( i) Following Barry's comment, I should not be
calling SetUp_Binary() from
SetFromOptions_Binary().

(ii) To allow users to configure their binary
viewer and activate mpi-io (e.g. to preserve old
fu

( i) Following Barry's comment, I should not be
calling SetUp_Binary() from
SetFromOptions_Binary().

(ii) To allow users to configure their binary
viewer and activate mpi-io (e.g. to preserve old
functionality) at run-time, I call
PetscViewerSetFromOptions()
from within SetUp_Binary(), but only if
SetFromOptions_Binary() has not already been
called elsewhere.

show more ...

Missing #undef __FUNCT__

It is required that the filename be preserved.

Function re-name so the pattern
PetscViewerBinarySkipInfo(PetscViewer)
and
PetscViewerBinaryGetSkipInfo(PetscViewer,Bool)
can be followed for
PetscViewerBinarySetMPIIO()
and friends.

- Merged _BinaryMPIIO calls and _Binary calls into
a single function for ViewerDestroy_Binary().

- Removed function overloading and removed
dependency of filename being set from
PetscViewerBinarySet

- Merged _BinaryMPIIO calls and _Binary calls into
a single function for ViewerDestroy_Binary().

- Removed function overloading and removed
dependency of filename being set from
PetscViewerBinarySetMPIIO_Binary()

- Introduced PetscViewerFileSetUp_BinaryMPIIO()
and PetscViewerFileSetUp_Binary() which replace
the code which used to live in
PetscViewerFileSetName_Binary () and
PetscViewerFileSetName_MPIOIO(). As a result,
PetscViewerFileSetName() now just copies the
string passed in.

show more ...

Applying petsc formatting rules to the function
PetscViewerSetFromOptions_Binary()

Refactor of PetscViewerBinary code.

Commencing reorganisation of PetscViewerBinary to
have a more consistent way of setting and using
option prefixes and allowing mpi-io to be used
on specific viewe

Refactor of PetscViewerBinary code.

Commencing reorganisation of PetscViewerBinary to
have a more consistent way of setting and using
option prefixes and allowing mpi-io to be used
on specific viewers.

This commit:
( i) introduces a setupcalled flag into the binary
context
( ii) adds an empty SetUp function
(iii) adds a SetFromOptions_Binary function which
combines all options (skip header, skipinfo, etc)
within a PetscOptionsHead()/PetscOptionsTail()
block so that option prefixes are used.

show more ...

Fixed errors in manual page documentation including formating.
Fixed rank argument for DMCreateRedundant() to be PetscMPIInt

Reported-by: Dave May <dave.mayhem23@gmail.com>

Merge branch 'mlange/plex-gmsh-binary'

* mlange/plex-gmsh-binary:
Viewer: Fix 64-bit integer parse
Plex-Gmsh: Improve error handling
Viewer: Use %lld to parse 64-bit integers
Plex-Gmsh: Fixe

Merge branch 'mlange/plex-gmsh-binary'

* mlange/plex-gmsh-binary:
Viewer: Fix 64-bit integer parse
Plex-Gmsh: Improve error handling
Viewer: Use %lld to parse 64-bit integers
Plex-Gmsh: Fixes for 64-bit integer mode
Plex-Gmsh: Fix and test parallel Gmsh reads
Plex-Gmsh: Add new Gmsh tests based on 2D square
Plex-Gmsh: Add DMPlexCreateGmshFromFile, which determines file type
Plex-Gmsh: Enabling binary mesh file reads in DMPlexCreateGmsh
Viewer: Add PetscViewerRead()
Plex-Gmsh: Adding PetscViewerASCIIRead()
Plex-Gmsh: Read gmsh elements into memory for repeated file traversal.
Plex-Gmsh: Fix cell and dimension counting

Conflicts:
src/dm/impls/plex/plexgmsh.c

show more ...

