emulate DMPlexCreateSection()
DMDA: Added functions which emulate DMPlex functionality
DMDA: Now DMDAGetNumCells() returns the cells in each direction as well
...
Conflicts:
config/builder.py
show more ...
|
| #
324c91e4
|
| 17-Dec-2013 |
Peter Brune <brune@mcs.anl.gov> |
Merge branch 'madams/gamg-destroy' into prbrune/pcgamg-classicalinterpolationstrategies
|
| #
578f55a3
|
| 17-Dec-2013 |
Peter Brune <brune@mcs.anl.gov> |
Merge branch 'master' into madams/gamg-destroy
Conflicts:
src/ksp/pc/impls/gamg/gamg.c
|
| #
8c722d37
|
| 10-Dec-2013 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'master' into barry/reduce-dmsetup-da-memoryusage
Conflicts:
src/dm/examples/tests/ex15.c
src/dm/examples/tutorials/ex3.c
src/dm/impls/da/da2.c
src/dm/impls/da/da3.c
|
| #
a906b49b
|
| 10-Dec-2013 |
BarryFSmith <bsmith@mcs.anl.gov> |
Merged master into barry/update-xxxviewfromoptions
|
| #
edbbd480
|
| 10-Dec-2013 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'master' into barry/xcode
|
| #
e0133700
|
| 05-Dec-2013 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'barry/saws-push-header-body' into barry/saws-options
|
| #
fb3f26da
|
| 04-Dec-2013 |
Jed Brown <jedbrown@mcs.anl.gov> |
Merge branch 'jed/malloc-array'
Type arguments dropped from PetscMalloc[2-7], PetscNew, and PetscNewLog,
added PetscMalloc1 for allocating typed arrays, add PetscCalloc[1-7] for
allocating cleared (
Merge branch 'jed/malloc-array'
Type arguments dropped from PetscMalloc[2-7], PetscNew, and PetscNewLog,
added PetscMalloc1 for allocating typed arrays, add PetscCalloc[1-7] for
allocating cleared (zeroed) memory.
* jed/malloc-array:
Sys: Add pointer casts from (void **) in calls to PetscMalloc1()
Sys: drop explicit type arguments from PetscNew() and PetscNewLog()
Sys: add PetscCalloc[1-7]
Sys: add PetscMalloc1 macro, array allocation without redundant types
PetscMalloc[2-7]: remove type arguments, infer from pointer type
SNESComputeJacobianDefaultColor: fix uninitialized variable
show more ...
|