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32029c4c
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| 06-Oct-2013 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'master' into knepley/feature-plex-refine-3d
* master: (149 commits)
Bib: Added papers referencing PETSc from ResearchGate
Bib: Fixed urls for some refs Suggested-by: Michele De Ste
Merge branch 'master' into knepley/feature-plex-refine-3d
* master: (149 commits)
Bib: Added papers referencing PETSc from ResearchGate
Bib: Fixed urls for some refs Suggested-by: Michele De Stefano
fixed bug that has appeared recently of false positive errors when there are zero local equations on coarse grids in gamg-agg.
MatSchurComplement: Must initialize KSP package
bib: fix inbook citation
Bib: Updated some refs
SNES: fix copy/paste in man page
fortran: fix KSPCONVERGEDDEFAULT and SNESCONVERGEDSKIP in fortran includes
Mat SBAIJ: avoid invalid memory read in MatSOR_SBAIJ
Revert "MatMPIBAIJSetPreallocationCSR() handled the input matrix entries incorrectly, it treated them as if each row of values"
PCGAMG: fix corruption for multiple solves when MatSetNearNullSpace is used
PCGAMG: remove distracting comment
KSP ex49: restrict near-null space for elasticity example with sym BC
MatMPIBAIJSetPreallocationCSR() handled the input matrix entries incorrectly, it treated them as if each row of values was provided ordered by row within the block rows instead of by block as it was originally designed to be. Also added more discussion to the manual pages on the expected order of the values
Fix accidental creation of the matrices in SNESNCG used for linear analogue LS.
PCGAMG: add man page for PCGAMGType
fortran: fix snesconvergedskip_() kspconvergedskip_() kspconvergeddefault*_()
rm //
Sys: new_ir changed from PetscInt to PetscObjectState - so fix mallocs to use the new type
SNES: Fixed package init in SNESLineSearchCreate()
...
Conflicts:
include/petscdmplex.h
src/dm/impls/plex/examples/tests/ex5.c
src/dm/impls/plex/plex.c
src/dm/interface/dm.c
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| #
25a75388
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| 01-Oct-2013 |
Jed Brown <jedbrown@mcs.anl.gov> |
Merge branch 'jed/remove-dynamic-loading-option'
Option --with-dynamic-loading has been removed. Similar functionality
is available via the run-time option -dynamic_library_preload.
* jed/remove-d
Merge branch 'jed/remove-dynamic-loading-option'
Option --with-dynamic-loading has been removed. Similar functionality
is available via the run-time option -dynamic_library_preload.
* jed/remove-dynamic-loading-option:
Sys: PetscContainerCreate must call PetscSysInitializePackage
Remove --with-dynamic-loading / PETSC_USE_DYNAMIC_LIBRARIES
Conflicts:
src/dm/impls/mesh/mesh.c
src/dm/interface/dlregisdmdm.c
src/docs/website/documentation/changes/dev.html
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| #
5dceddf7
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| 27-Aug-2013 |
Debojyoti Ghosh <ghosh@mcs.anl.gov> |
In TSARKIMEX, If b is not specified, it is equal to bt, not last row of At
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| #
256ff83f
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| 11-Sep-2013 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'master' into barry/wirth-fusion-materials
Conflicts:
src/ts/examples/tutorials/advection-diffusion-reaction/ex10.c
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| #
aa2d57e9
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| 30-Aug-2013 |
Jed Brown <jedbrown@mcs.anl.gov> |
Remove --with-dynamic-loading / PETSC_USE_DYNAMIC_LIBRARIES
This option was mostly redundant because normal shared libraries satisfy
all the same needs. This commit adds the run-time option
-dynami
Remove --with-dynamic-loading / PETSC_USE_DYNAMIC_LIBRARIES
This option was mostly redundant because normal shared libraries satisfy
all the same needs. This commit adds the run-time option
-dynamic_library_preload that can be used to load/initialize all the
packages in advance, as used to be done when --with-dynamic-loading.
The PetscDLLibraryRegister_petscxxx functions have been kept, but are
not called unless -dynamic_library_preload is used. The petsc-dev
discussion, "Why --with-dynamic-loading?" did not reach consensus about
whether this was ever useful, so it may also be removable.