Merge branch 'barry/remove-unneeded-paren-petscmalloc'

Conflicts:
src/mat/impls/baij/seq/baij.c

convert some PetscMalloc() to PetscMalloc1()
remove unneeded () in first argument to PetscMalloc/Calloc1()
fixes for MATLAB examples

Viewer: Add PetscViewerRead()

This utility wraps the type-specific View() functions
of binary and ASCII readers to enable transparent file reads.
It also adds string handling based on single charact

Viewer: Add PetscViewerRead()

This utility wraps the type-specific View() functions
of binary and ASCII readers to enable transparent file reads.
It also adds string handling based on single character reads
to make mesh file input more convenient.

show more ...

Merge branch 'tisaac/feature-fe-geom-dim' into tisaac/plex-flexible-projection

Use the new PetscFECellGeom

Conflicts:
include/petscdmplex.h
include/petscfe.h
src/dm/impls/plex/plexfem.c

Merge branch 'master' of bitbucket.org:petsc/petsc into mark/ex49-bs

Merge branch 'psanan/doc-typos'

typo in PetscViewerBinaryWrite man page

Merge branch 'master' into barry/saws-options

Merge branch 'master' into stefano_zampini/pcbddc-multilevel-improvement

Conflicts:
src/docs/website/documentation/changes/dev.html
src/ksp/ksp/examples/tutorials/ex59.c
src/ksp/pc/impls/bddc/bdd

Merge branch 'master' into stefano_zampini/pcbddc-multilevel-improvement

Conflicts:
src/docs/website/documentation/changes/dev.html
src/ksp/ksp/examples/tutorials/ex59.c
src/ksp/pc/impls/bddc/bddcprivate.c

show more ...

Merge branch 'master' into shri/ts-events

Conflicts:
src/ts/interface/ts.c

Merge branch 'master' into shri/feature-dm-circuit

Conflicts:
src/dm/impls/makefile

Merge branch 'master' into prbrune/matcoloring-greedy

Merge branch 'master' into knepley/feature-plex-fas

* master: (863 commits)
Revert "mpich: use latest mpich tarball with gcov but use '--enable-coverage' mpich configure option."
MatCreateTransp

Merge branch 'master' into knepley/feature-plex-fas

* master: (863 commits)
Revert "mpich: use latest mpich tarball with gcov but use '--enable-coverage' mpich configure option."
MatCreateTranspose: fix for lazy block size
mpich: use latest mpich tarball with gcov but use '--enable-coverage' mpich configure option.
configure: add FC_DEFINE_FLAG to petscvariables
added a citation for pounders, Stefan finally came through
update to latest netcdf fixes bug that did not allow building on recent Mac OS X
DMPlex: Fixes for CGNS - Fixed loop bounds since CGNS uses closed intervals - Bug with mixed cell types - Typo with coordinates
final updates from nightly tests
fix for countcfunction
removed outdated docs and comments on MatStructure usage removed SAME_PRECONDITIONER since no longer used removed unneed use of MatStructure in Schur complement matrix
removed MatStructure arguments from Tao
fixes for Sundials and fun3d cannot use MPIU_SUM for integer arrays
inplace ILU factorization must update state of inplace matrix to prevent infinite recursion of updating PC
fixes for BDDC by the way not having BDDC always in the testing is going to lead to trouble
the compute Jacobian functions for SNES and TS now do not take a MatStructure flag
KSPSetOperators() no longer has the MatStructure argument. The Mat objects now track that information themselves. Use KPS/PCSetReusePreconditioner() to prevent the recomputation of the preconditioner if the operator changed in the way that SAME_PRECONDITIONER did with KSPSetOperators()
tracks when Mat's have a change in nonzero structure this information can be used by PC to determine how preconditioners must be rebuilt currently only does an error check if the user said same nonzero pattern but actually changed the pattern
completed cleanup of removal of matrix pointers to compute jacobian routines
makefile: Added 'make includegraph' to create an inclusion dependency graph.
Contrib: Updated include-graph.sh script to ignore *.hh files
...

Conflicts:
src/dm/dt/interface/dt.c

show more ...

Merging master with feature-dmmoab. Only conflict was with SOURCECXX specification under impls/moab/makefile.

Merged petsc/petsc into master

Merge branch 'master' into prbrune/snes-fascontinuation

Conflicts:
include/petscsnesfas.h