Add a new ARKIMEX solver for fast-slow systems

Merge branch 'stefanozampini/dmplex-mass' into 'main'

Fixes/enhancements for mass matrix support

See merge request petsc/petsc!7649

SNES: add SNESResetCounters

Merge branch 'stefanozampini/ts-resizeflag' into 'main'

TS: add TSGetStepResize() to API to inquire about resizing

See merge request petsc/petsc!7757

TS: add TSGetStepResize() to API to inquire about resizing

Merge remote-tracking branch 'origin/release'

Merge branch 'stefanozampini/fix-dirk-dae-restart' into 'release'

Guarantee that SNES function is called before SNES jacobian in multilevel solvers

See merge request petsc/petsc!7563

TSDIRK: allow non-consistent dual variables

this requires the algebraic IS during the residual callback
add tests

Merge remote-tracking branch 'origin/release'

Merge branch 'jed/suppress-Warray-bounds' into 'release'

Fix gcc-14 -Warray-bounds warnings for hypothetical negative sizes

See merge request petsc/petsc!7541

Fix gcc-14 -Warray-bounds warnings for hypothetical negative sizes

These warnings arise because we use (signed int32) PetscInt for sizes
that must be nonnegative, then cast to size_t. This leads to

Fix gcc-14 -Warray-bounds warnings for hypothetical negative sizes

These warnings arise because we use (signed int32) PetscInt for sizes
that must be nonnegative, then cast to size_t. This leads to warnings
when the compiler doesn't know that the integers can't be negative.

In function ‘PetscMemzero’,
inlined from ‘TSARKIMEXRegister’ at /home/jed/petsc/src/ts/impls/arkimex/arkimex.c:1182:10:
/home/jed/petsc/include/petscstring.h:758:3: warning: ‘memset’ pointer overflow between offset 0 and size [-17179869184, -8] [-Warray-bounds=]
758 | memset(a, 0, n);
| ^~~~~~~~~~~~~~~

Compare commit 095c51fa7c16ea848964bdaab3c2c2b53b8a3072 from 2023:
Fix gcc-13 -Warray-bounds warnings involving hypothetical negative sizes

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Merge branch 'barry/2024-04-13/fix-sowing-strings' into 'main'

Update PETSc to use sowing bfort that handles string arguments and PETSC_NULL_INT

See merge request petsc/petsc!7480

Update source code removing all unneeded /*@C and associated manual stubs and interfaces

Merge branch 'stefanozampini/tsresize-errorind' into 'main'

TSSetResize: support error indicators

See merge request petsc/petsc!7368

TS: save solution and time step at the beginning of the step

remove SNES monitor output from ex9bus example since it is numerically unstable
Just error in case SNES does not converge

Merge branch 'jolivet/fix-double' into 'main'

Fix words appearing twice in a row for no good reason

See merge request petsc/petsc!7307

Fix words appearing twice in a row for no good reason

Merge branch 'barry/2024-01-19/typedef-snes-functions' into 'main'

add typedef for functions passed to SNESSetFunction() etc to match approach in TS

See merge request petsc/petsc!7206

Change the use of the _Fn suffix to indicate a typedef of a function to just Fn

As determined on a vote on GitLab

Convert TS typedef functions to new style ending with _Fn

Commit-type: housekeeping, maintainability

Merge remote-tracking branch 'origin/release'

Merge branch 'stefanozampini/fix-tsdirk-dae' into 'release'

TSDIRK: fix DAE case for explicit first stage

See merge request petsc/petsc!7184

TSARKIMEX: fix DAE case for explicit first stage

Merge remote-tracking branch 'origin/release'

Merge branch 'barry/2023-12-04/fix-manpage-references/release' into 'release'

Update references in the manual pages to use Sphinx citation processing

See merge request petsc/petsc!7101