Merge branch 'barry/2023-04-26/fix-fileio-man-pages/release' into 'release'

Cleanup of manual pages in src/sys/fileio

See merge request petsc/petsc!6381

Cleanup of manual pages in src/sys/fileio

Merge branch 'jacobf/2022-12-10/petscerrorcode-nodiscard' into 'main'

Feature: Non-discardable PetscErrorCode

See merge request petsc/petsc!5923

Make PetscErrorCode a non-discardable enum

Merge remote-tracking branch 'origin/release'

Merge branch 'jolivet/configure-housekeeping' into 'main'

configure: remove unused variables/tests

See merge request petsc/petsc!5805

Merge branch 'jolivet/fix-typo-preprocessor-variable' into 'release'

Sys: fix typo RTDL -> RTLD

See merge request petsc/petsc!5807

Sys: fix typo, follow-up of !5807

Sys: fix typo RTDL -> RTLD

Merge branch 'barry/2022-09-03/add-emcc' into 'main'

Get PETSc building and running with emcc

See merge request petsc/petsc!5588

Fix source code for emcc

Commit-type: portability
/spend 1h

Merge branch 'balay/fix-macos-dl' into 'main'

redo fix for crusher build errors

See merge request petsc/petsc!5672

redo fix for crusher build errors - earlier fix 6f5d4113db2439cc1ff0f31c92f65e0d3d55d9fb disabled symbol look-up on MacOS

Reported-by: "Aagaard, Brad T" <baagaard@usgs.gov>


CC arch-olcf-

redo fix for crusher build errors - earlier fix 6f5d4113db2439cc1ff0f31c92f65e0d3d55d9fb disabled symbol look-up on MacOS

Reported-by: "Aagaard, Brad T" <baagaard@usgs.gov>


CC arch-olcf-crusher/obj/sys/dll/dlimpl.o
/autofs/nccs-svm1_home1/balay/petsc/src/sys/dll/dlimpl.c:333:5: error: use of undeclared identifier 'Dl_info'
Dl_info info;
^
/autofs/nccs-svm1_home1/balay/petsc/src/sys/dll/dlimpl.c:335:16: warning: implicit declaration of function 'dladdr' is invalid in C99 [-Wimplicit-function-declaration]
PetscCheck(dladdr(*(void **)&func, &info), PETSC_COMM_SELF, PETSC_ERR_LIB, "Failed to lookup symbol: %s", dlerror());
^
/autofs/nccs-svm1_home1/balay/petsc/src/sys/dll/dlimpl.c:335:41: error: use of undeclared identifier 'info'
PetscCheck(dladdr(*(void **)&func, &info), PETSC_COMM_SELF, PETSC_ERR_LIB, "Failed to lookup symbol: %s", dlerror());
^
/autofs/nccs-svm1_home1/balay/petsc/src/sys/dll/dlimpl.c:337:35: error: use of undeclared identifier 'info'
PetscCall(PetscDemangleSymbol(info.dli_sname, name));
^
1 warning and 3 errors generated.

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Merge branch 'jacobf/2022-09-21/2-bike-2-shed' into 'main'

Feature: Bicycle Storage Facility 2

See merge request petsc/petsc!5661

source code format changes due to .clang-format changes

Merge branch 'barry/2022-08-23/fix-sys-man' into 'main'

Fix up all manual pages in src/sys directory

See merge request petsc/petsc!5559

Fix up all manual pages in src/sys directory

Commit-type: documentation
/spend 10h

Merge branch 'barry/2022-08-21/clang-format-source' into 'main'

format repository with clang-format

See merge request petsc/petsc!5541

clang-format: convert PETSc sources to comply with clang-format

Merge remote-tracking branch 'origin/release'

Merge branch 'balay/update-crusher' into 'release'

crusher: update build to work with craype-accel-amd-gfx90a module via --with-openmp=1

See merge request petsc/petsc!5268

crusher: update build to work with craype-accel-amd-gfx90a module via --with-openmp=1

Merge branch 'psanan/docs-sphinx-man-pages' into 'main'

Integrate Man Pages into Sphinx Docs

Closes #1132 and #1015

See merge request petsc/petsc!4989

Docs: bulk add backticks to .seealso man page fields

```python
import os
import re
import fileinput

def _process_word(word):
comma = "," if word.endswith(",") else ""
return "`%s`%s" % (wor

Docs: bulk add backticks to .seealso man page fields

```python
import os
import re
import fileinput

def _process_word(word):
comma = "," if word.endswith(",") else ""
return "`%s`%s" % (word.rstrip(","), comma)

def _process_stripped_line(line):
return " ".join(map(_process_word, line.split()))

start_pattern = re.compile(r"^( *\.seealso:? )(.*$)")

def process_file(filename_full):
with fileinput.FileInput(filename_full, inplace=True) as f:
in_block = False
for line in f:
line_stripped = line.strip()
# end ".seealso blocks" on a blank line or C-style comment close
line_modified = None
if not line_stripped:
in_block = False
elif line_stripped.endswith("*/"):
in_block = False
else:
match = re.match(start_pattern,
line) # not stripped line
if match:
indent = " " * len(match.group(1))
in_block = True
line_modified = match.group(
1) + _process_stripped_line(
match.group(2).strip())
elif in_block:
line_modified = indent + _process_stripped_line(
line_stripped)
if line_modified:
print(line_modified) # prints to the file
else:
print(line, end="") # prints to the file

BASE_DIRS = ["src", "include"]
EXT = [".c", ".cxx", ".cpp", ".cu", ".h", ".hpp", ".hxx"]
EXCLUDE_DIRS = ["tests", "tutorials", "ftn-auto", "ftn-custom", "benchmarks"]

def main():
""" Process everything """
for base in BASE_DIRS:
for root, dirs, files in os.walk(base):
for filename in files:
if os.path.splitext(filename)[1] in EXT:
filename_full = os.path.join(root, filename)
print("FILE ---", filename_full)
process_file(filename_full)
for exclude_dir in EXCLUDE_DIRS:
if exclude_dir in dirs:
dirs.remove(exclude_dir)

if __name__ == "__main__":
main()
```

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Merge branch 'jacobf/2022-04-05/petscattrformat-all-the-rest' into 'main'

Enable PETSC_ATTRIBUTE_FORMAT()

See merge request petsc/petsc!5085