Merge branch 'barry/petsc-viewer-draw-set-draw-type'

simple access of saws from main.js

Merge branch 'master' into barry/reduce-dmsetup-da-memoryusage

Conflicts:
src/dm/examples/tests/ex15.c
src/dm/examples/tutorials/ex3.c
src/dm/impls/da/da2.c
src/dm/impls/da/da3.c

Merged master into barry/update-xxxviewfromoptions

Merge branch 'master' into barry/xcode

added PetscViewerDrawSetDrawType() and PetscOptions[Get]Viewer() support for -viewer_type draw:tikz

Merge branch 'barry/rm-strdup'

moved petsc-solver-selection js code into PETSc try at saws/js

fixed (void*) caste to (char*) cast for malloc of string in PetscStrdup()

move SAWs push and pop header and body for options into PETSc library

updated to new version of saws and latest PETSc master branch

Merge branch 'barry/rm-strdup' into barry/saws-options

Merge branch 'barry/saws-push-header-body' into barry/saws-options

removed strdup() usage from code since it is not fully supported on solaris

Merge branch 'jed/malloc-array'

Type arguments dropped from PetscMalloc[2-7], PetscNew, and PetscNewLog,
added PetscMalloc1 for allocating typed arrays, add PetscCalloc[1-7] for
allocating cleared (

Merge branch 'jed/malloc-array'

Type arguments dropped from PetscMalloc[2-7], PetscNew, and PetscNewLog,
added PetscMalloc1 for allocating typed arrays, add PetscCalloc[1-7] for
allocating cleared (zeroed) memory.

* jed/malloc-array:
Sys: Add pointer casts from (void **) in calls to PetscMalloc1()
Sys: drop explicit type arguments from PetscNew() and PetscNewLog()
Sys: add PetscCalloc[1-7]
Sys: add PetscMalloc1 macro, array allocation without redundant types
PetscMalloc[2-7]: remove type arguments, infer from pointer type
SNESComputeJacobianDefaultColor: fix uninitialized variable

show more ...

Merge branch 'barry/remove-strdup'
fixed bug in previous version of branch that caused SAWs to crash

comment code to make sure malloc and free are not wrongly replaced with PETSc versions

Revert "removed direct use of non-portable strdup"

I forgot that these must be pure mallocs since SAWs may free and remalloc them

This reverts commit 77b82169ce741be1f9ad766c5deaa64f2b843e90.

Sys: Add pointer casts from (void **) in calls to PetscMalloc1()

C++ build errors: "‘void*’ is not a pointer-to-object type"

Sys: drop explicit type arguments from PetscNew() and PetscNewLog()

git grep -l 'PetscNew\(Log\)\?(' -- $1 | xargs perl -pi -e '
s@PetscNew\([^,;()]+ *, *@PetscNew(@;
s@PetscNewLog\(([^,;()]+) *,[^,

Sys: drop explicit type arguments from PetscNew() and PetscNewLog()

git grep -l 'PetscNew\(Log\)\?(' -- $1 | xargs perl -pi -e '
s@PetscNew\([^,;()]+ *, *@PetscNew(@;
s@PetscNewLog\(([^,;()]+) *,[^,;()]+, *@PetscNewLog($1,@'

show more ...

Sys: add PetscMalloc1 macro, array allocation without redundant types

The type is inferred from the pointer return type. This patch is
automated via the following script:

git grep -l 'PetscMalloc(

Sys: add PetscMalloc1 macro, array allocation without redundant types

The type is inferred from the pointer return type. This patch is
automated via the following script:

git grep -l 'PetscMalloc(.*sizeof' src | xargs perl -pi -e 's@PetscMalloc\(([^,;]*[^,; ]) *\* *sizeof\([^,;()]+\),@PetscMalloc1($1,@'

This commit contains an additional bug-fix in csrperm.c, fixing pointer
arity. The code was introduced in 2006, but the allocation could not
have been correct at any time. This probably means that
MatDuplicate_SeqAIJPERM has never been tested.

a54129beb540034ba105796c682d589e7e1111f2
Richard Tran Mills <rmills@ornl.gov>

Added MATSEQCSRPERM support for MatDuplicate() and conversion to/from
MATSEQAIJ. Note that these changes are not quite debugged.

show more ...

Merge branch 'barry/minor-draw-improvements' into jed/chem

Merge branch 'jed/stdint.h'

Merged to remove warnings in master about casts between PetscInt* and external package equavilents with 64 bit indices

Merge branch 'barry/remove-strdup'

removed direct use of non-portable strdup