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| #
ec5563ed
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| 18-Jun-2013 |
Shri <abhyshr@mcs.anl.gov> |
Update step completion status flags in TSStep_XXX when rolling back step.
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| #
57a922c7
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| 18-Jun-2013 |
Shri <abhyshr@mcs.anl.gov> |
Merge branch 'shri/ts-rollback' into shri/ts-events
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| #
24655328
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| 17-Jun-2013 |
Shri <abhyshr@mcs.anl.gov> |
TS: Rollback current step
Added TSRollBack() to rollback the current step. This feature is currently
available with arkimex, rosw, and theta methods. Tested on tutorials/ex8.c
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81d12688
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| 13-Jun-2013 |
Debojyoti Ghosh <ghosh@mcs.anl.gov> |
Bugfix in TSExtrapolate_ARKIMEX used to calculate stage predictor-based initial guess...
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| #
c1758d98
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| 13-Jun-2013 |
Debojyoti Ghosh <ghosh@mcs.anl.gov> |
Fixed a bug in TSInterpolate_ARKIMEX...
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| #
64b5d2f7
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| 11-Jun-2013 |
Debojyoti Ghosh <ghosh@mcs.anl.gov> |
Repositioned the saving of previous time-step stage values to after acceptance of time step
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| #
e33c197d
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| 11-Jun-2013 |
Richard Mills <rtm@eecs.utk.edu> |
Merged petsc/petsc into rmills/petsc master.
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| #
48593285
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| 09-Jun-2013 |
Debojyoti Ghosh <ghosh@mcs.anl.gov> |
Bugfix: do not use extrapolated initial guess in the first time step
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| #
74cd440c
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| 06-Jun-2013 |
Debojyoti Ghosh <ghosh@mcs.anl.gov> |
Adding extrapolated initial guess to ARKIMEX - part 2
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| #
56dcabba
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| 05-Jun-2013 |
Debojyoti Ghosh <ghosh@mcs.anl.gov> |
Adding extrapolated initial guess to ARKIMEX - part 1
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| #
8071eebe
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| 29-May-2013 |
Jed Brown <jedbrown@mcs.anl.gov> |
Merge branch 'maint'
* maint:
changes/34.html: document stricter MatRestoreRow/MatRestoreRowIJ
Cannot use PETSC_COMM_WORLD in library code
DMPlex: Removed PETSC_COMM_WORLD from code
Fix VecS
Merge branch 'maint'
* maint:
changes/34.html: document stricter MatRestoreRow/MatRestoreRowIJ
Cannot use PETSC_COMM_WORLD in library code
DMPlex: Removed PETSC_COMM_WORLD from code
Fix VecSetDM() to accept dm=NULL
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| #
34497c8d
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| 27-May-2013 |
Jed Brown <jedbrown@mcs.anl.gov> |
Cannot use PETSC_COMM_WORLD in library code
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| #
6a4bb4b0
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| 26-Apr-2013 |
Jed Brown <jedbrown@mcs.anl.gov> |
Merge bug fix/patch releases up to 3.2-p7 into maint-3.2
* commit 'a9157d915ed96804280c3dc077186a2a633fd603': (157 commits)
Fix PyPI download URL to help pip figure out the release version
#1109
Merge bug fix/patch releases up to 3.2-p7 into maint-3.2
* commit 'a9157d915ed96804280c3dc077186a2a633fd603': (157 commits)
Fix PyPI download URL to help pip figure out the release version
#110990 fix timestamp order for .so vs .a during 'make install'
Update FFTW download
Increase patchlevel to 3.2-p7
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| #
bc056aa5
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| 26-Apr-2013 |
Jed Brown <jedbrown@mcs.anl.gov> |
Merge branch 'jed/tsgetadapt'
* jed/tsgetadapt:
TSGetAdapt: restore name from TSGetTSAdapt
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552698da
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| 16-Apr-2013 |
Jed Brown <jed@59A2.org> |
TSGetAdapt: restore name from TSGetTSAdapt
This function was called TSGetAdapt in petsc-3.3 and was changed to
TSGetTSAdapt in:
commit ad6bc4219076b084d4a49a29c04a77944f238f10
Author: Barry Smi
TSGetAdapt: restore name from TSGetTSAdapt
This function was called TSGetAdapt in petsc-3.3 and was changed to
TSGetTSAdapt in:
commit ad6bc4219076b084d4a49a29c04a77944f238f10
Author: Barry Smith <bsmith@mcs.anl.gov>
Date: Sun Dec 9 18:14:24 2012 -0600
My first TS restart just 8 million other changes needed PETSc!
