Add PetscViewerHDF5{Get,Set}Collective and -viewer_hdf5_collective.

* Use H5_VERSION_GE to decide HDF5 version.
* If H5_VERSION_GE undefined, define it as 0.
* Discussed in https://bitbucket.org/pet

Add PetscViewerHDF5{Get,Set}Collective and -viewer_hdf5_collective.

* Use H5_VERSION_GE to decide HDF5 version.
* If H5_VERSION_GE undefined, define it as 0.
* Discussed in https://bitbucket.org/petsc/petsc/pull-requests/1737/add-ability-to-turn-on-off-hdf5-collective/diff#comment-105015892

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hdf5v.c: No need for HDF5 version check.

Leave it to the BuildSystem.

keep data transfer property list in PetscViewer_HDF5

PetscViewer_HDF5 moved to separate headerfile viewerhdf5impl.h

Merged in barry/update-collective-on (pull request #1744)

Update the use of Collective on in the manual pages to reflect the new style

Update the use of Collective on in the manual pages to reflect the new style

Commit-type: style-fix, documentation
Thanks-to: Patrick Sanan <patrick.sanan@gmail.com>

Merge remote-tracking branch 'origin/psanan/docs-remove-manconcepts' [PR #1733]

Man pages: remove Concepts: fields

These fields were previously stripped from the man pages by logic removed in
21a59cba2737d49dc2f0bd12c08db0d2a3f3f209

Remove these fields from all man pages (but

Man pages: remove Concepts: fields

These fields were previously stripped from the man pages by logic removed in
21a59cba2737d49dc2f0bd12c08db0d2a3f3f209

Remove these fields from all man pages (but not from examples).

This is accomplished with GNU sed (gsed on OS X), with the following commands.
*Warning* that this type of command can corrupt a .git directory,
so be cautious in reusing or modifying these commands. They first look
for and delete matching lines with a following line consisting of only whitespace,
and then delete any remaining matching lines.

find src -type f -not -path "*/examples/*" -not -name "*.html" -not -name "*.bib" -exec gsed -i '/Concepts:/ {N; /\n\s*$/d}' {} +
find src -type f -not -path "*/examples/*" -not -name "*.html" -not -name "*.bib" -exec gsed -i '/Concepts:/d' {} +
find include -type f -not -path "*/examples/*" -not -name "*.html" -not -name "*.bib" -exec gsed -i '/Concepts:/ {N; /\n\s*$/d}' {} +
find include -type f -not -path "*/examples/*" -not -name "*.html" -not -name "*.bib" -exec gsed -i '/Concepts:/d' {} +

Hints on the sed command obtained from: https://unix.stackexchange.com/questions/100754/how-to-delete-a-specific-line-and-the-following-blank-line-using-gnu-sed

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Merged in haplav/feature-petscviewerview-hdf5 (pull request #1722)

add PetscViewerView_HDF5()

Approved-by: BarryFSmith <bsmith@mcs.anl.gov>

PetscViewerView_HDF5 impl.

PetscViewerHDF5Open() now calls PetscViewerSetFromOptions().

Just like PetscViewerBinaryOpen().

Merge branch 'master' of bitbucket.org:petsc/petsc

Merge remote-tracking branch 'origin/maint'

Merged in haplav/fix-hdf5v-circular-dependencies (pull request #1643)

fix hdf5v circular dependencies

Approved-by: Matthew Knepley <knepley@gmail.com>
Approved-by: BarryFSmith <bsmith@mcs.anl.gov>

Merged in haplav/fix-hdf5v-circular-dependencies (pull request #1643)

fix hdf5v circular dependencies

Approved-by: Matthew Knepley <knepley@gmail.com>
Approved-by: BarryFSmith <bsmith@mcs.anl.gov>
Approved-by: Jed Brown <jed@59a2.org>

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Merged in haplav/remove-petscviewerhdf5setaijnames (pull request #1644)

Get rid of PetscViewerHDF5{Get,Set}AIJNames().

Approved-by: BarryFSmith <bsmith@mcs.anl.gov>

Get rid of PetscViewerHDF5{Get,Set}AIJNames().

fix-issue-289

doc: no need to include petscsys.h because petscviewerhdf5.h does already

Move HDF5 array IO stuff from sys to vec.

- Fix issue 288.
- Moved PetscViewerHDF5Load,PetscViewerHDF5ReadSizes and their helpers from
src/sys/classes/viewer/impls/hdf5/hdf5v.c
into the new fi

Move HDF5 array IO stuff from sys to vec.

- Fix issue 288.
- Moved PetscViewerHDF5Load,PetscViewerHDF5ReadSizes and their helpers from
src/sys/classes/viewer/impls/hdf5/hdf5v.c
into the new file
src/vec/is/utils/hdf5io.c
- PetscViewerHDF5Load() header moved from viewerimpl.h to petscis.h
- PetscViewerHDF5ReadSizes() header moved from petscviewerhdf5.h to petscis.h

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Merge branch 'maint'

Merged in barry/fix-datatype-to-hdf5-enum (pull request #1620)

PetscDataType of enum should map to hdf5 type of int

Approved-by: Matthew Knepley <knepley@gmail.com>

PetscDataType of enum should map to hdf5 type of int

Commit-type: bug-fix

Merge branch 'master' of bitbucket.org:petsc/petsc

Merged in haplav/mat-load-hdf5-revert-matlab-group-naming (pull request #1461)

MAT-file reader: prepare current functionality for release

Approved-by: BarryFSmith <bsmith@mcs.anl.gov>

HDF5 viewer: revert MAT-file HDF5 group naming for now

Merge branch 'master' into wence/feature-patch-all-at-once