TSGetAdapt() changed to TSGetTSAdapt() because it gets a TSAdapt object, not an Adapt object
added TSAdapt binary view and load
This rationale does not match the more established convention used by
functions such as the following.
MatGetInfo
MatGetColoring
MatGetNullSpace
MatGetLocalToGlobalMapping
MatGetLocalToGlobalMappingBlock (31 characters)
SNESGetConvergedReason
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| #
7e7d4f0d
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| 10-Apr-2013 |
Richard Mills <rtm@eecs.utk.edu> |
Merged petsc/petsc into rmills/petsc master
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| #
a62689b3
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| 03-Apr-2013 |
Jed Brown <jed@59A2.org> |
Merge branch 'jed/ts-eimex'
* jed/ts-eimex:
TSEIMEX: cleanup example and convergence tabulation
TSEIMEX: add basic test to nightlies, fix warning
Addressed Barry's comments from the EIMEX pull
Merge branch 'jed/ts-eimex'
* jed/ts-eimex:
TSEIMEX: cleanup example and convergence tabulation
TSEIMEX: add basic test to nightlies, fix warning
Addressed Barry's comments from the EIMEX pull request for the EIMEX tutorials
Addressed Barry's comments from the pull request for eimex.c
fixed the starting procedure in arkimex for DAEs to handle snes properly
fixed small ts typo
fixed ts typo
Updated and tested eimex examples
TSEIMEX: use makefile targets for running examples
Implementation of the Extrapolated IMEX schemes - initial push.
TSEIMEX: import extrapolated IMEX from mercurial repository
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| #
8a1af44d
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| 03-Apr-2013 |
Jed Brown <jed@59A2.org> |
Merge branch 'barry/rm-xxxregisterdynamic'
* barry/rm-xxxregisterdynamic:
Registration: remove stale 'XXRegisterDynamic)' entries in man pages
TS examples: fix use of PetscFunctionList and add t
Merge branch 'barry/rm-xxxregisterdynamic'
* barry/rm-xxxregisterdynamic:
Registration: remove stale 'XXRegisterDynamic)' entries in man pages
TS examples: fix use of PetscFunctionList and add to nightlies
Changes: Note updates to XRegisterDynamic/PetscObjectComposeFunctionDynamic
PetscObjectComposeFunctionDynamic: remove stale docs and usage
developers.tex: remove complications from function composition with dlls
removed string version of function name for XXXRegister(), PetscFunctionListAdd() and PetscObjectComposeFunction()
changes: document PetscFunctionListAdd() API change
developers.tex: update documentation of PetscObjectComposeFunction
removed path and MPI_Comm arguments from PetscFunctionListFind/Add()
removed path argument to XXXInitializePackage() and XXXRegister()
removed XXXRegisterDynamic() but kept the APIs for everything else underneath the same phase I of the update to handling registering function pointers
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| #
e1d27e54
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| 28-Mar-2013 |
Jed Brown <jed@59A2.org> |
Merge branch 'barry/rm-xxxregisterdynamic' into jed/ts-eimex
PetscObjectComposeFunctionDynamic() and TSRegisterDynamic() were
replaced by PetscObjectComposeFunction() and TSRegister(), both of which
Merge branch 'barry/rm-xxxregisterdynamic' into jed/ts-eimex
PetscObjectComposeFunctionDynamic() and TSRegisterDynamic() were
replaced by PetscObjectComposeFunction() and TSRegister(), both of which
drop the string name argument.
* barry/rm-xxxregisterdynamic: (82 commits)
...
Conflicts:
src/ts/interface/tsregall.c
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| #
bdf89e91
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| 26-Mar-2013 |
Barry Smith <bsmith@mcs.anl.gov> |
removed string version of function name for XXXRegister(), PetscFunctionListAdd() and PetscObjectComposeFunction()
|